Wall clock time and date at job start Wed Apr 1 2020 01:22:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08997 * 109.52410 * 2 1 4 4 C 1.53189 * 109.49334 * 239.92374 * 2 1 3 5 5 N 1.46933 * 108.77196 * 185.41463 * 4 2 1 6 6 C 1.34779 * 120.62793 * 233.58162 * 5 4 2 7 7 O 1.21586 * 119.99900 * 5.22563 * 6 5 4 8 8 N 1.34768 * 120.00007 * 185.21988 * 6 5 4 9 9 C 1.46505 * 120.00021 * 175.01518 * 8 6 5 10 10 C 1.50700 * 109.46876 * 180.02562 * 9 8 6 11 11 H 1.08001 * 120.00448 * 359.97438 * 10 9 8 12 12 C 1.37881 * 119.99603 * 180.02562 * 10 9 8 13 13 N 1.31517 * 119.99841 * 179.97438 * 12 10 9 14 14 Si 1.86795 * 120.00116 * 359.97438 * 12 10 9 15 15 H 1.48507 * 109.47062 * 270.00303 * 14 12 10 16 16 H 1.48497 * 109.47039 * 30.00303 * 14 12 10 17 17 H 1.48504 * 109.47108 * 150.00441 * 14 12 10 18 18 C 1.46924 * 118.73946 * 53.86158 * 5 4 2 19 19 C 1.53623 * 108.54154 * 306.08972 * 18 5 4 20 20 C 1.53041 * 109.49870 * 120.08321 * 2 1 3 21 21 H 1.08995 * 109.45997 * 301.33740 * 20 2 1 22 22 N 1.46505 * 109.45865 * 61.29507 * 20 2 1 23 23 C 1.34772 * 120.00084 * 204.99763 * 22 20 2 24 24 O 1.21508 * 119.99800 * 0.02562 * 23 22 20 25 25 O 1.34634 * 120.00423 * 179.97438 * 23 22 20 26 26 C 1.45194 * 117.00576 * 180.02562 * 25 23 22 27 27 C 1.53004 * 109.46784 * 60.00096 * 26 25 23 28 28 C 1.52996 * 109.47402 * 179.97438 * 26 25 23 29 29 C 1.52997 * 109.47229 * 300.00238 * 26 25 23 30 30 H 1.08994 * 109.47432 * 180.08162 * 1 2 3 31 31 H 1.09008 * 109.46846 * 300.07825 * 1 2 3 32 32 H 1.09002 * 109.47460 * 60.07203 * 1 2 3 33 33 H 1.08993 * 109.58861 * 65.62795 * 4 2 1 34 34 H 1.09006 * 109.70469 * 305.26690 * 4 2 1 35 35 H 0.97005 * 120.00339 * 355.02536 * 8 6 5 36 36 H 1.08999 * 109.46770 * 60.00458 * 9 8 6 37 37 H 1.08994 * 109.47105 * 299.99867 * 9 8 6 38 38 H 0.97003 * 120.00332 * 179.97438 * 13 12 10 39 39 H 1.08992 * 109.58869 * 65.92749 * 18 5 4 40 40 H 1.09000 * 109.58546 * 186.35111 * 18 5 4 41 41 H 1.08997 * 109.63682 * 294.86711 * 19 18 5 42 42 H 1.08996 * 109.43408 * 174.72618 * 19 18 5 43 43 H 0.96998 * 119.99638 * 25.00061 * 22 20 2 44 44 H 1.08992 * 109.47378 * 60.00443 * 27 26 25 45 45 H 1.09007 * 109.47100 * 180.02562 * 27 26 25 46 46 H 1.08996 * 109.47118 * 299.99638 * 27 26 25 47 47 H 1.08998 * 109.47062 * 59.99996 * 28 26 25 48 48 H 1.09007 * 109.46982 * 180.02562 * 28 26 25 49 49 H 1.09002 * 109.47260 * 299.99773 * 28 26 25 50 50 H 1.09008 * 109.47292 * 59.99527 * 29 26 25 51 51 H 1.08997 * 109.47410 * 179.97438 * 29 26 25 52 52 H 1.08998 * 109.46842 * 299.99763 * 29 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8943 1.0273 0.0000 4 6 2.0412 -0.7237 -1.2497 5 7 3.5046 -0.8291 -1.1696 6 6 4.2810 -0.3863 -2.1784 7 8 3.7793 0.1912 -3.1234 8 7 5.6136 -0.5838 -2.1396 9 6 6.4444 -0.2011 -3.2840 10 6 7.8863 -0.5251 -2.9886 11 1 8.1568 -0.9710 -2.0429 12 6 8.8602 -0.2512 -3.9254 13 7 10.1186 -0.5334 -3.6674 14 14 8.3924 0.5208 -5.5608 15 1 8.0957 -0.5496 -6.5465 16 1 7.1906 1.3740 -5.3797 17 1 9.5192 1.3515 -6.0564 18 6 4.1050 -1.4319 0.0282 19 6 3.5709 -0.6951 1.2659 20 6 2.0408 -0.7231 1.2483 21 1 1.6582 -0.2246 2.1389 22 7 1.5783 -2.1131 1.2307 23 6 1.4503 -2.7954 2.3859 24 8 1.7179 -2.2575 3.4420 25 8 1.0247 -4.0726 2.3698 26 6 0.9099 -4.7455 3.6513 27 6 -0.0854 -3.9917 4.5357 28 6 0.4154 -6.1768 3.4334 29 6 2.2781 -4.7766 4.3354 30 1 -0.3634 -1.0276 0.0015 31 1 -0.3633 0.5151 0.8894 32 1 -0.3634 0.5127 -0.8906 33 1 1.7637 -0.1578 -2.1389 34 1 1.6053 -1.7215 -1.3007 35 1 6.0227 -0.9794 -1.3541 36 1 6.3419 0.8688 -3.4658 37 1 6.1222 -0.7523 -4.1674 38 1 10.8038 -0.3411 -4.3266 39 1 3.8338 -2.4862 0.0817 40 1 5.1896 -1.3333 -0.0177 41 1 3.9160 0.3387 1.2540 42 1 3.9335 -1.1898 2.1669 43 1 1.3643 -2.5424 0.3876 44 1 -1.0601 -3.9695 4.0485 45 1 -0.1713 -4.4966 5.4980 46 1 0.2665 -2.9719 4.6911 47 1 1.1241 -6.7141 2.8032 48 1 0.3288 -6.6818 4.3956 49 1 -0.5595 -6.1543 2.9463 50 1 2.6300 -3.7567 4.4907 51 1 2.1919 -5.2813 5.2976 52 1 2.9871 -5.3136 3.7053 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000787358684.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:22:37 Heat of formation + Delta-G solvation = -111.998278 kcal Electronic energy + Delta-G solvation = -31421.858407 eV Core-core repulsion = 27228.613628 eV Total energy + Delta-G solvation = -4193.244779 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 341.215 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.21195 -40.17203 -38.49898 -36.86870 -34.65201 -34.43342 -34.12471 -33.00071 -32.18388 -31.06258 -28.16376 -27.72573 -27.66850 -26.68046 -25.23240 -23.28140 -22.30514 -21.99021 -20.38932 -20.14001 -19.12157 -18.57086 -18.06808 -16.77411 -16.48148 -16.38092 -15.92902 -15.70062 -15.13606 -15.04318 -14.70674 -14.45139 -14.33108 -14.16900 -13.83747 -13.71514 -13.69279 -13.14256 -12.98832 -12.80381 -12.55752 -12.48447 -12.29676 -12.20782 -12.19608 -12.09820 -11.99277 -11.80276 -11.68891 -11.56412 -11.22094 -11.16262 -10.96364 -10.75886 -10.68265 -10.62152 -10.25341 -9.95894 -9.55930 -9.45459 -9.38206 -8.77508 -8.55130 -7.97649 -6.20307 -4.22237 1.94482 2.65027 3.02811 3.28082 3.35133 3.43838 3.71285 3.88803 4.28786 4.34697 4.40430 4.44698 4.50464 4.59230 4.60283 4.67495 4.87920 5.03747 5.14769 5.15260 5.16035 5.21407 5.22904 5.28153 5.36869 5.37928 5.46493 5.50257 5.55294 5.56873 5.65696 5.67600 5.74437 5.80932 5.88742 5.93045 5.95376 5.98881 6.05525 6.20417 6.33293 6.60469 6.79225 7.11975 7.19764 7.23915 7.38143 7.49431 8.18354 8.25527 8.65278 8.79490 9.16830 9.40861 10.91642 Molecular weight = 341.21amu Principal moments of inertia in cm(-1) A = 0.016706 B = 0.002435 C = 0.002239 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1675.607114 B =11498.071265 C =12504.225604 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.115 4.115 3 H 0.096 0.904 4 C 0.134 3.866 5 N -0.637 5.637 6 C 0.700 3.300 7 O -0.601 6.601 8 N -0.722 5.722 9 C 0.237 3.763 10 C -0.542 4.542 11 H 0.078 0.922 12 C 0.077 3.923 13 N -0.893 5.893 14 Si 0.877 3.123 15 H -0.273 1.273 16 H -0.260 1.260 17 H -0.284 1.284 18 C 0.114 3.886 19 C -0.148 4.148 20 C 0.171 3.829 21 H 0.094 0.906 22 N -0.702 5.702 23 C 0.651 3.349 24 O -0.569 6.569 25 O -0.366 6.366 26 C 0.137 3.863 27 C -0.183 4.183 28 C -0.141 4.141 29 C -0.184 4.184 30 H 0.056 0.944 31 H 0.059 0.941 32 H 0.063 0.937 33 H 0.099 0.901 34 H 0.057 0.943 35 H 0.392 0.608 36 H 0.024 0.976 37 H 0.018 0.982 38 H 0.267 0.733 39 H 0.065 0.935 40 H 0.085 0.915 41 H 0.083 0.917 42 H 0.081 0.919 43 H 0.405 0.595 44 H 0.058 0.942 45 H 0.069 0.931 46 H 0.088 0.912 47 H 0.067 0.933 48 H 0.079 0.921 49 H 0.066 0.934 50 H 0.088 0.912 51 H 0.069 0.931 52 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.401 -7.540 16.321 28.723 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.135 4.135 3 H 0.114 0.886 4 C 0.010 3.990 5 N -0.376 5.376 6 C 0.401 3.599 7 O -0.480 6.480 8 N -0.376 5.376 9 C 0.115 3.885 10 C -0.580 4.580 11 H 0.096 0.904 12 C -0.126 4.126 13 N -0.530 5.530 14 Si 0.703 3.297 15 H -0.199 1.199 16 H -0.184 1.184 17 H -0.209 1.209 18 C -0.010 4.010 19 C -0.188 4.188 20 C 0.068 3.932 21 H 0.112 0.888 22 N -0.362 5.362 23 C 0.404 3.596 24 O -0.458 6.458 25 O -0.281 6.281 26 C 0.100 3.900 27 C -0.240 4.240 28 C -0.199 4.199 29 C -0.241 4.241 30 H 0.075 0.925 31 H 0.078 0.922 32 H 0.082 0.918 33 H 0.117 0.883 34 H 0.075 0.925 35 H 0.227 0.773 36 H 0.042 0.958 37 H 0.035 0.965 38 H 0.077 0.923 39 H 0.083 0.917 40 H 0.103 0.897 41 H 0.101 0.899 42 H 0.100 0.900 43 H 0.241 0.759 44 H 0.077 0.923 45 H 0.088 0.912 46 H 0.107 0.893 47 H 0.086 0.914 48 H 0.098 0.902 49 H 0.085 0.915 50 H 0.107 0.893 51 H 0.088 0.912 52 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -22.398 -6.914 16.072 28.422 hybrid contribution 0.143 -0.136 -0.702 0.729 sum -22.254 -7.050 15.371 27.950 Atomic orbital electron populations 1.21759 0.93825 1.02215 1.02419 1.21863 0.96513 1.00914 0.94210 0.88615 1.21376 0.79225 0.99757 0.98609 1.47263 1.05860 1.65832 1.18629 1.16008 0.82139 0.79506 0.82239 1.90850 1.73717 1.48094 1.35378 1.45580 1.04459 1.65944 1.21634 1.19369 0.89598 0.95628 0.83929 1.21080 0.88998 1.43257 1.04657 0.90384 1.24783 0.94643 0.94701 0.98500 1.69883 1.00205 1.47230 1.35711 0.86810 0.78803 0.80190 0.83848 1.19879 1.18413 1.20941 1.21628 0.98523 0.96750 0.84126 1.22437 0.95168 1.02521 0.98638 1.20967 0.93831 0.79164 0.99273 0.88756 1.44918 1.70488 1.13701 1.07113 1.18088 0.76513 0.80401 0.84552 1.90895 1.55419 1.69813 1.29660 1.86306 1.80180 1.24890 1.36738 1.22049 0.96441 0.91621 0.79846 1.22513 0.98622 1.03339 0.99522 1.21867 1.02156 0.92800 1.03040 1.22518 0.95760 1.05105 1.00728 0.92460 0.92190 0.91831 0.88261 0.92486 0.77256 0.95816 0.96456 0.92280 0.91685 0.89717 0.89879 0.89996 0.75930 0.92282 0.91226 0.89338 0.91382 0.90176 0.91533 0.89284 0.91222 0.92056 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.05 9.06 37.16 0.34 -0.71 16 2 C -0.12 -1.03 2.67 -90.50 -0.24 -1.27 16 3 H 0.10 0.94 8.14 -51.93 -0.42 0.51 16 4 C 0.13 1.53 5.42 -3.71 -0.02 1.51 16 5 N -0.64 -9.04 2.97 -178.24 -0.53 -9.57 16 6 C 0.70 13.70 8.30 -86.92 -0.72 12.98 16 7 O -0.60 -13.94 15.77 5.29 0.08 -13.85 16 8 N -0.72 -14.99 5.46 -66.42 -0.36 -15.35 16 9 C 0.24 5.91 4.50 -5.19 -0.02 5.89 16 10 C -0.54 -14.93 9.83 -34.44 -0.34 -15.26 16 11 H 0.08 2.24 7.84 -52.49 -0.41 1.82 16 12 C 0.08 2.19 5.47 -17.82 -0.10 2.10 16 13 N -0.89 -26.55 13.96 55.43 0.77 -25.77 16 14 Si 0.88 21.53 27.47 -169.99 -4.67 16.86 16 15 H -0.27 -6.60 7.11 56.52 0.40 -6.20 16 16 H -0.26 -6.36 6.54 56.52 0.37 -5.99 16 17 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 18 C 0.11 1.33 6.16 -3.49 -0.02 1.31 16 19 C -0.15 -1.51 5.79 -26.39 -0.15 -1.66 16 20 C 0.17 1.57 2.21 -67.88 -0.15 1.42 16 21 H 0.09 0.92 7.58 -51.93 -0.39 0.52 16 22 N -0.70 -6.30 3.59 -58.69 -0.21 -6.52 16 23 C 0.65 6.98 8.02 54.05 0.43 7.42 16 24 O -0.57 -7.15 11.54 -19.28 -0.22 -7.37 16 25 O -0.37 -3.71 9.94 -40.31 -0.40 -4.11 16 26 C 0.14 1.15 1.13 -90.62 -0.10 1.05 16 27 C -0.18 -1.46 8.37 37.16 0.31 -1.15 16 28 C -0.14 -0.87 8.85 37.16 0.33 -0.54 16 29 C -0.18 -1.57 8.37 37.16 0.31 -1.26 16 30 H 0.06 0.39 7.53 -51.93 -0.39 0.00 16 31 H 0.06 0.42 8.14 -51.92 -0.42 -0.01 16 32 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 33 H 0.10 1.33 6.99 -51.93 -0.36 0.97 16 34 H 0.06 0.55 6.65 -51.93 -0.35 0.20 16 35 H 0.39 7.27 5.81 -40.82 -0.24 7.03 16 36 H 0.02 0.63 7.20 -51.93 -0.37 0.25 16 37 H 0.02 0.45 7.57 -51.93 -0.39 0.06 16 38 H 0.27 7.44 8.31 -40.82 -0.34 7.10 16 39 H 0.06 0.71 7.73 -51.93 -0.40 0.31 16 40 H 0.08 1.05 5.64 -51.93 -0.29 0.76 16 41 H 0.08 0.87 8.14 -51.93 -0.42 0.44 16 42 H 0.08 0.86 8.14 -51.93 -0.42 0.43 16 43 H 0.40 3.27 6.84 -40.82 -0.28 2.99 16 44 H 0.06 0.45 8.14 -51.93 -0.42 0.02 16 45 H 0.07 0.44 8.14 -51.92 -0.42 0.02 16 46 H 0.09 0.90 5.88 -51.93 -0.31 0.59 16 47 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 48 H 0.08 0.36 8.14 -51.92 -0.42 -0.07 16 49 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 50 H 0.09 0.95 5.88 -51.92 -0.31 0.65 16 51 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 52 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 LS Contribution 400.75 15.07 6.04 6.04 Total: -1.00 -33.30 400.75 -8.38 -41.68 By element: Atomic # 1 Polarization: 14.89 SS G_CDS: -8.73 Total: 6.15 kcal Atomic # 6 Polarization: 11.96 SS G_CDS: -0.15 Total: 11.81 kcal Atomic # 7 Polarization: -56.88 SS G_CDS: -0.33 Total: -57.21 kcal Atomic # 8 Polarization: -24.79 SS G_CDS: -0.54 Total: -25.33 kcal Atomic # 14 Polarization: 21.53 SS G_CDS: -4.67 Total: 16.86 kcal Total LS contribution 6.04 Total: 6.04 kcal Total: -33.30 -8.38 -41.68 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000787358684.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -70.318 kcal (2) G-P(sol) polarization free energy of solvation -33.301 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -103.619 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.379 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.680 kcal (6) G-S(sol) free energy of system = (1) + (5) -111.998 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds