Wall clock time and date at job start Wed Apr 1 2020 01:22:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09001 * 109.49782 * 2 1 4 4 C 1.53631 * 109.45738 * 120.20904 * 2 1 3 5 5 N 1.46926 * 108.54021 * 174.74109 * 4 2 1 6 6 C 1.34780 * 120.62947 * 126.37036 * 5 4 2 7 7 O 1.21583 * 119.99950 * 184.93921 * 6 5 4 8 8 N 1.34782 * 119.99933 * 4.93377 * 6 5 4 9 9 C 1.46496 * 119.99934 * 175.01360 * 8 6 5 10 10 C 1.50691 * 109.47216 * 179.72601 * 9 8 6 11 11 H 1.08004 * 120.00341 * 359.97438 * 10 9 8 12 12 C 1.37878 * 120.00386 * 180.02562 * 10 9 8 13 13 N 1.31522 * 119.99740 * 359.97438 * 12 10 9 14 14 Si 1.86798 * 120.00467 * 179.97438 * 12 10 9 15 15 H 1.48500 * 109.47152 * 59.99743 * 14 12 10 16 16 H 1.48496 * 109.47209 * 179.97438 * 14 12 10 17 17 H 1.48503 * 109.47061 * 300.00150 * 14 12 10 18 18 C 1.46927 * 118.74083 * 306.09131 * 5 4 2 19 19 C 1.53187 * 108.77374 * 53.86140 * 18 5 4 20 20 C 1.53040 * 109.49824 * 239.93459 * 2 1 3 21 21 H 1.08997 * 109.44889 * 58.63825 * 20 2 1 22 22 N 1.46503 * 109.46135 * 298.67297 * 20 2 1 23 23 C 1.34768 * 120.00238 * 154.93181 * 22 20 2 24 24 O 1.21510 * 120.00090 * 359.97438 * 23 22 20 25 25 O 1.34643 * 120.00304 * 180.02562 * 23 22 20 26 26 C 1.45195 * 117.00442 * 180.02562 * 25 23 22 27 27 C 1.53005 * 109.47274 * 59.99651 * 26 25 23 28 28 C 1.52994 * 109.47323 * 179.97438 * 26 25 23 29 29 C 1.53000 * 109.46937 * 300.00041 * 26 25 23 30 30 H 1.09002 * 109.46575 * 180.02562 * 1 2 3 31 31 H 1.09001 * 109.47110 * 300.06521 * 1 2 3 32 32 H 1.08996 * 109.47066 * 60.06711 * 1 2 3 33 33 H 1.08995 * 109.74049 * 55.00449 * 4 2 1 34 34 H 1.09001 * 109.66368 * 294.43010 * 4 2 1 35 35 H 0.96995 * 119.99704 * 354.73541 * 8 6 5 36 36 H 1.09005 * 109.47095 * 299.72379 * 9 8 6 37 37 H 1.09006 * 109.46866 * 59.72226 * 9 8 6 38 38 H 0.96997 * 120.00082 * 180.02562 * 13 12 10 39 39 H 1.09000 * 109.58575 * 173.65452 * 18 5 4 40 40 H 1.09001 * 109.58348 * 294.07417 * 18 5 4 41 41 H 1.08998 * 109.49675 * 65.31952 * 19 18 5 42 42 H 1.09002 * 109.49512 * 185.41323 * 19 18 5 43 43 H 0.97006 * 119.99823 * 334.92882 * 22 20 2 44 44 H 1.09001 * 109.47040 * 60.00177 * 27 26 25 45 45 H 1.08993 * 109.47257 * 180.02562 * 27 26 25 46 46 H 1.08999 * 109.46943 * 300.00905 * 27 26 25 47 47 H 1.08994 * 109.47307 * 60.00191 * 28 26 25 48 48 H 1.09007 * 109.46951 * 180.02562 * 28 26 25 49 49 H 1.09001 * 109.46972 * 299.99812 * 28 26 25 50 50 H 1.09007 * 109.47286 * 60.00099 * 29 26 25 51 51 H 1.09007 * 109.47118 * 179.97438 * 29 26 25 52 52 H 1.08994 * 109.47194 * 299.99504 * 29 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8938 1.0275 0.0000 4 6 2.0418 -0.7289 1.2518 5 7 3.5053 -0.8283 1.1690 6 6 4.2819 -0.3854 2.1776 7 8 5.4921 -0.3903 2.0603 8 7 3.7170 0.0631 3.3161 9 6 4.5604 0.4418 4.4525 10 6 3.6900 0.9119 5.5893 11 1 2.6160 0.9275 5.4765 12 6 4.2648 1.3231 6.7732 13 7 5.5727 1.3046 6.9105 14 14 3.1860 1.9065 8.1822 15 1 2.2691 0.8118 8.5898 16 1 4.0409 2.2902 9.3342 17 1 2.3902 3.0808 7.7429 18 6 4.1060 -1.4255 -0.0316 19 6 3.5709 -0.6940 -1.2665 20 6 2.0408 -0.7227 -1.2485 21 1 1.6577 -0.2240 -2.1388 22 7 1.5790 -2.1130 -1.2310 23 6 1.4496 -2.7947 -2.3863 24 8 1.7155 -2.2561 -3.4426 25 8 1.0246 -4.0722 -2.3703 26 6 0.9094 -4.7448 -3.6519 27 6 2.2773 -4.7751 -4.3368 28 6 0.4169 -6.1768 -3.4339 29 6 -0.0867 -3.9913 -4.5355 30 1 -0.3632 -1.0277 0.0005 31 1 -0.3633 0.5148 0.8894 32 1 -0.3633 0.5128 -0.8906 33 1 1.6096 -1.7284 1.2983 34 1 1.7637 -0.1664 2.1431 35 1 2.7522 0.1390 3.3816 36 1 5.1445 -0.4203 4.7747 37 1 5.2333 1.2455 4.1536 38 1 5.9771 1.5935 7.7435 39 1 5.1903 -1.3230 0.0127 40 1 3.8387 -2.4808 -0.0875 41 1 3.9155 0.3400 -1.2546 42 1 3.9335 -1.1884 -2.1678 43 1 1.3664 -2.5428 -0.3878 44 1 2.9870 -5.3119 -3.7073 45 1 2.1907 -5.2796 -5.2991 46 1 2.6286 -3.7550 -4.4920 47 1 -0.5574 -6.1556 -2.9459 48 1 0.3309 -6.6818 -4.3961 49 1 1.1270 -6.7133 -2.8046 50 1 0.2646 -2.9711 -4.6909 51 1 -0.1729 -4.4959 -5.4979 52 1 -1.0612 -3.9697 -4.0477 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000787358685.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:22:40 Heat of formation + Delta-G solvation = -138.071866 kcal Electronic energy + Delta-G solvation = -31354.325783 eV Core-core repulsion = 27159.950368 eV Total energy + Delta-G solvation = -4194.375415 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 341.215 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -42.07136 -41.30280 -39.61712 -37.76013 -36.23345 -35.58295 -34.94202 -34.38411 -33.60890 -32.16025 -29.20731 -28.31268 -28.25551 -27.64716 -26.44443 -24.76722 -23.83279 -22.91187 -21.50488 -21.11455 -20.30323 -19.52809 -19.25170 -18.01997 -17.53260 -17.36010 -17.19431 -16.72512 -16.53000 -16.08188 -15.88287 -15.53034 -15.27413 -15.16507 -14.89626 -14.85622 -14.64540 -14.39185 -14.04006 -13.92115 -13.65266 -13.29917 -13.18897 -13.10753 -12.94047 -12.86545 -12.81844 -12.76751 -12.68052 -12.58883 -12.49562 -12.25303 -12.19068 -11.97083 -11.92643 -11.68269 -11.47504 -11.32984 -11.09515 -11.04488 -10.77486 -10.20846 -10.01860 -9.38382 -8.26306 -6.42932 1.21120 1.44760 1.49346 1.57117 1.74408 1.83155 2.20347 2.40143 3.08521 3.13417 3.20086 3.50846 3.72460 3.79901 3.83027 3.85271 3.99591 3.99821 4.18907 4.25325 4.38604 4.57076 4.57307 4.65915 4.67639 4.72995 4.75713 4.81300 4.85313 4.86738 4.91725 4.92325 5.01193 5.08028 5.10138 5.12997 5.18104 5.28736 5.31844 5.33001 5.39479 5.44729 5.49061 5.57654 5.63544 5.71718 5.86347 6.10360 6.43960 6.68255 7.18454 7.27168 7.39738 7.70052 8.85750 Molecular weight = 341.21amu Principal moments of inertia in cm(-1) A = 0.021228 B = 0.002207 C = 0.002158 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1318.724455 B =12683.984290 C =12970.648519 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.104 4.104 3 H 0.092 0.908 4 C 0.108 3.892 5 N -0.625 5.625 6 C 0.694 3.306 7 O -0.648 6.648 8 N -0.722 5.722 9 C 0.286 3.714 10 C -0.553 4.553 11 H 0.084 0.916 12 C 0.003 3.997 13 N -0.931 5.931 14 Si 0.986 3.014 15 H -0.261 1.261 16 H -0.287 1.287 17 H -0.261 1.261 18 C 0.134 3.866 19 C -0.138 4.138 20 C 0.179 3.821 21 H 0.096 0.904 22 N -0.692 5.692 23 C 0.649 3.351 24 O -0.589 6.589 25 O -0.371 6.371 26 C 0.126 3.874 27 C -0.180 4.180 28 C -0.137 4.137 29 C -0.178 4.178 30 H 0.065 0.935 31 H 0.071 0.929 32 H 0.065 0.935 33 H 0.089 0.911 34 H 0.089 0.911 35 H 0.403 0.597 36 H -0.016 1.016 37 H -0.016 1.016 38 H 0.268 0.732 39 H 0.066 0.934 40 H 0.073 0.927 41 H 0.076 0.924 42 H 0.079 0.921 43 H 0.411 0.589 44 H 0.057 0.943 45 H 0.088 0.912 46 H 0.064 0.936 47 H 0.070 0.930 48 H 0.100 0.900 49 H 0.065 0.935 50 H 0.064 0.936 51 H 0.087 0.913 52 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.765 -11.575 -22.289 30.763 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.123 4.123 3 H 0.111 0.889 4 C -0.014 4.014 5 N -0.362 5.362 6 C 0.395 3.605 7 O -0.531 6.531 8 N -0.378 5.378 9 C 0.162 3.838 10 C -0.591 4.591 11 H 0.102 0.898 12 C -0.196 4.196 13 N -0.569 5.569 14 Si 0.809 3.191 15 H -0.185 1.185 16 H -0.213 1.213 17 H -0.186 1.186 18 C 0.011 3.989 19 C -0.178 4.178 20 C 0.076 3.924 21 H 0.114 0.886 22 N -0.353 5.353 23 C 0.402 3.598 24 O -0.480 6.480 25 O -0.286 6.286 26 C 0.090 3.910 27 C -0.237 4.237 28 C -0.194 4.194 29 C -0.235 4.235 30 H 0.084 0.916 31 H 0.090 0.910 32 H 0.084 0.916 33 H 0.107 0.893 34 H 0.107 0.893 35 H 0.241 0.759 36 H 0.002 0.998 37 H 0.002 0.998 38 H 0.077 0.923 39 H 0.084 0.916 40 H 0.092 0.908 41 H 0.095 0.905 42 H 0.098 0.902 43 H 0.249 0.751 44 H 0.076 0.924 45 H 0.107 0.893 46 H 0.083 0.917 47 H 0.089 0.911 48 H 0.119 0.881 49 H 0.084 0.916 50 H 0.083 0.917 51 H 0.106 0.894 52 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -16.644 -11.365 -22.782 30.417 hybrid contribution 0.034 0.282 1.141 1.176 sum -16.610 -11.083 -21.641 29.446 Atomic orbital electron populations 1.21743 0.91775 1.03030 1.03222 1.21842 0.97948 1.00089 0.92468 0.88931 1.22046 0.78176 1.01984 0.99241 1.47256 1.06692 1.64632 1.17632 1.16234 0.84873 0.78361 0.81034 1.90827 1.14997 1.64695 1.82551 1.45453 1.10718 1.68725 1.12870 1.18401 0.90099 0.92694 0.82583 1.21540 0.94214 1.45148 0.98182 0.89759 1.26075 0.96519 0.95178 1.01873 1.70145 1.11761 1.47433 1.27598 0.85197 0.77940 0.79173 0.76834 1.18541 1.21287 1.18591 1.21358 0.98466 0.96501 0.82618 1.22274 0.96155 1.01930 0.97411 1.20867 0.92641 0.79400 0.99541 0.88617 1.44819 1.69986 1.13450 1.07032 1.18220 0.76346 0.80637 0.84552 1.90893 1.56340 1.70277 1.30501 1.86319 1.79985 1.24437 1.37848 1.22358 0.96480 0.92774 0.79380 1.22474 0.95856 1.03676 1.01738 1.21886 1.02143 0.91132 1.04257 1.22456 0.98477 1.02085 1.00465 0.91635 0.90952 0.91616 0.89320 0.89289 0.75909 0.99793 0.99833 0.92294 0.91577 0.90843 0.90527 0.90201 0.75145 0.92357 0.89328 0.91730 0.91120 0.88137 0.91551 0.91691 0.89406 0.91876 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.60 9.06 71.98 0.65 -0.95 16 2 C -0.10 -1.62 2.68 -10.57 -0.03 -1.65 16 3 H 0.09 1.60 8.14 -2.39 -0.02 1.58 16 4 C 0.11 2.12 5.41 86.51 0.47 2.59 16 5 N -0.62 -18.33 2.97 -836.06 -2.48 -20.80 16 6 C 0.69 29.34 8.30 179.05 1.49 30.83 16 7 O -0.65 -34.15 15.77 -3.98 -0.06 -34.21 16 8 N -0.72 -31.19 5.46 -482.30 -2.63 -33.82 16 9 C 0.29 15.88 5.43 85.63 0.47 16.35 16 10 C -0.55 -29.88 9.28 25.60 0.24 -29.65 16 11 H 0.08 4.06 7.60 -2.91 -0.02 4.04 16 12 C 0.00 0.17 5.46 84.65 0.46 0.64 16 13 N -0.93 -56.23 13.29 21.45 0.28 -55.95 16 14 Si 0.99 41.85 29.54 68.60 2.03 43.87 16 15 H -0.26 -10.42 7.11 99.48 0.71 -9.71 16 16 H -0.29 -12.19 7.11 99.48 0.71 -11.48 16 17 H -0.26 -10.46 7.11 99.48 0.71 -9.75 16 18 C 0.13 3.54 6.18 86.36 0.53 4.08 16 19 C -0.14 -2.96 5.77 30.67 0.18 -2.78 16 20 C 0.18 3.09 2.21 45.02 0.10 3.19 16 21 H 0.10 1.74 7.57 -2.39 -0.02 1.72 16 22 N -0.69 -11.45 3.60 -570.00 -2.05 -13.50 16 23 C 0.65 13.30 8.02 129.79 1.04 14.34 16 24 O -0.59 -14.60 11.54 19.81 0.23 -14.37 16 25 O -0.37 -7.03 9.94 -55.52 -0.55 -7.58 16 26 C 0.13 1.92 1.13 -10.79 -0.01 1.91 16 27 C -0.18 -2.85 8.37 71.98 0.60 -2.25 16 28 C -0.14 -1.35 8.85 71.98 0.64 -0.72 16 29 C -0.18 -2.57 8.37 71.98 0.60 -1.96 16 30 H 0.06 0.67 7.54 -2.39 -0.02 0.65 16 31 H 0.07 0.76 8.14 -2.39 -0.02 0.74 16 32 H 0.06 0.73 8.14 -2.39 -0.02 0.71 16 33 H 0.09 1.34 6.63 -2.39 -0.02 1.32 16 34 H 0.09 1.78 5.64 -2.39 -0.01 1.76 16 35 H 0.40 14.23 5.81 -92.71 -0.54 13.69 16 36 H -0.02 -0.99 8.14 -2.38 -0.02 -1.01 16 37 H -0.02 -1.03 8.14 -2.38 -0.02 -1.05 16 38 H 0.27 15.17 8.31 -92.71 -0.77 14.40 16 39 H 0.07 2.17 7.00 -2.39 -0.02 2.15 16 40 H 0.07 1.73 7.74 -2.39 -0.02 1.71 16 41 H 0.08 1.74 8.14 -2.39 -0.02 1.72 16 42 H 0.08 1.75 8.14 -2.39 -0.02 1.73 16 43 H 0.41 5.73 6.83 -92.70 -0.63 5.09 16 44 H 0.06 0.92 8.14 -2.39 -0.02 0.91 16 45 H 0.09 1.01 8.14 -2.39 -0.02 0.99 16 46 H 0.06 1.36 5.88 -2.39 -0.01 1.35 16 47 H 0.07 0.66 8.14 -2.39 -0.02 0.64 16 48 H 0.10 0.58 8.14 -2.38 -0.02 0.56 16 49 H 0.07 0.68 8.14 -2.39 -0.02 0.66 16 50 H 0.06 1.28 5.88 -2.38 -0.01 1.27 16 51 H 0.09 0.91 8.14 -2.38 -0.02 0.89 16 52 H 0.06 0.85 8.14 -2.39 -0.02 0.83 16 Total: -1.00 -76.23 404.35 1.94 -74.29 By element: Atomic # 1 Polarization: 28.34 SS G_CDS: -0.24 Total: 28.10 kcal Atomic # 6 Polarization: 26.55 SS G_CDS: 7.42 Total: 33.97 kcal Atomic # 7 Polarization: -117.20 SS G_CDS: -6.88 Total: -124.07 kcal Atomic # 8 Polarization: -55.77 SS G_CDS: -0.39 Total: -56.16 kcal Atomic # 14 Polarization: 41.85 SS G_CDS: 2.03 Total: 43.87 kcal Total: -76.23 1.94 -74.29 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000787358685.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -63.779 kcal (2) G-P(sol) polarization free energy of solvation -76.233 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -140.012 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.940 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.293 kcal (6) G-S(sol) free energy of system = (1) + (5) -138.072 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds