Wall clock time and date at job start Wed Apr 1 2020 01:22:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.08996 * 109.49935 * 2 1 4 4 C 1.53189 * 109.49926 * 239.89721 * 2 1 3 5 5 N 1.46926 * 108.77902 * 185.41330 * 4 2 1 6 6 C 1.34770 * 120.63276 * 233.59146 * 5 4 2 7 7 O 1.21587 * 120.00134 * 354.96142 * 6 5 4 8 8 N 1.34773 * 120.00189 * 174.96117 * 6 5 4 9 9 C 1.46504 * 120.00525 * 185.06830 * 8 6 5 10 10 C 1.50692 * 109.47417 * 180.02562 * 9 8 6 11 11 H 1.08005 * 120.00484 * 0.02562 * 10 9 8 12 12 C 1.37878 * 120.00248 * 180.02562 * 10 9 8 13 13 N 1.31516 * 119.99682 * 0.02562 * 12 10 9 14 14 Si 1.86795 * 120.00272 * 180.02562 * 12 10 9 15 15 H 1.48501 * 109.47468 * 59.99874 * 14 12 10 16 16 H 1.48506 * 109.46999 * 179.97438 * 14 12 10 17 17 H 1.48500 * 109.47449 * 299.99861 * 14 12 10 18 18 C 1.46929 * 118.73620 * 53.61077 * 5 4 2 19 19 C 1.53191 * 108.77543 * 306.39051 * 18 5 4 20 20 C 1.53043 * 109.31245 * 54.63721 * 19 18 5 21 21 H 1.09002 * 109.44898 * 58.64754 * 20 19 18 22 22 N 1.46501 * 109.46024 * 178.61268 * 20 19 18 23 23 C 1.34779 * 120.00113 * 275.06438 * 22 20 19 24 24 O 1.21509 * 119.99925 * 0.02562 * 23 22 20 25 25 O 1.34630 * 119.99892 * 180.02562 * 23 22 20 26 26 C 1.45208 * 116.99996 * 180.02562 * 25 23 22 27 27 C 1.52999 * 109.47055 * 59.99839 * 26 25 23 28 28 C 1.52994 * 109.46937 * 299.99882 * 26 25 23 29 29 C 1.52998 * 109.47137 * 179.97438 * 26 25 23 30 30 H 1.09003 * 109.47004 * 299.94171 * 1 2 3 31 31 H 1.08999 * 109.47094 * 59.93562 * 1 2 3 32 32 H 1.08998 * 109.47310 * 179.97438 * 1 2 3 33 33 H 1.08999 * 109.58884 * 305.20577 * 4 2 1 34 34 H 1.09004 * 109.58250 * 65.48364 * 4 2 1 35 35 H 0.97009 * 120.00168 * 5.07579 * 8 6 5 36 36 H 1.08997 * 109.46756 * 300.00565 * 9 8 6 37 37 H 1.09004 * 109.46687 * 59.99973 * 9 8 6 38 38 H 0.96998 * 120.00170 * 180.02562 * 13 12 10 39 39 H 1.09003 * 109.58574 * 66.17947 * 18 5 4 40 40 H 1.08998 * 109.58813 * 186.46295 * 18 5 4 41 41 H 1.08998 * 109.50007 * 294.68409 * 19 18 5 42 42 H 1.08995 * 109.49614 * 174.58217 * 19 18 5 43 43 H 0.96998 * 119.99760 * 95.06913 * 22 20 19 44 44 H 1.09003 * 109.46927 * 299.99965 * 27 26 25 45 45 H 1.08995 * 109.46892 * 180.02562 * 27 26 25 46 46 H 1.08999 * 109.47394 * 59.99874 * 27 26 25 47 47 H 1.08995 * 109.47292 * 179.97438 * 28 26 25 48 48 H 1.09003 * 109.47180 * 300.00476 * 28 26 25 49 49 H 1.09003 * 109.47376 * 59.99832 * 28 26 25 50 50 H 1.09002 * 109.47352 * 299.99839 * 29 26 25 51 51 H 1.09001 * 109.47257 * 60.00198 * 29 26 25 52 52 H 1.08995 * 109.46945 * 179.97438 * 29 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8938 1.0274 0.0000 4 6 2.0413 -0.7243 -1.2493 5 7 3.5046 -0.8296 -1.1693 6 6 4.2811 -0.3872 -2.1781 7 8 3.7713 0.0202 -3.2040 8 7 5.6227 -0.3963 -2.0497 9 6 6.4630 0.1863 -3.0989 10 6 7.9137 0.0482 -2.7152 11 1 8.1830 -0.4264 -1.7832 12 6 8.8973 0.5278 -3.5539 13 7 8.5694 1.1062 -4.6886 14 14 10.6956 0.3560 -3.0786 15 1 11.0302 -1.0820 -2.9187 16 1 11.5473 0.9466 -4.1422 17 1 10.9391 1.0662 -1.7974 18 6 4.1053 -1.4268 0.0313 19 6 3.5708 -0.6946 1.2663 20 6 2.0408 -0.7227 1.2486 21 1 1.6969 -1.7570 1.2358 22 7 1.5265 -0.0522 2.4454 23 6 1.3984 -0.7371 3.5991 24 8 1.7098 -1.9106 3.6467 25 8 0.9253 -0.1210 4.6987 26 6 0.8146 -0.9201 5.9060 27 6 2.1959 -1.4512 6.2944 28 6 -0.1315 -2.0958 5.6543 29 6 0.2635 -0.0553 7.0413 30 1 -0.3633 0.5129 0.8905 31 1 -0.3633 0.5148 -0.8894 32 1 -0.3634 -1.0276 -0.0005 33 1 1.6052 -1.7221 -1.2974 34 1 1.7615 -0.1600 -2.1389 35 1 6.0320 -0.7886 -1.2626 36 1 6.2848 -0.3360 -4.0389 37 1 6.2169 1.2416 -3.2174 38 1 9.2614 1.4432 -5.2789 39 1 3.8375 -2.4819 0.0876 40 1 5.1897 -1.3269 -0.0144 41 1 3.9159 0.3392 1.2540 42 1 3.9333 -1.1890 2.1675 43 1 1.2781 0.8847 2.4074 44 1 2.5889 -2.0672 5.4856 45 1 2.1127 -2.0514 7.2004 46 1 2.8700 -0.6136 6.4737 47 1 -0.2143 -2.6960 6.5604 48 1 -1.1156 -1.7175 5.3775 49 1 0.2615 -2.7119 4.8455 50 1 0.9379 0.7821 7.2205 51 1 -0.7206 0.3234 6.7649 52 1 0.1800 -0.6553 7.9474 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000787358687.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:22:47 Heat of formation + Delta-G solvation = -117.966668 kcal Electronic energy + Delta-G solvation = -30958.700607 eV Core-core repulsion = 26765.197019 eV Total energy + Delta-G solvation = -4193.503588 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 341.215 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.12336 -40.04644 -38.37885 -36.88599 -34.85593 -34.30294 -34.18625 -33.01451 -32.08334 -30.93149 -27.75674 -27.69428 -27.62067 -26.51942 -25.07571 -22.87787 -22.44218 -22.06251 -20.76977 -20.12236 -19.21648 -18.37313 -18.00580 -16.95904 -16.37899 -16.08383 -15.84822 -15.64533 -15.05126 -14.96499 -14.71598 -14.66000 -14.35852 -14.00560 -13.82135 -13.69057 -13.24720 -13.13120 -12.88411 -12.82135 -12.54664 -12.33717 -12.23330 -12.21791 -12.14262 -11.91083 -11.82283 -11.73589 -11.64541 -11.55490 -11.20526 -11.13388 -10.95415 -10.86048 -10.66181 -10.60602 -10.28021 -10.26672 -9.43305 -9.38187 -9.28671 -8.71957 -8.44424 -7.72856 -6.14105 -4.20702 1.91549 2.63262 3.14568 3.26653 3.31649 3.33606 3.79810 3.94416 4.30640 4.34754 4.37733 4.41968 4.56294 4.56928 4.68041 4.80915 4.96033 5.11905 5.13398 5.16687 5.19801 5.21826 5.26360 5.30810 5.34459 5.43017 5.47235 5.52606 5.52809 5.60870 5.64599 5.67426 5.79420 5.87393 5.93007 5.96367 5.97609 5.98636 6.10025 6.23096 6.30069 6.74786 7.12212 7.20050 7.51758 7.54113 7.58564 7.85993 8.03175 8.16957 8.76290 8.90397 9.32008 9.48299 10.96039 Molecular weight = 341.21amu Principal moments of inertia in cm(-1) A = 0.015558 B = 0.002251 C = 0.002034 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1799.322243 B =12437.350704 C =13762.379726 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.115 4.115 3 H 0.083 0.917 4 C 0.142 3.858 5 N -0.640 5.640 6 C 0.698 3.302 7 O -0.598 6.598 8 N -0.729 5.729 9 C 0.266 3.734 10 C -0.542 4.542 11 H 0.061 0.939 12 C 0.064 3.936 13 N -0.885 5.885 14 Si 0.904 3.096 15 H -0.275 1.275 16 H -0.285 1.285 17 H -0.276 1.276 18 C 0.117 3.883 19 C -0.147 4.147 20 C 0.170 3.830 21 H 0.094 0.906 22 N -0.704 5.704 23 C 0.650 3.350 24 O -0.567 6.567 25 O -0.367 6.367 26 C 0.137 3.863 27 C -0.184 4.184 28 C -0.183 4.183 29 C -0.141 4.141 30 H 0.057 0.943 31 H 0.063 0.937 32 H 0.058 0.942 33 H 0.063 0.937 34 H 0.099 0.901 35 H 0.386 0.614 36 H 0.026 0.974 37 H 0.024 0.976 38 H 0.266 0.734 39 H 0.068 0.932 40 H 0.086 0.914 41 H 0.073 0.927 42 H 0.080 0.920 43 H 0.405 0.595 44 H 0.089 0.911 45 H 0.069 0.931 46 H 0.059 0.941 47 H 0.069 0.931 48 H 0.058 0.942 49 H 0.088 0.912 50 H 0.066 0.934 51 H 0.066 0.934 52 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.793 -3.871 22.688 29.713 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.135 4.135 3 H 0.102 0.898 4 C 0.017 3.983 5 N -0.380 5.380 6 C 0.399 3.601 7 O -0.477 6.477 8 N -0.383 5.383 9 C 0.145 3.855 10 C -0.580 4.580 11 H 0.079 0.921 12 C -0.140 4.140 13 N -0.522 5.522 14 Si 0.731 3.269 15 H -0.201 1.201 16 H -0.211 1.211 17 H -0.201 1.201 18 C -0.007 4.007 19 C -0.186 4.186 20 C 0.067 3.933 21 H 0.112 0.888 22 N -0.362 5.362 23 C 0.404 3.596 24 O -0.456 6.456 25 O -0.282 6.282 26 C 0.100 3.900 27 C -0.241 4.241 28 C -0.240 4.240 29 C -0.198 4.198 30 H 0.076 0.924 31 H 0.082 0.918 32 H 0.077 0.923 33 H 0.081 0.919 34 H 0.118 0.882 35 H 0.221 0.779 36 H 0.044 0.956 37 H 0.042 0.958 38 H 0.076 0.924 39 H 0.086 0.914 40 H 0.104 0.896 41 H 0.091 0.909 42 H 0.098 0.902 43 H 0.239 0.761 44 H 0.107 0.893 45 H 0.088 0.912 46 H 0.078 0.922 47 H 0.088 0.912 48 H 0.077 0.923 49 H 0.107 0.893 50 H 0.085 0.915 51 H 0.085 0.915 52 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -18.891 -4.044 21.822 29.145 hybrid contribution 1.167 0.182 0.745 1.397 sum -17.724 -3.862 22.567 28.954 Atomic orbital electron populations 1.21762 0.93862 1.02387 1.02208 1.21867 0.96474 1.00968 0.94185 0.89842 1.21320 0.79200 1.00187 0.97560 1.47333 1.05940 1.66236 1.18458 1.16045 0.82315 0.78839 0.82868 1.90860 1.73561 1.54915 1.28361 1.45900 1.03586 1.63092 1.25746 1.18982 0.87465 0.93609 0.85412 1.21174 0.90478 1.40315 1.06068 0.92091 1.24940 0.99539 0.94786 0.94740 1.69968 1.33812 1.38031 1.10431 0.86477 0.83822 0.78457 0.78143 1.20081 1.21084 1.20113 1.21509 0.98633 0.96836 0.83754 1.22371 0.95108 1.02330 0.98820 1.21022 0.93263 0.97496 0.81502 0.88813 1.44890 1.68717 1.14801 1.07799 1.18101 0.76721 0.83833 0.80991 1.90902 1.54920 1.15175 1.84632 1.86302 1.78673 1.44352 1.18875 1.22053 0.96473 0.90601 0.80864 1.22518 0.95718 1.02316 1.03558 1.22514 0.99048 0.98278 1.04193 1.21864 1.01840 1.00168 0.95954 0.92407 0.91783 0.92302 0.91909 0.88240 0.77940 0.95643 0.95840 0.92420 0.91368 0.89575 0.90872 0.90176 0.76058 0.89260 0.91192 0.92153 0.91197 0.92252 0.89291 0.91453 0.91520 0.90160 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.12 9.03 37.16 0.34 -0.79 16 2 C -0.11 -1.11 2.46 -90.50 -0.22 -1.33 16 3 H 0.08 0.87 8.14 -51.93 -0.42 0.44 16 4 C 0.14 1.78 5.70 -3.71 -0.02 1.76 16 5 N -0.64 -9.75 2.97 -178.50 -0.53 -10.28 16 6 C 0.70 14.51 8.30 -86.93 -0.72 13.79 16 7 O -0.60 -14.85 15.79 5.29 0.08 -14.77 16 8 N -0.73 -15.82 5.46 -66.42 -0.36 -16.18 16 9 C 0.27 7.17 5.43 -5.20 -0.03 7.14 16 10 C -0.54 -14.79 9.28 -34.44 -0.32 -15.11 16 11 H 0.06 1.55 7.60 -52.48 -0.40 1.16 16 12 C 0.06 1.77 5.46 -17.82 -0.10 1.68 16 13 N -0.89 -26.16 13.29 55.43 0.74 -25.43 16 14 Si 0.90 20.93 29.54 -169.99 -5.02 15.91 16 15 H -0.28 -6.25 7.11 56.52 0.40 -5.85 16 16 H -0.29 -6.57 7.11 56.52 0.40 -6.17 16 17 H -0.28 -6.24 7.11 56.52 0.40 -5.84 16 18 C 0.12 1.43 6.43 -3.71 -0.02 1.40 16 19 C -0.15 -1.57 5.65 -26.61 -0.15 -1.72 16 20 C 0.17 1.66 1.88 -67.88 -0.13 1.53 16 21 H 0.09 1.00 7.58 -51.93 -0.39 0.61 16 22 N -0.70 -6.35 4.37 -58.68 -0.26 -6.61 16 23 C 0.65 7.02 8.02 54.06 0.43 7.45 16 24 O -0.57 -7.26 11.54 -19.28 -0.22 -7.48 16 25 O -0.37 -3.64 9.94 -40.30 -0.40 -4.04 16 26 C 0.14 1.12 1.13 -90.62 -0.10 1.02 16 27 C -0.18 -1.53 8.37 37.16 0.31 -1.22 16 28 C -0.18 -1.46 8.37 37.15 0.31 -1.15 16 29 C -0.14 -0.81 8.85 37.16 0.33 -0.49 16 30 H 0.06 0.40 7.36 -51.93 -0.38 0.02 16 31 H 0.06 0.49 8.14 -51.93 -0.42 0.06 16 32 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 33 H 0.06 0.70 8.14 -51.93 -0.42 0.27 16 34 H 0.10 1.44 7.04 -51.93 -0.37 1.07 16 35 H 0.39 7.26 5.78 -40.82 -0.24 7.02 16 36 H 0.03 0.76 8.14 -51.93 -0.42 0.34 16 37 H 0.02 0.70 8.14 -51.93 -0.42 0.27 16 38 H 0.27 7.39 8.31 -40.82 -0.34 7.05 16 39 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 40 H 0.09 1.07 5.56 -51.93 -0.29 0.78 16 41 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 42 H 0.08 0.87 8.14 -51.93 -0.42 0.44 16 43 H 0.40 2.99 8.42 -40.82 -0.34 2.65 16 44 H 0.09 0.95 5.88 -51.93 -0.31 0.64 16 45 H 0.07 0.46 8.14 -51.93 -0.42 0.03 16 46 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 47 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 48 H 0.06 0.45 8.14 -51.93 -0.42 0.02 16 49 H 0.09 0.91 5.88 -51.93 -0.31 0.61 16 50 H 0.07 0.38 8.14 -51.93 -0.42 -0.04 16 51 H 0.07 0.37 8.14 -51.93 -0.42 -0.06 16 52 H 0.08 0.33 8.14 -51.93 -0.42 -0.09 16 LS Contribution 408.25 15.07 6.15 6.15 Total: -1.00 -33.61 408.25 -8.83 -42.45 By element: Atomic # 1 Polarization: 15.22 SS G_CDS: -8.92 Total: 6.30 kcal Atomic # 6 Polarization: 14.07 SS G_CDS: -0.09 Total: 13.97 kcal Atomic # 7 Polarization: -58.08 SS G_CDS: -0.41 Total: -58.49 kcal Atomic # 8 Polarization: -25.75 SS G_CDS: -0.54 Total: -26.29 kcal Atomic # 14 Polarization: 20.93 SS G_CDS: -5.02 Total: 15.91 kcal Total LS contribution 6.15 Total: 6.15 kcal Total: -33.61 -8.83 -42.45 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000787358687.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -75.519 kcal (2) G-P(sol) polarization free energy of solvation -33.614 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -109.133 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.833 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.448 kcal (6) G-S(sol) free energy of system = (1) + (5) -117.967 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds