Wall clock time and date at job start Wed Apr 1 2020 01:22:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.08996 * 109.49935 * 2 1 4 4 C 1.53189 * 109.49926 * 239.89721 * 2 1 3 5 5 N 1.46926 * 108.77902 * 185.41330 * 4 2 1 6 6 C 1.34770 * 120.63276 * 233.59146 * 5 4 2 7 7 O 1.21587 * 120.00134 * 354.96142 * 6 5 4 8 8 N 1.34773 * 120.00189 * 174.96117 * 6 5 4 9 9 C 1.46504 * 120.00525 * 185.06830 * 8 6 5 10 10 C 1.50692 * 109.47417 * 180.02562 * 9 8 6 11 11 H 1.08005 * 120.00484 * 0.02562 * 10 9 8 12 12 C 1.37878 * 120.00248 * 180.02562 * 10 9 8 13 13 N 1.31516 * 119.99682 * 0.02562 * 12 10 9 14 14 Si 1.86795 * 120.00272 * 180.02562 * 12 10 9 15 15 H 1.48501 * 109.47468 * 59.99874 * 14 12 10 16 16 H 1.48506 * 109.46999 * 179.97438 * 14 12 10 17 17 H 1.48500 * 109.47449 * 299.99861 * 14 12 10 18 18 C 1.46929 * 118.73620 * 53.61077 * 5 4 2 19 19 C 1.53191 * 108.77543 * 306.39051 * 18 5 4 20 20 C 1.53043 * 109.31245 * 54.63721 * 19 18 5 21 21 H 1.09002 * 109.44898 * 58.64754 * 20 19 18 22 22 N 1.46501 * 109.46024 * 178.61268 * 20 19 18 23 23 C 1.34779 * 120.00113 * 275.06438 * 22 20 19 24 24 O 1.21509 * 119.99925 * 0.02562 * 23 22 20 25 25 O 1.34630 * 119.99892 * 180.02562 * 23 22 20 26 26 C 1.45208 * 116.99996 * 180.02562 * 25 23 22 27 27 C 1.52999 * 109.47055 * 59.99839 * 26 25 23 28 28 C 1.52994 * 109.46937 * 299.99882 * 26 25 23 29 29 C 1.52998 * 109.47137 * 179.97438 * 26 25 23 30 30 H 1.09003 * 109.47004 * 299.94171 * 1 2 3 31 31 H 1.08999 * 109.47094 * 59.93562 * 1 2 3 32 32 H 1.08998 * 109.47310 * 179.97438 * 1 2 3 33 33 H 1.08999 * 109.58884 * 305.20577 * 4 2 1 34 34 H 1.09004 * 109.58250 * 65.48364 * 4 2 1 35 35 H 0.97009 * 120.00168 * 5.07579 * 8 6 5 36 36 H 1.08997 * 109.46756 * 300.00565 * 9 8 6 37 37 H 1.09004 * 109.46687 * 59.99973 * 9 8 6 38 38 H 0.96998 * 120.00170 * 180.02562 * 13 12 10 39 39 H 1.09003 * 109.58574 * 66.17947 * 18 5 4 40 40 H 1.08998 * 109.58813 * 186.46295 * 18 5 4 41 41 H 1.08998 * 109.50007 * 294.68409 * 19 18 5 42 42 H 1.08995 * 109.49614 * 174.58217 * 19 18 5 43 43 H 0.96998 * 119.99760 * 95.06913 * 22 20 19 44 44 H 1.09003 * 109.46927 * 299.99965 * 27 26 25 45 45 H 1.08995 * 109.46892 * 180.02562 * 27 26 25 46 46 H 1.08999 * 109.47394 * 59.99874 * 27 26 25 47 47 H 1.08995 * 109.47292 * 179.97438 * 28 26 25 48 48 H 1.09003 * 109.47180 * 300.00476 * 28 26 25 49 49 H 1.09003 * 109.47376 * 59.99832 * 28 26 25 50 50 H 1.09002 * 109.47352 * 299.99839 * 29 26 25 51 51 H 1.09001 * 109.47257 * 60.00198 * 29 26 25 52 52 H 1.08995 * 109.46945 * 179.97438 * 29 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8938 1.0274 0.0000 4 6 2.0413 -0.7243 -1.2493 5 7 3.5046 -0.8296 -1.1693 6 6 4.2811 -0.3872 -2.1781 7 8 3.7713 0.0202 -3.2040 8 7 5.6227 -0.3963 -2.0497 9 6 6.4630 0.1863 -3.0989 10 6 7.9137 0.0482 -2.7152 11 1 8.1830 -0.4264 -1.7832 12 6 8.8973 0.5278 -3.5539 13 7 8.5694 1.1062 -4.6886 14 14 10.6956 0.3560 -3.0786 15 1 11.0302 -1.0820 -2.9187 16 1 11.5473 0.9466 -4.1422 17 1 10.9391 1.0662 -1.7974 18 6 4.1053 -1.4268 0.0313 19 6 3.5708 -0.6946 1.2663 20 6 2.0408 -0.7227 1.2486 21 1 1.6969 -1.7570 1.2358 22 7 1.5265 -0.0522 2.4454 23 6 1.3984 -0.7371 3.5991 24 8 1.7098 -1.9106 3.6467 25 8 0.9253 -0.1210 4.6987 26 6 0.8146 -0.9201 5.9060 27 6 2.1959 -1.4512 6.2944 28 6 -0.1315 -2.0958 5.6543 29 6 0.2635 -0.0553 7.0413 30 1 -0.3633 0.5129 0.8905 31 1 -0.3633 0.5148 -0.8894 32 1 -0.3634 -1.0276 -0.0005 33 1 1.6052 -1.7221 -1.2974 34 1 1.7615 -0.1600 -2.1389 35 1 6.0320 -0.7886 -1.2626 36 1 6.2848 -0.3360 -4.0389 37 1 6.2169 1.2416 -3.2174 38 1 9.2614 1.4432 -5.2789 39 1 3.8375 -2.4819 0.0876 40 1 5.1897 -1.3269 -0.0144 41 1 3.9159 0.3392 1.2540 42 1 3.9333 -1.1890 2.1675 43 1 1.2781 0.8847 2.4074 44 1 2.5889 -2.0672 5.4856 45 1 2.1127 -2.0514 7.2004 46 1 2.8700 -0.6136 6.4737 47 1 -0.2143 -2.6960 6.5604 48 1 -1.1156 -1.7175 5.3775 49 1 0.2615 -2.7119 4.8455 50 1 0.9379 0.7821 7.2205 51 1 -0.7206 0.3234 6.7649 52 1 0.1800 -0.6553 7.9474 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000787358687.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:22:46 Heat of formation + Delta-G solvation = -141.048309 kcal Electronic energy + Delta-G solvation = -30959.701502 eV Core-core repulsion = 26765.197019 eV Total energy + Delta-G solvation = -4194.504483 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 341.215 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -41.96042 -41.32866 -39.52580 -37.83784 -36.21458 -35.89741 -35.01921 -34.40819 -33.58173 -31.99011 -29.42806 -28.31654 -28.25981 -27.58798 -26.31773 -24.46023 -23.72212 -22.95379 -21.69810 -21.11760 -20.60191 -19.62562 -19.02839 -18.08754 -17.66690 -17.38701 -17.11683 -16.60244 -16.53202 -16.43597 -15.74923 -15.46830 -15.38443 -15.08724 -15.02507 -14.69879 -14.51630 -14.38190 -14.06301 -13.75773 -13.70979 -13.30199 -13.25628 -13.12103 -12.94248 -12.92524 -12.85678 -12.81961 -12.67725 -12.56076 -12.49582 -12.26548 -12.23349 -12.09200 -11.96127 -11.50845 -11.48888 -11.33796 -11.15761 -11.05216 -10.78610 -10.17935 -10.05121 -9.41864 -8.27489 -6.43942 1.17618 1.43413 1.47857 1.55665 1.75111 1.81430 2.21096 2.38968 3.07097 3.13138 3.15323 3.52381 3.69851 3.79464 3.84440 3.85954 3.99074 4.01680 4.22259 4.28579 4.38594 4.53958 4.62128 4.65032 4.65803 4.67969 4.78712 4.80889 4.81607 4.86658 4.89059 4.92055 5.00151 5.06017 5.09758 5.12195 5.20862 5.28411 5.29415 5.32705 5.35122 5.43173 5.47862 5.57244 5.62070 5.72372 5.85652 6.09566 6.44149 6.66974 7.16863 7.25916 7.38747 7.69138 8.84495 Molecular weight = 341.21amu Principal moments of inertia in cm(-1) A = 0.015558 B = 0.002251 C = 0.002034 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1799.322243 B =12437.350704 C =13762.379726 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.102 4.102 3 H 0.078 0.922 4 C 0.136 3.864 5 N -0.628 5.628 6 C 0.695 3.305 7 O -0.645 6.645 8 N -0.725 5.725 9 C 0.286 3.714 10 C -0.555 4.555 11 H 0.081 0.919 12 C 0.005 3.995 13 N -0.929 5.929 14 Si 0.985 3.015 15 H -0.263 1.263 16 H -0.285 1.285 17 H -0.262 1.262 18 C 0.113 3.887 19 C -0.138 4.138 20 C 0.179 3.821 21 H 0.091 0.909 22 N -0.694 5.694 23 C 0.648 3.352 24 O -0.588 6.588 25 O -0.371 6.371 26 C 0.126 3.874 27 C -0.181 4.181 28 C -0.179 4.179 29 C -0.137 4.137 30 H 0.070 0.930 31 H 0.065 0.935 32 H 0.063 0.937 33 H 0.084 0.916 34 H 0.077 0.923 35 H 0.401 0.599 36 H -0.015 1.015 37 H -0.014 1.014 38 H 0.269 0.731 39 H 0.089 0.911 40 H 0.084 0.916 41 H 0.067 0.933 42 H 0.084 0.916 43 H 0.414 0.586 44 H 0.064 0.936 45 H 0.088 0.912 46 H 0.059 0.941 47 H 0.088 0.912 48 H 0.062 0.938 49 H 0.064 0.936 50 H 0.067 0.933 51 H 0.069 0.931 52 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.933 -4.534 25.799 32.321 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.122 4.122 3 H 0.096 0.904 4 C 0.013 3.987 5 N -0.366 5.366 6 C 0.396 3.604 7 O -0.528 6.528 8 N -0.381 5.381 9 C 0.163 3.837 10 C -0.593 4.593 11 H 0.099 0.901 12 C -0.195 4.195 13 N -0.567 5.567 14 Si 0.808 3.192 15 H -0.187 1.187 16 H -0.210 1.210 17 H -0.187 1.187 18 C -0.010 4.010 19 C -0.177 4.177 20 C 0.075 3.925 21 H 0.109 0.891 22 N -0.353 5.353 23 C 0.402 3.598 24 O -0.479 6.479 25 O -0.285 6.285 26 C 0.090 3.910 27 C -0.238 4.238 28 C -0.236 4.236 29 C -0.194 4.194 30 H 0.089 0.911 31 H 0.084 0.916 32 H 0.082 0.918 33 H 0.102 0.898 34 H 0.096 0.904 35 H 0.239 0.761 36 H 0.003 0.997 37 H 0.004 0.996 38 H 0.078 0.922 39 H 0.107 0.893 40 H 0.102 0.898 41 H 0.086 0.914 42 H 0.102 0.898 43 H 0.251 0.749 44 H 0.083 0.917 45 H 0.107 0.893 46 H 0.078 0.922 47 H 0.106 0.894 48 H 0.081 0.919 49 H 0.083 0.917 50 H 0.086 0.914 51 H 0.089 0.911 52 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges -19.081 -4.725 25.020 31.818 hybrid contribution 1.103 0.357 -0.179 1.173 sum -17.978 -4.368 24.841 30.973 Atomic orbital electron populations 1.21730 0.91984 1.02997 1.02956 1.21710 0.97828 1.00045 0.92585 0.90406 1.21557 0.77430 1.01493 0.98263 1.47328 1.06707 1.64734 1.17789 1.16207 0.82138 0.78653 0.83407 1.90823 1.74294 1.56916 1.30719 1.45511 1.03899 1.63383 1.25277 1.18404 0.88827 0.91109 0.85400 1.21538 0.90422 1.40431 1.06911 0.90068 1.26050 1.05068 0.93990 0.94414 1.70134 1.35682 1.39068 1.11862 0.85210 0.76878 0.79049 0.78084 1.18740 1.21031 1.18661 1.21740 0.98484 0.97944 0.82802 1.22273 0.95788 1.01737 0.97934 1.20859 0.92519 0.97424 0.81712 0.89055 1.44745 1.68240 1.15152 1.07162 1.18226 0.76571 0.83630 0.81417 1.90901 1.55822 1.16163 1.85021 1.86314 1.78392 1.44715 1.19118 1.22370 0.96568 0.91202 0.80865 1.22477 0.95749 1.02114 1.03435 1.22463 0.98890 0.98067 1.04174 1.21885 1.01792 1.00101 0.95601 0.91134 0.91589 0.91765 0.89832 0.90408 0.76074 0.99677 0.99599 0.92233 0.89314 0.89824 0.91425 0.89763 0.74939 0.91734 0.89330 0.92219 0.89369 0.91914 0.91748 0.91404 0.91148 0.88143 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.90 9.03 71.98 0.65 -1.25 16 2 C -0.10 -1.82 2.46 -10.72 -0.03 -1.85 16 3 H 0.08 1.53 8.14 -2.39 -0.02 1.51 16 4 C 0.14 3.33 5.70 86.36 0.49 3.82 16 5 N -0.63 -18.96 2.97 -836.91 -2.49 -21.45 16 6 C 0.69 29.72 8.30 179.06 1.49 31.20 16 7 O -0.64 -33.62 15.79 -3.99 -0.06 -33.68 16 8 N -0.73 -32.26 5.46 -482.31 -2.63 -34.89 16 9 C 0.29 16.10 5.43 85.63 0.47 16.57 16 10 C -0.56 -30.60 9.28 25.60 0.24 -30.37 16 11 H 0.08 4.05 7.60 -2.91 -0.02 4.03 16 12 C 0.00 0.25 5.46 84.65 0.46 0.72 16 13 N -0.93 -56.39 13.29 21.45 0.28 -56.11 16 14 Si 0.98 42.57 29.54 68.60 2.03 44.60 16 15 H -0.26 -10.78 7.11 99.48 0.71 -10.08 16 16 H -0.28 -12.20 7.11 99.48 0.71 -11.49 16 17 H -0.26 -10.71 7.11 99.48 0.71 -10.00 16 18 C 0.11 2.61 6.43 86.36 0.56 3.16 16 19 C -0.14 -2.74 5.65 30.67 0.17 -2.56 16 20 C 0.18 3.17 1.88 45.02 0.08 3.25 16 21 H 0.09 1.76 7.58 -2.39 -0.02 1.74 16 22 N -0.69 -11.33 4.37 -569.99 -2.49 -13.82 16 23 C 0.65 13.10 8.02 129.79 1.04 14.14 16 24 O -0.59 -14.50 11.54 19.81 0.23 -14.27 16 25 O -0.37 -6.78 9.94 -55.39 -0.55 -7.33 16 26 C 0.13 1.85 1.13 -10.80 -0.01 1.84 16 27 C -0.18 -2.74 8.37 71.98 0.60 -2.14 16 28 C -0.18 -2.55 8.37 71.98 0.60 -1.95 16 29 C -0.14 -1.23 8.85 71.98 0.64 -0.60 16 30 H 0.07 0.82 7.36 -2.39 -0.02 0.80 16 31 H 0.07 0.91 8.14 -2.39 -0.02 0.89 16 32 H 0.06 0.84 8.14 -2.39 -0.02 0.82 16 33 H 0.08 1.73 8.14 -2.39 -0.02 1.71 16 34 H 0.08 2.30 7.04 -2.38 -0.02 2.28 16 35 H 0.40 15.05 5.78 -92.70 -0.54 14.51 16 36 H -0.01 -0.94 8.14 -2.39 -0.02 -0.96 16 37 H -0.01 -0.88 8.14 -2.38 -0.02 -0.90 16 38 H 0.27 15.24 8.31 -92.71 -0.77 14.47 16 39 H 0.09 1.75 8.14 -2.39 -0.02 1.73 16 40 H 0.08 1.98 5.56 -2.39 -0.01 1.97 16 41 H 0.07 1.45 8.14 -2.39 -0.02 1.43 16 42 H 0.08 1.68 8.14 -2.39 -0.02 1.66 16 43 H 0.41 5.30 8.42 -92.71 -0.78 4.52 16 44 H 0.06 1.33 5.88 -2.39 -0.01 1.31 16 45 H 0.09 0.97 8.14 -2.39 -0.02 0.95 16 46 H 0.06 0.89 8.14 -2.39 -0.02 0.87 16 47 H 0.09 0.90 8.14 -2.39 -0.02 0.88 16 48 H 0.06 0.83 8.14 -2.39 -0.02 0.81 16 49 H 0.06 1.27 5.88 -2.39 -0.01 1.26 16 50 H 0.07 0.62 8.14 -2.39 -0.02 0.60 16 51 H 0.07 0.60 8.14 -2.39 -0.02 0.58 16 52 H 0.10 0.50 8.14 -2.39 -0.02 0.48 16 Total: -1.00 -75.95 408.25 1.37 -74.58 By element: Atomic # 1 Polarization: 28.78 SS G_CDS: -0.39 Total: 28.38 kcal Atomic # 6 Polarization: 26.54 SS G_CDS: 7.45 Total: 33.99 kcal Atomic # 7 Polarization: -118.94 SS G_CDS: -7.33 Total: -126.27 kcal Atomic # 8 Polarization: -54.90 SS G_CDS: -0.38 Total: -55.28 kcal Atomic # 14 Polarization: 42.57 SS G_CDS: 2.03 Total: 44.60 kcal Total: -75.95 1.37 -74.58 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000787358687.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -66.467 kcal (2) G-P(sol) polarization free energy of solvation -75.953 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -142.420 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.372 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.581 kcal (6) G-S(sol) free energy of system = (1) + (5) -141.048 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds