Wall clock time and date at job start Wed Apr 1 2020 00:35:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09005 * 109.70024 * 2 1 4 4 C 1.53196 * 109.58439 * 120.34937 * 2 1 3 5 5 C 1.53042 * 109.31092 * 174.42465 * 4 2 1 6 6 H 1.08997 * 109.45691 * 178.63043 * 5 4 2 7 7 N 1.46495 * 109.46355 * 58.65480 * 5 4 2 8 8 C 1.34777 * 120.00308 * 154.99854 * 7 5 4 9 9 O 1.21584 * 119.99611 * 0.02562 * 8 7 5 10 10 N 1.34769 * 120.00364 * 180.02562 * 8 7 5 11 11 C 1.46498 * 120.00173 * 180.02562 * 10 8 7 12 12 C 1.50705 * 109.47084 * 179.97438 * 11 10 8 13 13 H 1.07997 * 119.99772 * 0.02562 * 12 11 10 14 14 C 1.37876 * 119.99723 * 179.97438 * 12 11 10 15 15 N 1.31517 * 119.99641 * 180.02562 * 14 12 11 16 16 Si 1.86799 * 120.00431 * 0.02562 * 14 12 11 17 17 H 1.48499 * 109.46766 * 89.99721 * 16 14 12 18 18 H 1.48498 * 109.47512 * 209.99829 * 16 14 12 19 19 H 1.48503 * 109.46922 * 330.00131 * 16 14 12 20 20 C 1.53045 * 109.53664 * 298.63589 * 5 4 2 21 21 C 1.53191 * 109.31421 * 61.36761 * 20 5 4 22 22 N 1.46926 * 109.58901 * 239.63898 * 2 1 3 23 23 C 1.34779 * 120.62588 * 6.61022 * 22 2 1 24 24 O 1.21508 * 120.00405 * 354.89954 * 23 22 2 25 25 O 1.34633 * 119.99458 * 174.91269 * 23 22 2 26 26 C 1.45205 * 116.99828 * 179.97438 * 25 23 22 27 27 C 1.52997 * 109.47486 * 59.99532 * 26 25 23 28 28 C 1.53007 * 109.47003 * 179.97438 * 26 25 23 29 29 C 1.53003 * 109.46779 * 299.99388 * 26 25 23 30 30 H 1.09000 * 109.47286 * 296.10464 * 1 2 3 31 31 H 1.09006 * 109.46530 * 56.10041 * 1 2 3 32 32 H 1.08996 * 109.47223 * 176.09738 * 1 2 3 33 33 H 1.08994 * 109.49327 * 54.47014 * 4 2 1 34 34 H 1.08995 * 109.49680 * 294.37574 * 4 2 1 35 35 H 0.97005 * 120.00118 * 335.00150 * 7 5 4 36 36 H 0.97005 * 120.00062 * 0.02562 * 10 8 7 37 37 H 1.08998 * 109.47054 * 299.99457 * 11 10 8 38 38 H 1.08999 * 109.47284 * 59.99959 * 11 10 8 39 39 H 0.97006 * 119.99717 * 180.02562 * 15 14 12 40 40 H 1.09001 * 109.49503 * 181.32305 * 20 5 4 41 41 H 1.09001 * 109.49299 * 301.41635 * 20 5 4 42 42 H 1.09001 * 109.58551 * 65.15034 * 21 20 5 43 43 H 1.08997 * 109.58666 * 185.58275 * 21 20 5 44 44 H 1.08993 * 109.47170 * 59.99776 * 27 26 25 45 45 H 1.08991 * 109.47175 * 180.02562 * 27 26 25 46 46 H 1.09001 * 109.46995 * 300.00359 * 27 26 25 47 47 H 1.08997 * 109.47419 * 59.99811 * 28 26 25 48 48 H 1.08997 * 109.46568 * 179.97438 * 28 26 25 49 49 H 1.09001 * 109.46815 * 299.99310 * 28 26 25 50 50 H 1.08993 * 109.47275 * 60.00193 * 29 26 25 51 51 H 1.08998 * 109.47186 * 180.02562 * 29 26 25 52 52 H 1.09003 * 109.46935 * 300.00065 * 29 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8975 1.0262 0.0000 4 6 2.0435 -0.7293 1.2455 5 6 3.5675 -0.8478 1.1703 6 1 3.9377 -1.3448 2.0670 7 7 4.1570 0.4899 1.0750 8 6 5.4211 0.7005 1.4924 9 8 6.0723 -0.2198 1.9476 10 7 5.9633 1.9313 1.4052 11 6 7.3375 2.1601 1.8583 12 6 7.6995 3.6086 1.6532 13 1 6.9779 4.2905 1.2283 14 6 8.9515 4.0633 2.0091 15 7 9.2672 5.3275 1.8306 16 14 10.1994 2.8839 2.7448 17 1 11.0035 2.2720 1.6566 18 1 11.0971 3.6249 3.6670 19 1 9.4896 1.8173 3.4957 20 6 3.9569 -1.6657 -0.0633 21 6 3.4651 -0.9470 -1.3236 22 7 2.0226 -0.6997 -1.1944 23 6 1.1674 -1.1066 -2.1533 24 8 -0.0303 -0.9795 -1.9931 25 8 1.6404 -1.6543 -3.2886 26 6 0.6617 -2.0703 -4.2773 27 6 -0.1646 -0.8603 -4.7177 28 6 1.3820 -2.6639 -5.4897 29 6 -0.2637 -3.1248 -3.6666 30 1 -0.3634 0.4522 0.9228 31 1 -0.3632 0.5732 -0.8531 32 1 -0.3633 -1.0252 -0.0699 33 1 1.6029 -1.7251 1.2915 34 1 1.7659 -0.1667 2.1368 35 1 3.6376 1.2241 0.7115 36 1 5.4437 2.6656 1.0424 37 1 7.4172 1.9117 2.9166 38 1 8.0187 1.5311 1.2852 39 1 10.1482 5.6473 2.0806 40 1 5.0412 -1.7696 -0.1034 41 1 3.4983 -2.6528 -0.0049 42 1 3.9904 0.0020 -1.4316 43 1 3.6518 -1.5719 -2.1969 44 1 0.4946 -0.1091 -5.1527 45 1 -0.8995 -1.1726 -5.4595 46 1 -0.6777 -0.4370 -3.8542 47 1 1.9709 -3.5259 -5.1763 48 1 0.6473 -2.9765 -6.2316 49 1 2.0410 -1.9123 -5.9246 50 1 -0.7768 -2.7016 -2.8032 51 1 -0.9981 -3.4374 -4.4089 52 1 0.3250 -3.9869 -3.3530 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000787358734.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:35:37 Heat of formation + Delta-G solvation = -100.576034 kcal Electronic energy + Delta-G solvation = -31510.563320 eV Core-core repulsion = 27317.813846 eV Total energy + Delta-G solvation = -4192.749474 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 341.215 amu Computer time = 1.23 seconds Orbital eigenvalues (eV) -41.36029 -39.93447 -38.61112 -36.88843 -34.78661 -34.33782 -33.91224 -32.63233 -32.39860 -30.97733 -27.95084 -27.71608 -27.66727 -27.32272 -24.89031 -23.32672 -22.50279 -21.66336 -20.72744 -20.07201 -19.19679 -18.31811 -17.67304 -16.84958 -16.60222 -16.36530 -15.83396 -15.73715 -15.09518 -14.93066 -14.74892 -14.48486 -14.17192 -14.10234 -13.89939 -13.76513 -13.69943 -13.08873 -12.88478 -12.75988 -12.61899 -12.52150 -12.35824 -12.30548 -12.20695 -12.08959 -12.02308 -11.78448 -11.64334 -11.39266 -11.30176 -11.09267 -10.98719 -10.83546 -10.73795 -10.56329 -9.96428 -9.60187 -9.47561 -9.44879 -8.97775 -8.79899 -8.73476 -8.02730 -6.20495 -4.22369 1.91656 2.64782 3.21159 3.28367 3.35773 3.43457 3.55511 3.78304 4.34486 4.41737 4.45078 4.46465 4.57044 4.60639 4.66685 4.86365 4.92276 4.98981 5.06536 5.15141 5.15852 5.18582 5.23138 5.29605 5.38327 5.43915 5.47212 5.55166 5.55571 5.62661 5.67858 5.71246 5.78447 5.91234 5.95685 5.98025 6.00208 6.02257 6.15788 6.26446 6.44757 6.73695 6.77359 7.11915 7.21003 7.24303 7.40726 7.56132 8.17085 8.28345 8.68823 8.81642 9.20427 9.41039 10.91474 Molecular weight = 341.21amu Principal moments of inertia in cm(-1) A = 0.018358 B = 0.002311 C = 0.002239 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1524.885308 B =12113.361361 C =12505.057335 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C 0.157 3.843 3 H 0.075 0.925 4 C -0.139 4.139 5 C 0.166 3.834 6 H 0.092 0.908 7 N -0.751 5.751 8 C 0.696 3.304 9 O -0.603 6.603 10 N -0.723 5.723 11 C 0.239 3.761 12 C -0.542 4.542 13 H 0.079 0.921 14 C 0.077 3.923 15 N -0.893 5.893 16 Si 0.877 3.123 17 H -0.273 1.273 18 H -0.284 1.284 19 H -0.260 1.260 20 C -0.146 4.146 21 C 0.114 3.886 22 N -0.590 5.590 23 C 0.654 3.346 24 O -0.564 6.564 25 O -0.365 6.365 26 C 0.136 3.864 27 C -0.182 4.182 28 C -0.141 4.141 29 C -0.182 4.182 30 H 0.047 0.953 31 H 0.073 0.927 32 H 0.074 0.926 33 H 0.083 0.917 34 H 0.086 0.914 35 H 0.390 0.610 36 H 0.392 0.608 37 H 0.023 0.977 38 H 0.018 0.982 39 H 0.267 0.733 40 H 0.087 0.913 41 H 0.072 0.928 42 H 0.073 0.927 43 H 0.090 0.910 44 H 0.059 0.941 45 H 0.068 0.932 46 H 0.088 0.912 47 H 0.066 0.934 48 H 0.079 0.921 49 H 0.067 0.933 50 H 0.088 0.912 51 H 0.068 0.932 52 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.145 -15.776 -11.363 28.724 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C 0.056 3.944 3 H 0.093 0.907 4 C -0.177 4.177 5 C 0.060 3.940 6 H 0.110 0.890 7 N -0.409 5.409 8 C 0.395 3.605 9 O -0.482 6.482 10 N -0.375 5.375 11 C 0.116 3.884 12 C -0.580 4.580 13 H 0.097 0.903 14 C -0.127 4.127 15 N -0.531 5.531 16 Si 0.704 3.296 17 H -0.199 1.199 18 H -0.210 1.210 19 H -0.184 1.184 20 C -0.186 4.186 21 C -0.008 4.008 22 N -0.331 5.331 23 C 0.409 3.591 24 O -0.455 6.455 25 O -0.280 6.280 26 C 0.100 3.900 27 C -0.240 4.240 28 C -0.199 4.199 29 C -0.239 4.239 30 H 0.066 0.934 31 H 0.092 0.908 32 H 0.093 0.907 33 H 0.101 0.899 34 H 0.105 0.895 35 H 0.225 0.775 36 H 0.225 0.775 37 H 0.041 0.959 38 H 0.036 0.964 39 H 0.077 0.923 40 H 0.105 0.895 41 H 0.091 0.909 42 H 0.092 0.908 43 H 0.108 0.892 44 H 0.078 0.922 45 H 0.087 0.913 46 H 0.107 0.893 47 H 0.085 0.915 48 H 0.097 0.903 49 H 0.086 0.914 50 H 0.107 0.893 51 H 0.087 0.913 52 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -20.725 -16.457 -10.926 28.631 hybrid contribution 0.376 0.257 -0.061 0.459 sum -20.350 -16.200 -10.987 28.236 Atomic orbital electron populations 1.22247 0.91919 1.04190 1.01077 1.21261 0.96218 0.94635 0.82325 0.90680 1.22343 0.94972 1.02531 0.97895 1.20629 0.91449 0.83206 0.98747 0.88965 1.45290 1.14272 1.11225 1.70064 1.16120 0.81159 0.84117 0.79066 1.90860 1.61703 1.42823 1.52837 1.45410 1.17366 1.07966 1.66758 1.19345 0.77247 0.96972 0.94811 1.21095 1.00522 0.92451 1.43927 0.90339 1.24789 0.97962 0.95175 0.94750 1.69886 1.21622 1.14266 1.47292 0.86807 0.81498 0.81426 0.79888 1.19880 1.20971 1.18441 1.22341 1.02828 0.98890 0.94530 1.21717 0.78763 1.01312 0.99003 1.47084 1.07156 1.59724 1.19149 1.18072 0.84129 0.76853 0.80011 1.90944 1.14178 1.60490 1.79849 1.86322 1.41090 1.73889 1.26700 1.22030 0.87348 0.94593 0.86068 1.22506 1.00472 0.97585 1.03398 1.21863 1.01168 1.01515 0.95313 1.22501 0.99837 0.98323 1.03234 0.93444 0.90792 0.90709 0.89858 0.89534 0.77543 0.77541 0.95950 0.96400 0.92292 0.89466 0.90890 0.90836 0.89169 0.92223 0.91336 0.89337 0.91514 0.90261 0.91441 0.89345 0.91343 0.92308 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.28 7.59 37.16 0.28 -1.00 16 2 C 0.16 1.44 3.20 -67.60 -0.22 1.22 16 3 H 0.08 0.66 6.64 -51.93 -0.34 0.31 16 4 C -0.14 -1.21 5.07 -26.61 -0.13 -1.35 16 5 C 0.17 1.88 2.78 -67.89 -0.19 1.69 16 6 H 0.09 1.22 7.58 -51.93 -0.39 0.82 16 7 N -0.75 -9.82 4.27 -58.64 -0.25 -10.07 16 8 C 0.70 12.93 8.53 -86.92 -0.74 12.18 16 9 O -0.60 -13.54 16.01 5.29 0.08 -13.46 16 10 N -0.72 -14.41 5.55 -66.42 -0.37 -14.78 16 11 C 0.24 5.85 4.50 -5.19 -0.02 5.83 16 12 C -0.54 -14.78 9.83 -34.44 -0.34 -15.11 16 13 H 0.08 2.23 7.84 -52.49 -0.41 1.81 16 14 C 0.08 2.17 5.47 -17.82 -0.10 2.07 16 15 N -0.89 -26.45 13.96 55.43 0.77 -25.68 16 16 Si 0.88 21.41 27.47 -169.99 -4.67 16.74 16 17 H -0.27 -6.57 7.11 56.52 0.40 -6.17 16 18 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 19 H -0.26 -6.32 6.54 56.52 0.37 -5.95 16 20 C -0.15 -1.57 5.77 -26.61 -0.15 -1.72 16 21 C 0.11 1.17 6.17 -3.71 -0.02 1.14 16 22 N -0.59 -6.01 2.97 -170.97 -0.51 -6.52 16 23 C 0.65 7.35 7.64 54.06 0.41 7.76 16 24 O -0.56 -6.73 7.28 -19.28 -0.14 -6.87 16 25 O -0.37 -3.90 8.55 -40.30 -0.34 -4.24 16 26 C 0.14 1.17 1.13 -90.62 -0.10 1.07 16 27 C -0.18 -1.52 8.37 37.16 0.31 -1.21 16 28 C -0.14 -0.92 8.85 37.16 0.33 -0.59 16 29 C -0.18 -1.48 8.37 37.16 0.31 -1.16 16 30 H 0.05 0.38 8.14 -51.93 -0.42 -0.05 16 31 H 0.07 0.79 6.76 -51.93 -0.35 0.44 16 32 H 0.07 0.79 6.73 -51.93 -0.35 0.44 16 33 H 0.08 0.69 8.14 -51.93 -0.42 0.27 16 34 H 0.09 0.70 8.14 -51.93 -0.42 0.28 16 35 H 0.39 4.26 6.88 -40.82 -0.28 3.98 16 36 H 0.39 6.87 8.34 -40.82 -0.34 6.53 16 37 H 0.02 0.58 7.20 -51.93 -0.37 0.21 16 38 H 0.02 0.46 7.57 -51.93 -0.39 0.07 16 39 H 0.27 7.41 8.31 -40.82 -0.34 7.07 16 40 H 0.09 1.12 8.14 -51.93 -0.42 0.69 16 41 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 42 H 0.07 0.80 7.74 -51.93 -0.40 0.40 16 43 H 0.09 0.90 6.96 -51.93 -0.36 0.53 16 44 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 45 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 46 H 0.09 0.91 5.88 -51.93 -0.31 0.60 16 47 H 0.07 0.43 8.14 -51.93 -0.42 0.00 16 48 H 0.08 0.37 8.14 -51.93 -0.42 -0.05 16 49 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 50 H 0.09 0.89 5.88 -51.93 -0.31 0.58 16 51 H 0.07 0.44 8.14 -51.93 -0.42 0.01 16 52 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 LS Contribution 398.10 15.07 6.00 6.00 Total: -1.00 -32.50 398.10 -8.65 -41.15 By element: Atomic # 1 Polarization: 15.76 SS G_CDS: -8.85 Total: 6.91 kcal Atomic # 6 Polarization: 11.19 SS G_CDS: -0.37 Total: 10.81 kcal Atomic # 7 Polarization: -56.70 SS G_CDS: -0.35 Total: -57.05 kcal Atomic # 8 Polarization: -24.17 SS G_CDS: -0.40 Total: -24.57 kcal Atomic # 14 Polarization: 21.41 SS G_CDS: -4.67 Total: 16.74 kcal Total LS contribution 6.00 Total: 6.00 kcal Total: -32.50 -8.65 -41.15 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000787358734.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -59.423 kcal (2) G-P(sol) polarization free energy of solvation -32.504 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.927 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.649 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.153 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.576 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.23 seconds