Wall clock time and date at job start Wed Apr 1 2020 00:35:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08993 * 109.58937 * 2 1 4 4 C 1.53195 * 109.58571 * 120.27923 * 2 1 3 5 5 C 1.53038 * 109.31369 * 174.56746 * 4 2 1 6 6 H 1.08995 * 109.46560 * 58.64086 * 5 4 2 7 7 N 1.46502 * 109.45991 * 178.61463 * 5 4 2 8 8 C 1.34780 * 120.00037 * 204.99854 * 7 5 4 9 9 O 1.21582 * 119.99511 * 359.97438 * 8 7 5 10 10 N 1.34771 * 119.99671 * 180.02562 * 8 7 5 11 11 C 1.46505 * 119.99377 * 180.02562 * 10 8 7 12 12 C 1.50707 * 109.46850 * 179.97438 * 11 10 8 13 13 H 1.08004 * 119.99955 * 0.02562 * 12 11 10 14 14 C 1.37870 * 120.00059 * 179.97438 * 12 11 10 15 15 N 1.31517 * 120.00076 * 0.02562 * 14 12 11 16 16 Si 1.86801 * 120.00329 * 179.97438 * 14 12 11 17 17 H 1.48503 * 109.47150 * 270.00662 * 16 14 12 18 18 H 1.48499 * 109.46914 * 30.00381 * 16 14 12 19 19 H 1.48501 * 109.47452 * 150.00168 * 16 14 12 20 20 C 1.53043 * 109.53672 * 298.63068 * 5 4 2 21 21 C 1.53190 * 109.30838 * 61.36809 * 20 5 4 22 22 N 1.46924 * 108.77715 * 305.35924 * 21 20 5 23 23 C 1.34773 * 120.63318 * 233.58789 * 22 21 20 24 24 O 1.21511 * 119.99879 * 185.82530 * 23 22 21 25 25 O 1.34636 * 120.00120 * 5.82609 * 23 22 21 26 26 C 1.45196 * 116.99996 * 180.02562 * 25 23 22 27 27 C 1.52999 * 109.47297 * 59.99633 * 26 25 23 28 28 C 1.52999 * 109.47169 * 180.02562 * 26 25 23 29 29 C 1.53004 * 109.47225 * 299.99984 * 26 25 23 30 30 H 1.08997 * 109.47485 * 294.11471 * 1 2 3 31 31 H 1.09004 * 109.46672 * 54.11356 * 1 2 3 32 32 H 1.08998 * 109.46797 * 174.11167 * 1 2 3 33 33 H 1.08998 * 109.49944 * 54.61171 * 4 2 1 34 34 H 1.08999 * 109.49641 * 294.51855 * 4 2 1 35 35 H 0.97000 * 119.99901 * 25.00130 * 7 5 4 36 36 H 0.97002 * 120.00839 * 0.02562 * 10 8 7 37 37 H 1.09000 * 109.47649 * 60.00187 * 11 10 8 38 38 H 1.08996 * 109.47110 * 299.99540 * 11 10 8 39 39 H 0.97000 * 120.00135 * 359.97438 * 15 14 12 40 40 H 1.09001 * 109.49622 * 181.31462 * 20 5 4 41 41 H 1.09001 * 109.49736 * 301.41685 * 20 5 4 42 42 H 1.09009 * 109.58439 * 185.57577 * 21 20 5 43 43 H 1.09001 * 109.58905 * 65.15558 * 21 20 5 44 44 H 1.08998 * 109.47075 * 60.00499 * 27 26 25 45 45 H 1.09003 * 109.46783 * 180.02562 * 27 26 25 46 46 H 1.09004 * 109.47228 * 299.99918 * 27 26 25 47 47 H 1.08998 * 109.47482 * 59.99781 * 28 26 25 48 48 H 1.09000 * 109.46901 * 179.97438 * 28 26 25 49 49 H 1.08998 * 109.47209 * 299.99505 * 28 26 25 50 50 H 1.09005 * 109.47389 * 59.99490 * 29 26 25 51 51 H 1.09003 * 109.47529 * 180.02562 * 29 26 25 52 52 H 1.09006 * 109.46655 * 300.00154 * 29 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8954 1.0268 0.0000 4 6 2.0435 -0.7277 1.2464 5 6 3.5678 -0.8433 1.1731 6 1 4.0045 0.1528 1.1021 7 7 4.0654 -1.5094 2.3793 8 6 5.3287 -1.2931 2.7961 9 8 6.0554 -0.5454 2.1708 10 7 5.7865 -1.9064 3.9055 11 6 7.1596 -1.6707 4.3588 12 6 7.4188 -2.4679 5.6112 13 1 6.6389 -3.0884 6.0275 14 6 8.6518 -2.4060 6.2250 15 7 9.6016 -1.6509 5.7178 16 14 8.9730 -3.3936 7.7777 17 1 8.6171 -2.5772 8.9661 18 1 8.1467 -4.6273 7.7594 19 1 10.4103 -3.7613 7.8422 20 6 3.9604 -1.6609 -0.0596 21 6 3.4686 -0.9437 -1.3208 22 7 2.0254 -0.6992 -1.1935 23 6 1.1723 -1.1080 -2.1535 24 8 -0.0034 -0.8082 -2.0892 25 8 1.6229 -1.8487 -3.1836 26 6 0.6481 -2.2531 -4.1807 27 6 0.0189 -1.0097 -4.8125 28 6 1.3407 -3.0816 -5.2646 29 6 -0.4430 -3.0946 -3.5156 30 1 -0.3634 0.4198 0.9379 31 1 -0.3633 0.6024 -0.8326 32 1 -0.3633 -1.0222 -0.1054 33 1 1.6049 -1.7245 1.2923 34 1 1.7637 -0.1653 2.1372 35 1 3.4856 -2.1063 2.8779 36 1 5.2070 -2.5038 4.4037 37 1 7.2958 -0.6099 4.5692 38 1 7.8572 -1.9793 3.5804 39 1 9.4348 -1.1377 4.9117 40 1 5.0449 -1.7625 -0.0985 41 1 3.5036 -2.6489 -0.0014 42 1 3.6577 -1.5686 -2.1937 43 1 3.9921 0.0062 -1.4286 44 1 0.7961 -0.4102 -5.2865 45 1 -0.7132 -1.3134 -5.5608 46 1 -0.4747 -0.4199 -4.0401 47 1 1.7886 -3.9673 -4.8142 48 1 0.6088 -3.3855 -6.0129 49 1 2.1182 -2.4824 -5.7386 50 1 -0.9366 -2.5048 -2.7431 51 1 -1.1746 -3.3986 -4.2642 52 1 0.0053 -3.9804 -3.0654 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000787358735.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:35:49 Heat of formation + Delta-G solvation = -112.598004 kcal Electronic energy + Delta-G solvation = -30969.412256 eV Core-core repulsion = 26776.141471 eV Total energy + Delta-G solvation = -4193.270785 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 341.215 amu Computer time = 1.80 seconds Orbital eigenvalues (eV) -41.33789 -39.77524 -38.70516 -36.88251 -34.92278 -34.45419 -34.07746 -32.66635 -32.48363 -30.88163 -27.77760 -27.69718 -27.66608 -26.51310 -24.54751 -23.40079 -22.78377 -21.66428 -20.74953 -20.20273 -19.53557 -18.20110 -17.78324 -16.91060 -16.79099 -16.44028 -15.89051 -15.69601 -14.94779 -14.88213 -14.81343 -14.23361 -14.18350 -14.09693 -13.84734 -13.76927 -13.63642 -13.14445 -12.89497 -12.70181 -12.65391 -12.47791 -12.30705 -12.22826 -12.12001 -12.07298 -12.03574 -11.84235 -11.72725 -11.38273 -11.33132 -11.09743 -11.00295 -10.79334 -10.76443 -10.59891 -10.18206 -9.64471 -9.52057 -8.95362 -8.86584 -8.78806 -8.64883 -7.90906 -6.51301 -4.24463 1.88045 2.60468 3.21820 3.37586 3.40795 3.51380 3.56488 3.81055 4.38817 4.42646 4.43287 4.43881 4.57577 4.62526 4.64957 4.86876 4.92826 4.96521 5.11659 5.13393 5.20309 5.21667 5.27415 5.27744 5.35486 5.36358 5.44262 5.47881 5.52547 5.55080 5.64213 5.67205 5.71185 5.88068 5.95070 5.95901 5.98176 6.11657 6.12556 6.23933 6.40628 6.78376 6.88865 7.17489 7.26042 7.33702 7.46509 7.86045 8.13226 8.29422 8.63040 8.81186 9.24426 9.49956 10.89026 Molecular weight = 341.21amu Principal moments of inertia in cm(-1) A = 0.024323 B = 0.001928 C = 0.001879 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1150.905305 B =14521.566141 C =14897.780392 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C 0.163 3.837 3 H 0.081 0.919 4 C -0.139 4.139 5 C 0.167 3.833 6 H 0.089 0.911 7 N -0.752 5.752 8 C 0.694 3.306 9 O -0.602 6.602 10 N -0.725 5.725 11 C 0.258 3.742 12 C -0.622 4.622 13 H 0.057 0.943 14 C 0.022 3.978 15 N -0.903 5.903 16 Si 1.079 2.921 17 H -0.286 1.286 18 H -0.288 1.288 19 H -0.282 1.282 20 C -0.146 4.146 21 C 0.115 3.885 22 N -0.593 5.593 23 C 0.654 3.346 24 O -0.564 6.564 25 O -0.365 6.365 26 C 0.136 3.864 27 C -0.182 4.182 28 C -0.141 4.141 29 C -0.182 4.182 30 H 0.049 0.951 31 H 0.081 0.919 32 H 0.066 0.934 33 H 0.073 0.927 34 H 0.086 0.914 35 H 0.391 0.609 36 H 0.388 0.612 37 H 0.014 0.986 38 H 0.014 0.986 39 H 0.273 0.727 40 H 0.086 0.914 41 H 0.067 0.933 42 H 0.094 0.906 43 H 0.075 0.925 44 H 0.058 0.942 45 H 0.068 0.932 46 H 0.088 0.912 47 H 0.066 0.934 48 H 0.079 0.921 49 H 0.066 0.934 50 H 0.088 0.912 51 H 0.068 0.932 52 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.302 -1.047 -19.628 29.728 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C 0.061 3.939 3 H 0.099 0.901 4 C -0.178 4.178 5 C 0.061 3.939 6 H 0.107 0.893 7 N -0.408 5.408 8 C 0.394 3.606 9 O -0.481 6.481 10 N -0.377 5.377 11 C 0.136 3.864 12 C -0.661 4.661 13 H 0.075 0.925 14 C -0.184 4.184 15 N -0.537 5.537 16 Si 0.906 3.094 17 H -0.213 1.213 18 H -0.214 1.214 19 H -0.208 1.208 20 C -0.186 4.186 21 C -0.008 4.008 22 N -0.333 5.333 23 C 0.410 3.590 24 O -0.454 6.454 25 O -0.280 6.280 26 C 0.099 3.901 27 C -0.239 4.239 28 C -0.199 4.199 29 C -0.240 4.240 30 H 0.068 0.932 31 H 0.100 0.900 32 H 0.085 0.915 33 H 0.091 0.909 34 H 0.104 0.896 35 H 0.225 0.775 36 H 0.221 0.779 37 H 0.032 0.968 38 H 0.032 0.968 39 H 0.084 0.916 40 H 0.105 0.895 41 H 0.086 0.914 42 H 0.112 0.888 43 H 0.093 0.907 44 H 0.077 0.923 45 H 0.087 0.913 46 H 0.106 0.894 47 H 0.085 0.915 48 H 0.098 0.902 49 H 0.085 0.915 50 H 0.107 0.893 51 H 0.087 0.913 52 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -20.783 -0.640 -19.093 28.229 hybrid contribution -1.640 -0.328 -0.696 1.812 sum -22.423 -0.969 -19.789 29.922 Atomic orbital electron populations 1.22227 0.91941 1.03985 1.01433 1.21214 0.96121 0.94940 0.81599 0.90114 1.22346 0.95114 1.02163 0.98188 1.20630 0.92463 0.97170 0.83685 0.89299 1.45207 1.13435 1.52389 1.29779 1.16162 0.81459 0.81272 0.81737 1.90860 1.56798 1.41882 1.58568 1.45530 1.17098 1.48743 1.26310 1.19033 0.76436 0.96470 0.94475 1.22092 1.01553 1.31161 1.11257 0.92515 1.25874 0.92009 0.97472 1.03043 1.70724 1.34751 1.25997 1.22252 0.83404 0.76183 0.75349 0.74421 1.21291 1.21417 1.20791 1.22380 1.02820 0.99445 0.93946 1.21747 0.78772 1.01196 0.99056 1.47144 1.07060 1.59497 1.19634 1.18052 0.83851 0.77428 0.79666 1.90931 1.15948 1.60799 1.77768 1.86317 1.42572 1.65537 1.33559 1.22037 0.87407 0.94712 0.85912 1.22504 1.01452 0.97798 1.02175 1.21862 1.01335 0.99872 0.96785 1.22512 0.98570 1.00274 1.02596 0.93233 0.90011 0.91517 0.90851 0.89564 0.77548 0.77911 0.96769 0.96763 0.91635 0.89521 0.91448 0.88788 0.90675 0.92260 0.91308 0.89350 0.91462 0.90236 0.91476 0.89347 0.91306 0.92263 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.29 7.61 37.16 0.28 -1.00 16 2 C 0.16 1.52 3.49 -67.60 -0.24 1.29 16 3 H 0.08 0.72 8.14 -51.93 -0.42 0.29 16 4 C -0.14 -1.29 4.84 -26.61 -0.13 -1.42 16 5 C 0.17 2.02 2.42 -67.89 -0.16 1.85 16 6 H 0.09 1.25 7.58 -51.93 -0.39 0.86 16 7 N -0.75 -10.65 5.08 -58.64 -0.30 -10.95 16 8 C 0.69 13.86 8.53 -86.92 -0.74 13.12 16 9 O -0.60 -14.41 16.01 5.29 0.08 -14.33 16 10 N -0.73 -15.42 5.55 -66.41 -0.37 -15.79 16 11 C 0.26 6.84 4.74 -5.19 -0.02 6.82 16 12 C -0.62 -17.14 9.28 -34.44 -0.32 -17.46 16 13 H 0.06 1.48 7.60 -52.48 -0.40 1.08 16 14 C 0.02 0.62 5.46 -17.82 -0.10 0.52 16 15 N -0.90 -27.35 13.65 55.43 0.76 -26.59 16 16 Si 1.08 24.46 29.90 -169.99 -5.08 19.37 16 17 H -0.29 -6.25 7.11 56.52 0.40 -5.85 16 18 H -0.29 -6.14 7.11 56.52 0.40 -5.74 16 19 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 20 C -0.15 -1.68 5.65 -26.61 -0.15 -1.83 16 21 C 0.12 1.14 6.46 -3.71 -0.02 1.12 16 22 N -0.59 -6.04 2.97 -170.97 -0.51 -6.55 16 23 C 0.65 7.28 7.54 54.05 0.41 7.69 16 24 O -0.56 -6.70 7.46 -19.28 -0.14 -6.84 16 25 O -0.36 -3.81 8.53 -40.31 -0.34 -4.16 16 26 C 0.14 1.14 1.13 -90.62 -0.10 1.04 16 27 C -0.18 -1.45 8.37 37.16 0.31 -1.14 16 28 C -0.14 -0.88 8.85 37.16 0.33 -0.55 16 29 C -0.18 -1.48 8.37 37.16 0.31 -1.17 16 30 H 0.05 0.39 8.14 -51.93 -0.42 -0.03 16 31 H 0.08 0.86 6.58 -51.93 -0.34 0.52 16 32 H 0.07 0.70 6.93 -51.93 -0.36 0.34 16 33 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 34 H 0.09 0.74 8.14 -51.93 -0.42 0.31 16 35 H 0.39 4.49 8.62 -40.82 -0.35 4.14 16 36 H 0.39 7.16 8.34 -40.82 -0.34 6.82 16 37 H 0.01 0.42 8.01 -51.93 -0.42 0.00 16 38 H 0.01 0.42 8.01 -51.93 -0.42 0.00 16 39 H 0.27 8.39 7.22 -40.82 -0.29 8.09 16 40 H 0.09 1.19 8.14 -51.93 -0.42 0.77 16 41 H 0.07 0.76 8.14 -51.93 -0.42 0.33 16 42 H 0.09 0.89 6.92 -51.92 -0.36 0.53 16 43 H 0.07 0.72 8.14 -51.93 -0.42 0.29 16 44 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 45 H 0.07 0.43 8.14 -51.93 -0.42 0.00 16 46 H 0.09 0.88 5.88 -51.93 -0.31 0.57 16 47 H 0.07 0.43 8.14 -51.93 -0.42 0.00 16 48 H 0.08 0.36 8.14 -51.93 -0.42 -0.07 16 49 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 50 H 0.09 0.89 5.88 -51.93 -0.31 0.58 16 51 H 0.07 0.44 8.14 -51.93 -0.42 0.01 16 52 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 LS Contribution 404.75 15.07 6.10 6.10 Total: -1.00 -33.50 404.75 -9.15 -42.65 By element: Atomic # 1 Polarization: 17.21 SS G_CDS: -9.00 Total: 8.21 kcal Atomic # 6 Polarization: 9.21 SS G_CDS: -0.35 Total: 8.87 kcal Atomic # 7 Polarization: -59.46 SS G_CDS: -0.42 Total: -59.88 kcal Atomic # 8 Polarization: -24.92 SS G_CDS: -0.40 Total: -25.32 kcal Atomic # 14 Polarization: 24.46 SS G_CDS: -5.08 Total: 19.37 kcal Total LS contribution 6.10 Total: 6.10 kcal Total: -33.50 -9.15 -42.65 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000787358735.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -69.947 kcal (2) G-P(sol) polarization free energy of solvation -33.504 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -103.450 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.148 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.651 kcal (6) G-S(sol) free energy of system = (1) + (5) -112.598 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.81 seconds