Wall clock time and date at job start Wed Apr 1 2020 00:35:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08993 * 109.58937 * 2 1 4 4 C 1.53195 * 109.58571 * 120.27923 * 2 1 3 5 5 C 1.53038 * 109.31369 * 174.56746 * 4 2 1 6 6 H 1.08995 * 109.46560 * 58.64086 * 5 4 2 7 7 N 1.46502 * 109.45991 * 178.61463 * 5 4 2 8 8 C 1.34780 * 120.00037 * 204.99854 * 7 5 4 9 9 O 1.21582 * 119.99511 * 359.97438 * 8 7 5 10 10 N 1.34771 * 119.99671 * 180.02562 * 8 7 5 11 11 C 1.46505 * 119.99377 * 180.02562 * 10 8 7 12 12 C 1.50707 * 109.46850 * 179.97438 * 11 10 8 13 13 H 1.08004 * 119.99955 * 0.02562 * 12 11 10 14 14 C 1.37870 * 120.00059 * 179.97438 * 12 11 10 15 15 N 1.31517 * 120.00076 * 0.02562 * 14 12 11 16 16 Si 1.86801 * 120.00329 * 179.97438 * 14 12 11 17 17 H 1.48503 * 109.47150 * 270.00662 * 16 14 12 18 18 H 1.48499 * 109.46914 * 30.00381 * 16 14 12 19 19 H 1.48501 * 109.47452 * 150.00168 * 16 14 12 20 20 C 1.53043 * 109.53672 * 298.63068 * 5 4 2 21 21 C 1.53190 * 109.30838 * 61.36809 * 20 5 4 22 22 N 1.46924 * 108.77715 * 305.35924 * 21 20 5 23 23 C 1.34773 * 120.63318 * 233.58789 * 22 21 20 24 24 O 1.21511 * 119.99879 * 185.82530 * 23 22 21 25 25 O 1.34636 * 120.00120 * 5.82609 * 23 22 21 26 26 C 1.45196 * 116.99996 * 180.02562 * 25 23 22 27 27 C 1.52999 * 109.47297 * 59.99633 * 26 25 23 28 28 C 1.52999 * 109.47169 * 180.02562 * 26 25 23 29 29 C 1.53004 * 109.47225 * 299.99984 * 26 25 23 30 30 H 1.08997 * 109.47485 * 294.11471 * 1 2 3 31 31 H 1.09004 * 109.46672 * 54.11356 * 1 2 3 32 32 H 1.08998 * 109.46797 * 174.11167 * 1 2 3 33 33 H 1.08998 * 109.49944 * 54.61171 * 4 2 1 34 34 H 1.08999 * 109.49641 * 294.51855 * 4 2 1 35 35 H 0.97000 * 119.99901 * 25.00130 * 7 5 4 36 36 H 0.97002 * 120.00839 * 0.02562 * 10 8 7 37 37 H 1.09000 * 109.47649 * 60.00187 * 11 10 8 38 38 H 1.08996 * 109.47110 * 299.99540 * 11 10 8 39 39 H 0.97000 * 120.00135 * 359.97438 * 15 14 12 40 40 H 1.09001 * 109.49622 * 181.31462 * 20 5 4 41 41 H 1.09001 * 109.49736 * 301.41685 * 20 5 4 42 42 H 1.09009 * 109.58439 * 185.57577 * 21 20 5 43 43 H 1.09001 * 109.58905 * 65.15558 * 21 20 5 44 44 H 1.08998 * 109.47075 * 60.00499 * 27 26 25 45 45 H 1.09003 * 109.46783 * 180.02562 * 27 26 25 46 46 H 1.09004 * 109.47228 * 299.99918 * 27 26 25 47 47 H 1.08998 * 109.47482 * 59.99781 * 28 26 25 48 48 H 1.09000 * 109.46901 * 179.97438 * 28 26 25 49 49 H 1.08998 * 109.47209 * 299.99505 * 28 26 25 50 50 H 1.09005 * 109.47389 * 59.99490 * 29 26 25 51 51 H 1.09003 * 109.47529 * 180.02562 * 29 26 25 52 52 H 1.09006 * 109.46655 * 300.00154 * 29 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8954 1.0268 0.0000 4 6 2.0435 -0.7277 1.2464 5 6 3.5678 -0.8433 1.1731 6 1 4.0045 0.1528 1.1021 7 7 4.0654 -1.5094 2.3793 8 6 5.3287 -1.2931 2.7961 9 8 6.0554 -0.5454 2.1708 10 7 5.7865 -1.9064 3.9055 11 6 7.1596 -1.6707 4.3588 12 6 7.4188 -2.4679 5.6112 13 1 6.6389 -3.0884 6.0275 14 6 8.6518 -2.4060 6.2250 15 7 9.6016 -1.6509 5.7178 16 14 8.9730 -3.3936 7.7777 17 1 8.6171 -2.5772 8.9661 18 1 8.1467 -4.6273 7.7594 19 1 10.4103 -3.7613 7.8422 20 6 3.9604 -1.6609 -0.0596 21 6 3.4686 -0.9437 -1.3208 22 7 2.0254 -0.6992 -1.1935 23 6 1.1723 -1.1080 -2.1535 24 8 -0.0034 -0.8082 -2.0892 25 8 1.6229 -1.8487 -3.1836 26 6 0.6481 -2.2531 -4.1807 27 6 0.0189 -1.0097 -4.8125 28 6 1.3407 -3.0816 -5.2646 29 6 -0.4430 -3.0946 -3.5156 30 1 -0.3634 0.4198 0.9379 31 1 -0.3633 0.6024 -0.8326 32 1 -0.3633 -1.0222 -0.1054 33 1 1.6049 -1.7245 1.2923 34 1 1.7637 -0.1653 2.1372 35 1 3.4856 -2.1063 2.8779 36 1 5.2070 -2.5038 4.4037 37 1 7.2958 -0.6099 4.5692 38 1 7.8572 -1.9793 3.5804 39 1 9.4348 -1.1377 4.9117 40 1 5.0449 -1.7625 -0.0985 41 1 3.5036 -2.6489 -0.0014 42 1 3.6577 -1.5686 -2.1937 43 1 3.9921 0.0062 -1.4286 44 1 0.7961 -0.4102 -5.2865 45 1 -0.7132 -1.3134 -5.5608 46 1 -0.4747 -0.4199 -4.0401 47 1 1.7886 -3.9673 -4.8142 48 1 0.6088 -3.3855 -6.0129 49 1 2.1182 -2.4824 -5.7386 50 1 -0.9366 -2.5048 -2.7431 51 1 -1.1746 -3.3986 -4.2642 52 1 0.0053 -3.9804 -3.0654 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000787358735.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:35:45 Heat of formation + Delta-G solvation = -135.708816 kcal Electronic energy + Delta-G solvation = -30970.414416 eV Core-core repulsion = 26776.141471 eV Total energy + Delta-G solvation = -4194.272945 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 341.215 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -42.16089 -41.12835 -39.76040 -37.82167 -36.47080 -35.76792 -35.09518 -34.44668 -33.46191 -32.08902 -28.91165 -28.32730 -28.30523 -28.12595 -25.63239 -24.69724 -24.19502 -22.76737 -21.73650 -21.58385 -20.37419 -19.87354 -18.74812 -18.48711 -17.66715 -17.35958 -17.25045 -16.49206 -16.45492 -15.89371 -15.68854 -15.61273 -15.50371 -15.22666 -14.99325 -14.88065 -14.60525 -14.46577 -14.31209 -14.06918 -13.59856 -13.51203 -13.20309 -13.08699 -13.08260 -12.99688 -12.90118 -12.74626 -12.69099 -12.55642 -12.43701 -12.12582 -12.07212 -12.01826 -11.88642 -11.74182 -11.35864 -11.30806 -10.91124 -10.75845 -10.36531 -10.31360 -9.79273 -9.69719 -8.78323 -6.53357 1.12530 1.56364 1.66028 1.71059 1.82481 1.85640 2.17123 2.56230 2.75753 3.09762 3.39538 3.56159 3.72677 3.78555 3.83292 3.86666 3.97932 3.99152 4.17188 4.23940 4.30834 4.47070 4.53784 4.63296 4.64434 4.67542 4.76862 4.77265 4.79297 4.84400 4.85974 4.90299 4.90614 5.00070 5.00659 5.07211 5.12593 5.20701 5.30602 5.31488 5.37018 5.47181 5.50205 5.51834 5.54954 5.61422 6.06682 6.17147 6.34891 6.38460 7.17757 7.31149 7.33113 7.64850 8.61242 Molecular weight = 341.21amu Principal moments of inertia in cm(-1) A = 0.024323 B = 0.001928 C = 0.001879 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1150.905305 B =14521.566141 C =14897.780392 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C 0.161 3.839 3 H 0.087 0.913 4 C -0.125 4.125 5 C 0.164 3.836 6 H 0.070 0.930 7 N -0.727 5.727 8 C 0.693 3.307 9 O -0.644 6.644 10 N -0.721 5.721 11 C 0.273 3.727 12 C -0.628 4.628 13 H 0.075 0.925 14 C -0.034 4.034 15 N -0.930 5.930 16 Si 1.133 2.867 17 H -0.271 1.271 18 H -0.261 1.261 19 H -0.285 1.285 20 C -0.138 4.138 21 C 0.123 3.877 22 N -0.593 5.593 23 C 0.650 3.350 24 O -0.574 6.574 25 O -0.373 6.373 26 C 0.125 3.875 27 C -0.177 4.177 28 C -0.137 4.137 29 C -0.177 4.177 30 H 0.067 0.933 31 H 0.067 0.933 32 H 0.053 0.947 33 H 0.082 0.918 34 H 0.101 0.899 35 H 0.410 0.590 36 H 0.405 0.595 37 H -0.018 1.018 38 H -0.019 1.019 39 H 0.254 0.746 40 H 0.060 0.940 41 H 0.074 0.926 42 H 0.100 0.900 43 H 0.078 0.922 44 H 0.058 0.942 45 H 0.088 0.912 46 H 0.066 0.934 47 H 0.065 0.935 48 H 0.101 0.899 49 H 0.066 0.934 50 H 0.067 0.933 51 H 0.088 0.912 52 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.447 -2.521 -19.370 31.293 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C 0.060 3.940 3 H 0.105 0.895 4 C -0.164 4.164 5 C 0.059 3.941 6 H 0.088 0.912 7 N -0.383 5.383 8 C 0.393 3.607 9 O -0.527 6.527 10 N -0.375 5.375 11 C 0.149 3.851 12 C -0.666 4.666 13 H 0.093 0.907 14 C -0.232 4.232 15 N -0.566 5.566 16 Si 0.952 3.048 17 H -0.196 1.196 18 H -0.185 1.185 19 H -0.211 1.211 20 C -0.178 4.178 21 C 0.000 4.000 22 N -0.334 5.334 23 C 0.405 3.595 24 O -0.465 6.465 25 O -0.288 6.288 26 C 0.089 3.911 27 C -0.234 4.234 28 C -0.194 4.194 29 C -0.234 4.234 30 H 0.086 0.914 31 H 0.086 0.914 32 H 0.072 0.928 33 H 0.101 0.899 34 H 0.119 0.881 35 H 0.246 0.754 36 H 0.240 0.760 37 H -0.001 1.001 38 H -0.001 1.001 39 H 0.064 0.936 40 H 0.079 0.921 41 H 0.092 0.908 42 H 0.118 0.882 43 H 0.096 0.904 44 H 0.077 0.923 45 H 0.107 0.893 46 H 0.085 0.915 47 H 0.084 0.916 48 H 0.119 0.881 49 H 0.086 0.914 50 H 0.086 0.914 51 H 0.106 0.894 52 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -23.029 -2.136 -18.862 29.844 hybrid contribution -1.057 0.162 -0.894 1.394 sum -24.086 -1.975 -19.756 31.215 Atomic orbital electron populations 1.22070 0.91557 1.02990 1.01789 1.21310 0.96276 0.95236 0.81227 0.89472 1.22247 0.92286 1.03020 0.98800 1.20808 0.94385 0.96060 0.82870 0.91200 1.44993 1.11333 1.51874 1.30088 1.16294 0.82793 0.80582 0.81010 1.90834 1.58539 1.43659 1.59664 1.45150 1.15539 1.49615 1.27197 1.18515 0.78613 0.94339 0.93612 1.22444 1.02110 1.30880 1.11146 0.90658 1.27638 0.91994 0.97565 1.06005 1.70872 1.35883 1.27588 1.22228 0.82752 0.76316 0.74996 0.70726 1.19629 1.18532 1.21098 1.22255 1.01192 0.99890 0.94428 1.21659 0.78762 1.01274 0.98349 1.47202 1.06929 1.59431 1.19830 1.18186 0.83824 0.77515 0.79930 1.90940 1.16337 1.61127 1.78055 1.86321 1.43474 1.65333 1.33717 1.22356 0.87564 0.95167 0.86004 1.22445 1.01673 0.97396 1.01884 1.21883 1.01798 0.99337 0.96421 1.22453 0.98757 0.99672 1.02536 0.91443 0.91391 0.92757 0.89906 0.88083 0.75398 0.75972 1.00062 1.00078 0.93628 0.92101 0.90776 0.88197 0.90395 0.92335 0.89345 0.91511 0.91601 0.88083 0.91448 0.91439 0.89361 0.92481 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.17 7.61 71.98 0.55 -1.62 16 2 C 0.16 2.77 3.49 44.97 0.16 2.92 16 3 H 0.09 1.42 8.14 -2.39 -0.02 1.40 16 4 C -0.12 -2.04 4.84 30.67 0.15 -1.89 16 5 C 0.16 3.82 2.42 45.02 0.11 3.93 16 6 H 0.07 1.96 7.58 -2.39 -0.02 1.94 16 7 N -0.73 -19.74 5.08 -457.69 -2.33 -22.06 16 8 C 0.69 27.85 8.53 179.05 1.53 29.38 16 9 O -0.64 -31.89 16.01 -3.97 -0.06 -31.95 16 10 N -0.72 -30.72 5.55 -482.29 -2.68 -33.40 16 11 C 0.27 14.96 4.74 85.63 0.41 15.36 16 12 C -0.63 -34.51 9.28 25.60 0.24 -34.27 16 13 H 0.08 3.79 7.60 -2.91 -0.02 3.77 16 14 C -0.03 -1.89 5.46 84.65 0.46 -1.43 16 15 N -0.93 -57.69 13.65 21.45 0.29 -57.40 16 16 Si 1.13 47.95 29.90 68.60 2.05 50.00 16 17 H -0.27 -10.76 7.11 99.48 0.71 -10.05 16 18 H -0.26 -9.85 7.11 99.48 0.71 -9.15 16 19 H -0.29 -12.16 7.11 99.48 0.71 -11.45 16 20 C -0.14 -3.10 5.65 30.67 0.17 -2.93 16 21 C 0.12 2.36 6.46 86.36 0.56 2.91 16 22 N -0.59 -11.54 2.97 -925.24 -2.75 -14.29 16 23 C 0.65 14.02 7.54 129.79 0.98 15.00 16 24 O -0.57 -13.40 7.46 19.81 0.15 -13.26 16 25 O -0.37 -7.51 8.53 -55.46 -0.47 -7.98 16 26 C 0.13 1.94 1.13 -10.79 -0.01 1.93 16 27 C -0.18 -2.62 8.37 71.98 0.60 -2.02 16 28 C -0.14 -1.46 8.85 71.98 0.64 -0.82 16 29 C -0.18 -2.66 8.37 71.98 0.60 -2.05 16 30 H 0.07 0.90 8.14 -2.39 -0.02 0.89 16 31 H 0.07 1.38 6.58 -2.38 -0.02 1.36 16 32 H 0.05 1.08 6.93 -2.39 -0.02 1.06 16 33 H 0.08 1.26 8.14 -2.39 -0.02 1.24 16 34 H 0.10 1.42 8.14 -2.39 -0.02 1.40 16 35 H 0.41 8.40 8.62 -92.71 -0.80 7.60 16 36 H 0.40 14.37 8.34 -92.71 -0.77 13.59 16 37 H -0.02 -1.12 8.01 -2.39 -0.02 -1.14 16 38 H -0.02 -1.13 8.01 -2.39 -0.02 -1.15 16 39 H 0.25 16.40 7.22 -92.71 -0.67 15.73 16 40 H 0.06 1.71 8.14 -2.39 -0.02 1.69 16 41 H 0.07 1.57 8.14 -2.39 -0.02 1.55 16 42 H 0.10 1.83 6.92 -2.38 -0.02 1.81 16 43 H 0.08 1.47 8.14 -2.39 -0.02 1.45 16 44 H 0.06 0.86 8.14 -2.39 -0.02 0.84 16 45 H 0.09 0.93 8.14 -2.39 -0.02 0.91 16 46 H 0.07 1.30 5.88 -2.39 -0.01 1.29 16 47 H 0.06 0.72 8.14 -2.39 -0.02 0.70 16 48 H 0.10 0.63 8.14 -2.39 -0.02 0.61 16 49 H 0.07 0.72 8.14 -2.39 -0.02 0.70 16 50 H 0.07 1.32 5.88 -2.38 -0.01 1.31 16 51 H 0.09 0.94 8.14 -2.39 -0.02 0.92 16 52 H 0.06 0.86 8.14 -2.38 -0.02 0.84 16 Total: -1.00 -75.07 404.75 0.79 -74.28 By element: Atomic # 1 Polarization: 32.21 SS G_CDS: -0.55 Total: 31.66 kcal Atomic # 6 Polarization: 17.27 SS G_CDS: 7.13 Total: 24.41 kcal Atomic # 7 Polarization: -119.69 SS G_CDS: -7.46 Total: -127.15 kcal Atomic # 8 Polarization: -52.80 SS G_CDS: -0.39 Total: -53.19 kcal Atomic # 14 Polarization: 47.95 SS G_CDS: 2.05 Total: 50.00 kcal Total: -75.07 0.79 -74.28 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000787358735.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -61.432 kcal (2) G-P(sol) polarization free energy of solvation -75.066 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -136.497 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.788 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.277 kcal (6) G-S(sol) free energy of system = (1) + (5) -135.709 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds