Wall clock time and date at job start Wed Apr 1 2020 00:36:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09010 * 109.69781 * 2 1 4 4 C 1.53195 * 109.58802 * 239.64544 * 2 1 3 5 5 C 1.53036 * 109.31105 * 185.57632 * 4 2 1 6 6 H 1.09002 * 109.46235 * 301.35501 * 5 4 2 7 7 N 1.46499 * 109.45919 * 181.38184 * 5 4 2 8 8 C 1.34779 * 119.99946 * 155.24710 * 7 5 4 9 9 O 1.21591 * 119.99871 * 359.72377 * 8 7 5 10 10 N 1.34775 * 120.00002 * 179.72848 * 8 7 5 11 11 C 1.46499 * 120.00208 * 179.97438 * 10 8 7 12 12 C 1.50694 * 109.47390 * 179.97438 * 11 10 8 13 13 H 1.07997 * 120.00161 * 0.02562 * 12 11 10 14 14 C 1.37877 * 120.00225 * 179.97438 * 12 11 10 15 15 N 1.31514 * 119.99998 * 180.02562 * 14 12 11 16 16 Si 1.86799 * 120.00063 * 0.02562 * 14 12 11 17 17 H 1.48503 * 109.47229 * 89.99248 * 16 14 12 18 18 H 1.48496 * 109.47328 * 209.99938 * 16 14 12 19 19 H 1.48504 * 109.46879 * 329.99885 * 16 14 12 20 20 C 1.53046 * 109.53008 * 61.36747 * 5 4 2 21 21 C 1.53187 * 109.31396 * 298.61482 * 20 5 4 22 22 N 1.46928 * 109.58606 * 120.35100 * 2 1 3 23 23 C 1.34770 * 120.63295 * 353.37647 * 22 2 1 24 24 O 1.21513 * 119.99905 * 5.08355 * 23 22 2 25 25 O 1.34640 * 119.99965 * 185.08545 * 23 22 2 26 26 C 1.45200 * 116.99810 * 179.97438 * 25 23 22 27 27 C 1.52998 * 109.47256 * 60.00091 * 26 25 23 28 28 C 1.52997 * 109.47105 * 180.02562 * 26 25 23 29 29 C 1.53001 * 109.47390 * 300.00123 * 26 25 23 30 30 H 1.09003 * 109.46651 * 183.92830 * 1 2 3 31 31 H 1.08996 * 109.46810 * 303.92372 * 1 2 3 32 32 H 1.09001 * 109.46940 * 63.93010 * 1 2 3 33 33 H 1.08995 * 109.49675 * 65.62279 * 4 2 1 34 34 H 1.08995 * 109.51927 * 305.53804 * 4 2 1 35 35 H 0.97000 * 119.99888 * 334.97598 * 7 5 4 36 36 H 0.96999 * 119.99815 * 359.97438 * 10 8 7 37 37 H 1.09003 * 109.47465 * 300.00224 * 11 10 8 38 38 H 1.09002 * 109.47043 * 59.99524 * 11 10 8 39 39 H 0.97011 * 119.99668 * 180.02562 * 15 14 12 40 40 H 1.09001 * 109.49425 * 58.57807 * 20 5 4 41 41 H 1.09000 * 109.49956 * 178.67214 * 20 5 4 42 42 H 1.09004 * 109.59878 * 294.86862 * 21 20 5 43 43 H 1.09002 * 109.58880 * 174.43094 * 21 20 5 44 44 H 1.09005 * 109.46892 * 59.99576 * 27 26 25 45 45 H 1.09001 * 109.47413 * 179.97438 * 27 26 25 46 46 H 1.09002 * 109.46967 * 300.00288 * 27 26 25 47 47 H 1.09002 * 109.47331 * 59.99652 * 28 26 25 48 48 H 1.09001 * 109.47420 * 180.02562 * 28 26 25 49 49 H 1.09010 * 109.47014 * 299.99972 * 28 26 25 50 50 H 1.09002 * 109.46856 * 59.99697 * 29 26 25 51 51 H 1.08996 * 109.47278 * 179.97438 * 29 26 25 52 52 H 1.09002 * 109.46887 * 300.00250 * 29 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8975 1.0263 0.0000 4 6 2.0437 -0.7294 -1.2454 5 6 3.5676 -0.8479 -1.1701 6 1 4.0062 0.1475 -1.0991 7 7 4.0653 -1.5157 -2.3753 8 6 5.3311 -1.3060 -2.7879 9 8 6.0584 -0.5586 -2.1626 10 7 5.7907 -1.9246 -3.8935 11 6 7.1665 -1.6962 -4.3424 12 6 7.4276 -2.4993 -5.5905 13 1 6.6468 -3.1176 -6.0079 14 6 8.6630 -2.4438 -6.2001 15 7 8.8907 -3.1443 -7.2896 16 14 10.0134 -1.3738 -5.4785 17 1 10.8058 -2.1665 -4.5043 18 1 10.9024 -0.8968 -6.5681 19 1 9.4055 -0.2073 -4.7893 20 6 3.9568 -1.6657 0.0636 21 6 3.4652 -0.9468 1.3238 22 7 2.0226 -0.6995 1.1945 23 6 1.1676 -1.1061 2.1536 24 8 -0.0302 -0.9784 1.9936 25 8 1.6405 -1.6536 3.2891 26 6 0.6619 -2.0681 4.2785 27 6 -0.2648 -3.1219 3.6689 28 6 1.3822 -2.6617 5.4907 29 6 -0.1629 -0.8569 4.7186 30 1 -0.3633 -1.0253 0.0704 31 1 -0.3633 0.5735 0.8527 32 1 -0.3633 0.4516 -0.9231 33 1 1.7661 -0.1668 -2.1368 34 1 1.6032 -1.7253 -1.2918 35 1 3.4851 -2.1119 -2.8741 36 1 5.2106 -2.5211 -4.3921 37 1 7.3080 -0.6366 -4.5554 38 1 7.8599 -2.0052 -3.5602 39 1 9.7601 -3.1056 -7.7183 40 1 3.4980 -2.6528 0.0052 41 1 5.0410 -1.7698 0.1039 42 1 3.9904 0.0023 1.4317 43 1 3.6519 -1.5715 2.1973 44 1 0.3228 -3.9847 3.3553 45 1 -0.9992 -3.4334 4.4117 46 1 -0.7779 -2.6986 2.8053 47 1 2.0422 -1.9107 5.9249 48 1 0.6476 -2.9733 6.2333 49 1 1.9701 -3.5246 5.1775 50 1 -0.6760 -0.4336 3.8551 51 1 -0.8978 -1.1682 5.4609 52 1 0.4973 -0.1062 5.1529 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000787358736.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:36:03 Heat of formation + Delta-G solvation = -103.741022 kcal Electronic energy + Delta-G solvation = -30984.561407 eV Core-core repulsion = 26791.674690 eV Total energy + Delta-G solvation = -4192.886718 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 341.215 amu Computer time = 1.76 seconds Orbital eigenvalues (eV) -41.34542 -39.79242 -38.72541 -36.88580 -34.91130 -34.39930 -34.03762 -32.65388 -32.39183 -31.00497 -28.00466 -27.74877 -27.69714 -27.27290 -24.60444 -23.39538 -22.45105 -21.47108 -20.76424 -20.22122 -19.55274 -18.25613 -17.72958 -16.86599 -16.52641 -16.29486 -16.13626 -15.76552 -14.96295 -14.94177 -14.80844 -14.55065 -14.15823 -14.10003 -13.95696 -13.80011 -13.63520 -13.10807 -12.93071 -12.70119 -12.64854 -12.49631 -12.36642 -12.31405 -12.21790 -12.12412 -12.04297 -11.86471 -11.72813 -11.39144 -11.33350 -11.12208 -10.98856 -10.80047 -10.72370 -10.59232 -9.96498 -9.64846 -9.50557 -9.45326 -8.94792 -8.88053 -8.75165 -8.02640 -6.20522 -4.22417 1.87657 2.60196 3.18950 3.28259 3.35509 3.43433 3.51518 3.77722 4.34471 4.38570 4.42915 4.43338 4.57331 4.61730 4.64216 4.84908 4.92028 4.96251 5.11561 5.13025 5.15031 5.20125 5.21492 5.26493 5.35226 5.36263 5.44016 5.48211 5.52446 5.55522 5.63973 5.66855 5.71757 5.88516 5.94643 5.95488 5.98284 6.11554 6.12959 6.23143 6.41664 6.74243 6.76958 7.11848 7.17001 7.24331 7.40886 7.57297 8.12960 8.28574 8.69146 8.81833 9.20358 9.40966 10.91410 Molecular weight = 341.21amu Principal moments of inertia in cm(-1) A = 0.024051 B = 0.002008 C = 0.001947 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1163.918922 B =13939.117195 C =14377.835300 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C 0.163 3.837 3 H 0.080 0.920 4 C -0.139 4.139 5 C 0.167 3.833 6 H 0.089 0.911 7 N -0.751 5.751 8 C 0.695 3.305 9 O -0.603 6.603 10 N -0.723 5.723 11 C 0.239 3.761 12 C -0.542 4.542 13 H 0.079 0.921 14 C 0.077 3.923 15 N -0.893 5.893 16 Si 0.878 3.122 17 H -0.273 1.273 18 H -0.284 1.284 19 H -0.260 1.260 20 C -0.146 4.146 21 C 0.116 3.884 22 N -0.593 5.593 23 C 0.654 3.346 24 O -0.564 6.564 25 O -0.365 6.365 26 C 0.136 3.864 27 C -0.182 4.182 28 C -0.141 4.141 29 C -0.182 4.182 30 H 0.074 0.926 31 H 0.073 0.927 32 H 0.047 0.953 33 H 0.086 0.914 34 H 0.074 0.926 35 H 0.393 0.607 36 H 0.392 0.608 37 H 0.023 0.977 38 H 0.018 0.982 39 H 0.267 0.733 40 H 0.067 0.933 41 H 0.087 0.913 42 H 0.074 0.926 43 H 0.093 0.907 44 H 0.059 0.941 45 H 0.068 0.932 46 H 0.088 0.912 47 H 0.066 0.934 48 H 0.079 0.921 49 H 0.066 0.934 50 H 0.088 0.912 51 H 0.068 0.932 52 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.350 2.986 23.463 31.202 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C 0.061 3.939 3 H 0.098 0.902 4 C -0.178 4.178 5 C 0.060 3.940 6 H 0.107 0.893 7 N -0.407 5.407 8 C 0.395 3.605 9 O -0.483 6.483 10 N -0.375 5.375 11 C 0.116 3.884 12 C -0.580 4.580 13 H 0.097 0.903 14 C -0.127 4.127 15 N -0.530 5.530 16 Si 0.704 3.296 17 H -0.199 1.199 18 H -0.210 1.210 19 H -0.184 1.184 20 C -0.186 4.186 21 C -0.007 4.007 22 N -0.333 5.333 23 C 0.410 3.590 24 O -0.454 6.454 25 O -0.280 6.280 26 C 0.100 3.900 27 C -0.240 4.240 28 C -0.199 4.199 29 C -0.239 4.239 30 H 0.093 0.907 31 H 0.092 0.908 32 H 0.066 0.934 33 H 0.105 0.895 34 H 0.093 0.907 35 H 0.226 0.774 36 H 0.225 0.775 37 H 0.041 0.959 38 H 0.036 0.964 39 H 0.077 0.923 40 H 0.086 0.914 41 H 0.105 0.895 42 H 0.092 0.908 43 H 0.111 0.889 44 H 0.078 0.922 45 H 0.087 0.913 46 H 0.107 0.893 47 H 0.085 0.915 48 H 0.098 0.902 49 H 0.085 0.915 50 H 0.107 0.893 51 H 0.087 0.913 52 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -19.863 3.645 23.882 31.276 hybrid contribution 0.354 -0.239 -0.248 0.494 sum -19.509 3.406 23.633 30.834 Atomic orbital electron populations 1.22247 0.91857 1.04250 1.01068 1.21242 0.96204 0.94775 0.81667 0.90204 1.22339 0.95041 1.02247 0.98170 1.20635 0.92544 0.97114 0.83658 0.89280 1.45191 1.13185 1.52432 1.29905 1.16128 0.81500 0.81210 0.81652 1.90858 1.56905 1.42003 1.58533 1.45411 1.16583 1.48801 1.26698 1.19348 0.77344 0.96932 0.94777 1.21097 0.99912 1.28295 1.08741 0.90325 1.24791 0.98279 0.95129 0.94498 1.69887 1.23641 1.40555 1.18966 0.86804 0.81957 0.81749 0.79094 1.19866 1.20953 1.18439 1.22385 1.02815 0.99469 0.93936 1.21737 0.78833 1.01163 0.99002 1.47135 1.07170 1.59794 1.19243 1.18070 0.84135 0.76818 0.80016 1.90948 1.14174 1.60425 1.79847 1.86317 1.41126 1.73913 1.26676 1.22033 0.87356 0.94614 0.86045 1.22507 0.99845 0.98362 1.03248 1.21864 1.01171 1.01521 0.95299 1.22508 1.00468 0.97558 1.03398 0.90691 0.90768 0.93393 0.89540 0.90744 0.77390 0.77480 0.95932 0.96397 0.92288 0.91414 0.89475 0.90758 0.88850 0.92237 0.91310 0.89332 0.91494 0.90240 0.91460 0.89345 0.91310 0.92288 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.25 7.59 37.16 0.28 -0.96 16 2 C 0.16 1.47 3.49 -67.59 -0.24 1.23 16 3 H 0.08 0.67 8.14 -51.92 -0.42 0.25 16 4 C -0.14 -1.24 4.84 -26.61 -0.13 -1.36 16 5 C 0.17 1.92 2.41 -67.89 -0.16 1.76 16 6 H 0.09 1.19 7.58 -51.93 -0.39 0.80 16 7 N -0.75 -10.15 5.08 -58.63 -0.30 -10.44 16 8 C 0.70 13.19 8.53 -86.92 -0.74 12.45 16 9 O -0.60 -13.70 16.01 5.29 0.08 -13.61 16 10 N -0.72 -14.63 5.55 -66.42 -0.37 -15.00 16 11 C 0.24 5.89 4.50 -5.20 -0.02 5.87 16 12 C -0.54 -14.88 9.83 -34.44 -0.34 -15.22 16 13 H 0.08 2.24 7.84 -52.49 -0.41 1.83 16 14 C 0.08 2.17 5.47 -17.82 -0.10 2.07 16 15 N -0.89 -26.50 13.96 55.43 0.77 -25.73 16 16 Si 0.88 21.46 27.47 -169.99 -4.67 16.79 16 17 H -0.27 -6.58 7.11 56.52 0.40 -6.18 16 18 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 19 H -0.26 -6.33 6.54 56.52 0.37 -5.96 16 20 C -0.15 -1.60 5.65 -26.61 -0.15 -1.75 16 21 C 0.12 1.10 6.43 -3.71 -0.02 1.07 16 22 N -0.59 -5.85 2.97 -170.95 -0.51 -6.36 16 23 C 0.65 7.11 7.64 54.05 0.41 7.52 16 24 O -0.56 -6.57 7.28 -19.28 -0.14 -6.71 16 25 O -0.37 -3.73 8.55 -40.33 -0.34 -4.07 16 26 C 0.14 1.11 1.13 -90.62 -0.10 1.01 16 27 C -0.18 -1.46 8.37 37.16 0.31 -1.15 16 28 C -0.14 -0.85 8.85 37.16 0.33 -0.52 16 29 C -0.18 -1.41 8.37 37.16 0.31 -1.10 16 30 H 0.07 0.79 6.74 -51.93 -0.35 0.44 16 31 H 0.07 0.76 6.76 -51.93 -0.35 0.41 16 32 H 0.05 0.37 8.14 -51.93 -0.42 -0.05 16 33 H 0.09 0.71 8.14 -51.93 -0.42 0.29 16 34 H 0.07 0.66 8.14 -51.93 -0.42 0.23 16 35 H 0.39 4.30 8.62 -40.82 -0.35 3.95 16 36 H 0.39 6.97 8.34 -40.82 -0.34 6.63 16 37 H 0.02 0.59 7.20 -51.93 -0.37 0.22 16 38 H 0.02 0.46 7.57 -51.93 -0.39 0.07 16 39 H 0.27 7.42 8.31 -40.82 -0.34 7.08 16 40 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 41 H 0.09 1.14 8.14 -51.93 -0.42 0.71 16 42 H 0.07 0.68 8.14 -51.93 -0.42 0.25 16 43 H 0.09 0.85 6.96 -51.93 -0.36 0.49 16 44 H 0.06 0.48 8.14 -51.93 -0.42 0.05 16 45 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 46 H 0.09 0.88 5.88 -51.93 -0.31 0.58 16 47 H 0.07 0.40 8.14 -51.93 -0.42 -0.03 16 48 H 0.08 0.34 8.14 -51.93 -0.42 -0.08 16 49 H 0.07 0.41 8.14 -51.92 -0.42 -0.01 16 50 H 0.09 0.86 5.88 -51.93 -0.31 0.55 16 51 H 0.07 0.42 8.14 -51.93 -0.42 -0.01 16 52 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 LS Contribution 402.39 15.07 6.06 6.06 Total: -1.00 -32.90 402.39 -8.79 -41.69 By element: Atomic # 1 Polarization: 15.48 SS G_CDS: -9.02 Total: 6.46 kcal Atomic # 6 Polarization: 11.27 SS G_CDS: -0.36 Total: 10.91 kcal Atomic # 7 Polarization: -57.13 SS G_CDS: -0.40 Total: -57.53 kcal Atomic # 8 Polarization: -23.99 SS G_CDS: -0.40 Total: -24.39 kcal Atomic # 14 Polarization: 21.46 SS G_CDS: -4.67 Total: 16.79 kcal Total LS contribution 6.06 Total: 6.06 kcal Total: -32.90 -8.79 -41.69 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000787358736.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -62.048 kcal (2) G-P(sol) polarization free energy of solvation -32.904 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.952 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.789 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.693 kcal (6) G-S(sol) free energy of system = (1) + (5) -103.741 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.76 seconds