Wall clock time and date at job start Wed Apr 1 2020 00:34:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08998 * 109.58577 * 2 1 4 4 C 1.53198 * 109.58368 * 239.72052 * 2 1 3 5 5 C 1.53041 * 109.31289 * 185.43523 * 4 2 1 6 6 H 1.08995 * 109.45830 * 181.38007 * 5 4 2 7 7 N 1.46496 * 109.46109 * 301.34282 * 5 4 2 8 8 C 1.34773 * 120.00118 * 204.99784 * 7 5 4 9 9 O 1.21509 * 119.99919 * 0.02562 * 8 7 5 10 10 O 1.34643 * 120.00061 * 179.97438 * 8 7 5 11 11 C 1.45200 * 116.99978 * 180.02562 * 10 8 7 12 12 C 1.53002 * 109.46827 * 60.00243 * 11 10 8 13 13 C 1.52999 * 109.46959 * 180.02562 * 11 10 8 14 14 C 1.52993 * 109.47159 * 300.00261 * 11 10 8 15 15 C 1.53047 * 109.53670 * 61.36290 * 5 4 2 16 16 C 1.53190 * 109.31196 * 298.63569 * 15 5 4 17 17 N 1.46924 * 109.59233 * 120.28645 * 2 1 3 18 18 C 1.34775 * 120.62632 * 353.53032 * 17 2 1 19 19 O 1.21588 * 120.00368 * 5.03304 * 18 17 2 20 20 N 1.34781 * 120.00259 * 185.03091 * 18 17 2 21 21 C 1.46491 * 120.00360 * 185.12285 * 20 18 17 22 22 C 1.50703 * 109.47449 * 179.97438 * 21 20 18 23 23 H 1.07996 * 119.99224 * 359.97438 * 22 21 20 24 24 C 1.37878 * 120.00180 * 180.02562 * 22 21 20 25 25 N 1.31514 * 119.99723 * 179.97438 * 24 22 21 26 26 Si 1.86801 * 119.99955 * 359.97438 * 24 22 21 27 27 H 1.48498 * 109.46755 * 90.00505 * 26 24 22 28 28 H 1.48500 * 109.46878 * 209.99770 * 26 24 22 29 29 H 1.48497 * 109.47257 * 330.00346 * 26 24 22 30 30 H 1.09001 * 109.46990 * 183.07444 * 1 2 3 31 31 H 1.09007 * 109.46710 * 303.06618 * 1 2 3 32 32 H 1.08994 * 109.47117 * 63.06850 * 1 2 3 33 33 H 1.09004 * 109.49373 * 305.38209 * 4 2 1 34 34 H 1.08996 * 109.50154 * 65.47756 * 4 2 1 35 35 H 0.97005 * 119.99786 * 24.99551 * 7 5 4 36 36 H 1.08993 * 109.47080 * 60.00217 * 12 11 10 37 37 H 1.09005 * 109.46289 * 179.97438 * 12 11 10 38 38 H 1.09000 * 109.47417 * 299.99745 * 12 11 10 39 39 H 1.09000 * 109.47494 * 59.99731 * 13 11 10 40 40 H 1.08996 * 109.46834 * 180.02562 * 13 11 10 41 41 H 1.09006 * 109.46909 * 299.99797 * 13 11 10 42 42 H 1.09007 * 109.47497 * 59.99621 * 14 11 10 43 43 H 1.09000 * 109.47661 * 180.02562 * 14 11 10 44 44 H 1.08998 * 109.47553 * 300.00219 * 14 11 10 45 45 H 1.09003 * 109.49745 * 58.58683 * 15 5 4 46 46 H 1.08999 * 109.49371 * 178.68648 * 15 5 4 47 47 H 1.09003 * 109.58232 * 174.42698 * 16 15 5 48 48 H 1.09009 * 109.58532 * 294.84580 * 16 15 5 49 49 H 0.96996 * 119.99325 * 5.11675 * 20 18 17 50 50 H 1.09000 * 109.47418 * 299.99958 * 21 20 18 51 51 H 1.09001 * 109.47205 * 59.99728 * 21 20 18 52 52 H 0.96996 * 119.99569 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8954 1.0269 0.0000 4 6 2.0435 -0.7278 -1.2465 5 6 3.5678 -0.8434 -1.1731 6 1 3.9379 -1.3391 -2.0705 7 7 4.1548 0.4955 -1.0780 8 6 5.4179 0.7088 -1.4968 9 8 6.0697 -0.2093 -1.9536 10 8 5.9572 1.9394 -1.4099 11 6 7.3220 2.0957 -1.8802 12 6 7.3976 1.7174 -3.3608 13 6 7.7592 3.5511 -1.7022 14 6 8.2474 1.1834 -1.0728 15 6 3.9603 -1.6609 0.0597 16 6 3.4686 -0.9437 1.3209 17 7 2.0227 -0.6981 1.1953 18 6 1.1673 -1.1063 2.1534 19 8 -0.0313 -0.9805 1.9922 20 7 1.6404 -1.6542 3.2903 21 6 0.7110 -2.2000 4.2824 22 6 1.4886 -2.7490 5.4508 23 1 2.5673 -2.6968 5.4536 24 6 0.8230 -3.3187 6.5154 25 7 1.5018 -3.7982 7.5347 26 14 -1.0428 -3.4095 6.5099 27 1 -1.4745 -4.6827 5.8793 28 1 -1.5451 -3.3535 7.9063 29 1 -1.5918 -2.2645 5.7400 30 1 -0.3633 -1.0262 0.0551 31 1 -0.3633 0.5607 0.8613 32 1 -0.3633 0.4654 -0.9162 33 1 1.6049 -1.7246 -1.2922 34 1 1.7637 -0.1655 -2.1373 35 1 3.6343 1.2285 -0.7137 36 1 6.7384 2.3674 -3.9360 37 1 8.4221 1.8352 -3.7139 38 1 7.0863 0.6805 -3.4872 39 1 7.7053 3.8203 -0.6474 40 1 8.7835 3.6685 -2.0557 41 1 7.0999 4.2014 -2.2773 42 1 7.9360 0.1464 -1.1991 43 1 9.2720 1.3010 -1.4255 44 1 8.1935 1.4528 -0.0180 45 1 3.5036 -2.6489 0.0016 46 1 5.0449 -1.7626 0.0985 47 1 3.6577 -1.5685 2.1937 48 1 3.9922 0.0063 1.4286 49 1 2.5963 -1.6871 3.4515 50 1 0.0438 -1.4105 4.6284 51 1 0.1240 -2.9990 3.8295 52 1 1.0335 -4.1986 8.2838 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000787358929.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:34:26 Heat of formation + Delta-G solvation = -95.925259 kcal Electronic energy + Delta-G solvation = -31506.065828 eV Core-core repulsion = 27313.518027 eV Total energy + Delta-G solvation = -4192.547801 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 341.215 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -41.19197 -40.31550 -38.36855 -36.80806 -34.79450 -34.58801 -34.01377 -32.88098 -31.83170 -31.11453 -28.04635 -27.72738 -27.66876 -27.08274 -24.69052 -23.20890 -22.80189 -21.53889 -20.54770 -20.30031 -19.19548 -18.48216 -17.72726 -16.77781 -16.44896 -16.33853 -16.03881 -15.73442 -15.08390 -14.91617 -14.84125 -14.50866 -14.18468 -14.02442 -13.91638 -13.74761 -13.60823 -13.04655 -12.82044 -12.65558 -12.52091 -12.40081 -12.29389 -12.21424 -12.19267 -12.06594 -11.88436 -11.75444 -11.65647 -11.56927 -11.16009 -11.09593 -10.94399 -10.81445 -10.72788 -10.62796 -10.25865 -9.94355 -9.47489 -9.40733 -8.78237 -8.76150 -8.44482 -7.96422 -6.20283 -4.22123 1.94042 2.64291 3.01503 3.27814 3.34920 3.43340 3.73942 3.88049 4.34184 4.38700 4.40508 4.44653 4.52642 4.59139 4.66394 4.75264 4.93017 5.05471 5.14771 5.15372 5.21151 5.22639 5.23298 5.34489 5.37222 5.46698 5.52727 5.55171 5.59748 5.66947 5.67432 5.77180 5.79489 5.88545 5.93309 5.98015 6.02469 6.19459 6.32524 6.34756 6.52257 6.74677 6.92419 7.12563 7.19413 7.27523 7.39943 7.51748 8.17698 8.26194 8.67132 8.80253 9.20711 9.41375 10.91747 Molecular weight = 341.21amu Principal moments of inertia in cm(-1) A = 0.017429 B = 0.002439 C = 0.002255 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1606.145380 B =11478.511061 C =12411.539912 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C 0.162 3.838 3 H 0.060 0.940 4 C -0.140 4.140 5 C 0.166 3.834 6 H 0.094 0.906 7 N -0.704 5.704 8 C 0.651 3.349 9 O -0.568 6.568 10 O -0.366 6.366 11 C 0.137 3.863 12 C -0.183 4.183 13 C -0.141 4.141 14 C -0.184 4.184 15 C -0.147 4.147 16 C 0.113 3.887 17 N -0.634 5.634 18 C 0.699 3.301 19 O -0.593 6.593 20 N -0.724 5.724 21 C 0.238 3.762 22 C -0.542 4.542 23 H 0.078 0.922 24 C 0.077 3.923 25 N -0.893 5.893 26 Si 0.878 3.122 27 H -0.274 1.274 28 H -0.284 1.284 29 H -0.260 1.260 30 H 0.075 0.925 31 H 0.076 0.924 32 H 0.035 0.965 33 H 0.090 0.910 34 H 0.081 0.919 35 H 0.405 0.595 36 H 0.058 0.942 37 H 0.069 0.931 38 H 0.088 0.912 39 H 0.067 0.933 40 H 0.080 0.920 41 H 0.066 0.934 42 H 0.088 0.912 43 H 0.069 0.931 44 H 0.060 0.940 45 H 0.083 0.917 46 H 0.081 0.919 47 H 0.085 0.915 48 H 0.064 0.936 49 H 0.390 0.610 50 H 0.024 0.976 51 H 0.017 0.983 52 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.006 12.536 -22.375 27.909 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C 0.058 3.942 3 H 0.078 0.922 4 C -0.179 4.179 5 C 0.062 3.938 6 H 0.112 0.888 7 N -0.365 5.365 8 C 0.404 3.596 9 O -0.458 6.458 10 O -0.281 6.281 11 C 0.100 3.900 12 C -0.240 4.240 13 C -0.199 4.199 14 C -0.241 4.241 15 C -0.187 4.187 16 C -0.010 4.010 17 N -0.374 5.374 18 C 0.401 3.599 19 O -0.472 6.472 20 N -0.378 5.378 21 C 0.116 3.884 22 C -0.580 4.580 23 H 0.096 0.904 24 C -0.126 4.126 25 N -0.531 5.531 26 Si 0.704 3.296 27 H -0.199 1.199 28 H -0.210 1.210 29 H -0.184 1.184 30 H 0.094 0.906 31 H 0.095 0.905 32 H 0.053 0.947 33 H 0.108 0.892 34 H 0.099 0.901 35 H 0.241 0.759 36 H 0.077 0.923 37 H 0.088 0.912 38 H 0.107 0.893 39 H 0.086 0.914 40 H 0.098 0.902 41 H 0.085 0.915 42 H 0.107 0.893 43 H 0.088 0.912 44 H 0.079 0.921 45 H 0.101 0.899 46 H 0.100 0.900 47 H 0.104 0.896 48 H 0.082 0.918 49 H 0.226 0.774 50 H 0.041 0.959 51 H 0.035 0.965 52 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 10.478 12.089 -22.499 27.606 hybrid contribution -0.417 0.133 0.428 0.612 sum 10.061 12.222 -22.070 27.160 Atomic orbital electron populations 1.22178 0.91974 1.04485 1.00338 1.20945 0.96401 0.93769 0.83099 0.92175 1.22375 0.93423 1.03404 0.98699 1.20945 0.92681 0.80802 0.99323 0.88777 1.44967 1.11911 1.12957 1.66618 1.18107 0.82604 0.81534 0.77342 1.90896 1.61026 1.43709 1.50130 1.86311 1.31879 1.30888 1.79027 1.22056 0.77037 0.96619 0.94273 1.22514 1.02758 1.04591 0.94140 1.21867 1.01645 0.92996 1.03352 1.22519 0.99300 1.02316 0.99982 1.22340 1.02222 0.99656 0.94439 1.21587 0.80907 1.00185 0.98346 1.47389 1.06160 1.62871 1.20969 1.16066 0.84926 0.78550 0.80365 1.90910 1.13830 1.62499 1.80007 1.45673 1.10878 1.62638 1.18599 1.19341 0.89431 0.93423 0.86242 1.21089 0.95265 1.40033 1.01598 0.90427 1.24786 0.98736 0.94227 0.94895 1.69883 1.36067 1.39060 1.08053 0.86805 0.85549 0.79637 0.77619 1.19907 1.20976 1.18416 0.90624 0.90496 0.94658 0.89184 0.90057 0.75923 0.92274 0.91206 0.89335 0.91379 0.90167 0.91526 0.89286 0.91207 0.92061 0.89872 0.90035 0.89642 0.91808 0.77448 0.95858 0.96521 0.92293 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.79 7.59 37.16 0.28 -1.51 16 2 C 0.16 1.86 3.18 -67.60 -0.22 1.65 16 3 H 0.06 0.60 6.64 -51.93 -0.34 0.26 16 4 C -0.14 -1.27 5.07 -26.61 -0.13 -1.40 16 5 C 0.17 1.53 2.78 -67.89 -0.19 1.35 16 6 H 0.09 0.91 7.58 -51.93 -0.39 0.52 16 7 N -0.70 -6.45 4.27 -58.69 -0.25 -6.70 16 8 C 0.65 7.09 8.02 54.05 0.43 7.52 16 9 O -0.57 -7.23 11.54 -19.28 -0.22 -7.45 16 10 O -0.37 -3.75 9.94 -40.33 -0.40 -4.15 16 11 C 0.14 1.16 1.13 -90.62 -0.10 1.06 16 12 C -0.18 -1.48 8.37 37.16 0.31 -1.17 16 13 C -0.14 -0.87 8.85 37.16 0.33 -0.54 16 14 C -0.18 -1.58 8.37 37.15 0.31 -1.27 16 15 C -0.15 -1.51 5.77 -26.61 -0.15 -1.66 16 16 C 0.11 1.33 6.10 -3.56 -0.02 1.31 16 17 N -0.63 -8.89 2.98 -170.68 -0.51 -9.40 16 18 C 0.70 13.27 8.22 -86.92 -0.71 12.55 16 19 O -0.59 -12.88 11.74 5.29 0.06 -12.81 16 20 N -0.72 -14.79 5.41 -66.42 -0.36 -15.15 16 21 C 0.24 5.86 4.50 -5.20 -0.02 5.84 16 22 C -0.54 -14.86 9.83 -34.44 -0.34 -15.20 16 23 H 0.08 2.22 7.84 -52.49 -0.41 1.81 16 24 C 0.08 2.18 5.47 -17.82 -0.10 2.08 16 25 N -0.89 -26.53 13.96 55.43 0.77 -25.76 16 26 Si 0.88 21.45 27.47 -169.99 -4.67 16.79 16 27 H -0.27 -6.59 7.11 56.52 0.40 -6.18 16 28 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 29 H -0.26 -6.32 6.54 56.52 0.37 -5.95 16 30 H 0.07 1.21 6.79 -51.93 -0.35 0.85 16 31 H 0.08 1.25 6.70 -51.93 -0.35 0.90 16 32 H 0.03 0.38 8.14 -51.93 -0.42 -0.04 16 33 H 0.09 0.87 8.14 -51.93 -0.42 0.45 16 34 H 0.08 0.61 8.14 -51.93 -0.42 0.18 16 35 H 0.40 3.31 6.98 -40.82 -0.28 3.03 16 36 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 37 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 38 H 0.09 0.91 5.88 -51.93 -0.31 0.60 16 39 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 40 H 0.08 0.36 8.14 -51.93 -0.42 -0.06 16 41 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 42 H 0.09 0.96 5.88 -51.92 -0.31 0.65 16 43 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 44 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 45 H 0.08 0.88 8.14 -51.93 -0.42 0.46 16 46 H 0.08 0.86 8.14 -51.93 -0.42 0.44 16 47 H 0.09 1.07 5.76 -51.93 -0.30 0.77 16 48 H 0.06 0.70 7.74 -51.92 -0.40 0.29 16 49 H 0.39 7.21 5.93 -40.82 -0.24 6.96 16 50 H 0.02 0.61 7.20 -51.93 -0.37 0.24 16 51 H 0.02 0.43 7.57 -51.93 -0.39 0.04 16 52 H 0.27 7.43 8.31 -40.82 -0.34 7.09 16 LS Contribution 395.84 15.07 5.97 5.97 Total: -1.00 -32.39 395.84 -8.63 -41.02 By element: Atomic # 1 Polarization: 15.74 SS G_CDS: -8.70 Total: 7.05 kcal Atomic # 6 Polarization: 10.94 SS G_CDS: -0.32 Total: 10.61 kcal Atomic # 7 Polarization: -56.66 SS G_CDS: -0.35 Total: -57.01 kcal Atomic # 8 Polarization: -23.86 SS G_CDS: -0.56 Total: -24.42 kcal Atomic # 14 Polarization: 21.45 SS G_CDS: -4.67 Total: 16.79 kcal Total LS contribution 5.97 Total: 5.97 kcal Total: -32.39 -8.63 -41.02 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000787358929.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -54.907 kcal (2) G-P(sol) polarization free energy of solvation -32.388 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.295 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.630 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.018 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.925 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds