Wall clock time and date at job start Wed Apr 1 2020 00:34:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08998 * 109.58577 * 2 1 4 4 C 1.53198 * 109.58368 * 239.72052 * 2 1 3 5 5 C 1.53041 * 109.31289 * 185.43523 * 4 2 1 6 6 H 1.08995 * 109.45830 * 181.38007 * 5 4 2 7 7 N 1.46496 * 109.46109 * 301.34282 * 5 4 2 8 8 C 1.34773 * 120.00118 * 204.99784 * 7 5 4 9 9 O 1.21509 * 119.99919 * 0.02562 * 8 7 5 10 10 O 1.34643 * 120.00061 * 179.97438 * 8 7 5 11 11 C 1.45200 * 116.99978 * 180.02562 * 10 8 7 12 12 C 1.53002 * 109.46827 * 60.00243 * 11 10 8 13 13 C 1.52999 * 109.46959 * 180.02562 * 11 10 8 14 14 C 1.52993 * 109.47159 * 300.00261 * 11 10 8 15 15 C 1.53047 * 109.53670 * 61.36290 * 5 4 2 16 16 C 1.53190 * 109.31196 * 298.63569 * 15 5 4 17 17 N 1.46924 * 109.59233 * 120.28645 * 2 1 3 18 18 C 1.34775 * 120.62632 * 353.53032 * 17 2 1 19 19 O 1.21588 * 120.00368 * 5.03304 * 18 17 2 20 20 N 1.34781 * 120.00259 * 185.03091 * 18 17 2 21 21 C 1.46491 * 120.00360 * 185.12285 * 20 18 17 22 22 C 1.50703 * 109.47449 * 179.97438 * 21 20 18 23 23 H 1.07996 * 119.99224 * 359.97438 * 22 21 20 24 24 C 1.37878 * 120.00180 * 180.02562 * 22 21 20 25 25 N 1.31514 * 119.99723 * 179.97438 * 24 22 21 26 26 Si 1.86801 * 119.99955 * 359.97438 * 24 22 21 27 27 H 1.48498 * 109.46755 * 90.00505 * 26 24 22 28 28 H 1.48500 * 109.46878 * 209.99770 * 26 24 22 29 29 H 1.48497 * 109.47257 * 330.00346 * 26 24 22 30 30 H 1.09001 * 109.46990 * 183.07444 * 1 2 3 31 31 H 1.09007 * 109.46710 * 303.06618 * 1 2 3 32 32 H 1.08994 * 109.47117 * 63.06850 * 1 2 3 33 33 H 1.09004 * 109.49373 * 305.38209 * 4 2 1 34 34 H 1.08996 * 109.50154 * 65.47756 * 4 2 1 35 35 H 0.97005 * 119.99786 * 24.99551 * 7 5 4 36 36 H 1.08993 * 109.47080 * 60.00217 * 12 11 10 37 37 H 1.09005 * 109.46289 * 179.97438 * 12 11 10 38 38 H 1.09000 * 109.47417 * 299.99745 * 12 11 10 39 39 H 1.09000 * 109.47494 * 59.99731 * 13 11 10 40 40 H 1.08996 * 109.46834 * 180.02562 * 13 11 10 41 41 H 1.09006 * 109.46909 * 299.99797 * 13 11 10 42 42 H 1.09007 * 109.47497 * 59.99621 * 14 11 10 43 43 H 1.09000 * 109.47661 * 180.02562 * 14 11 10 44 44 H 1.08998 * 109.47553 * 300.00219 * 14 11 10 45 45 H 1.09003 * 109.49745 * 58.58683 * 15 5 4 46 46 H 1.08999 * 109.49371 * 178.68648 * 15 5 4 47 47 H 1.09003 * 109.58232 * 174.42698 * 16 15 5 48 48 H 1.09009 * 109.58532 * 294.84580 * 16 15 5 49 49 H 0.96996 * 119.99325 * 5.11675 * 20 18 17 50 50 H 1.09000 * 109.47418 * 299.99958 * 21 20 18 51 51 H 1.09001 * 109.47205 * 59.99728 * 21 20 18 52 52 H 0.96996 * 119.99569 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8954 1.0269 0.0000 4 6 2.0435 -0.7278 -1.2465 5 6 3.5678 -0.8434 -1.1731 6 1 3.9379 -1.3391 -2.0705 7 7 4.1548 0.4955 -1.0780 8 6 5.4179 0.7088 -1.4968 9 8 6.0697 -0.2093 -1.9536 10 8 5.9572 1.9394 -1.4099 11 6 7.3220 2.0957 -1.8802 12 6 7.3976 1.7174 -3.3608 13 6 7.7592 3.5511 -1.7022 14 6 8.2474 1.1834 -1.0728 15 6 3.9603 -1.6609 0.0597 16 6 3.4686 -0.9437 1.3209 17 7 2.0227 -0.6981 1.1953 18 6 1.1673 -1.1063 2.1534 19 8 -0.0313 -0.9805 1.9922 20 7 1.6404 -1.6542 3.2903 21 6 0.7110 -2.2000 4.2824 22 6 1.4886 -2.7490 5.4508 23 1 2.5673 -2.6968 5.4536 24 6 0.8230 -3.3187 6.5154 25 7 1.5018 -3.7982 7.5347 26 14 -1.0428 -3.4095 6.5099 27 1 -1.4745 -4.6827 5.8793 28 1 -1.5451 -3.3535 7.9063 29 1 -1.5918 -2.2645 5.7400 30 1 -0.3633 -1.0262 0.0551 31 1 -0.3633 0.5607 0.8613 32 1 -0.3633 0.4654 -0.9162 33 1 1.6049 -1.7246 -1.2922 34 1 1.7637 -0.1655 -2.1373 35 1 3.6343 1.2285 -0.7137 36 1 6.7384 2.3674 -3.9360 37 1 8.4221 1.8352 -3.7139 38 1 7.0863 0.6805 -3.4872 39 1 7.7053 3.8203 -0.6474 40 1 8.7835 3.6685 -2.0557 41 1 7.0999 4.2014 -2.2773 42 1 7.9360 0.1464 -1.1991 43 1 9.2720 1.3010 -1.4255 44 1 8.1935 1.4528 -0.0180 45 1 3.5036 -2.6489 0.0016 46 1 5.0449 -1.7626 0.0985 47 1 3.6577 -1.5685 2.1937 48 1 3.9922 0.0063 1.4286 49 1 2.5963 -1.6871 3.4515 50 1 0.0438 -1.4105 4.6284 51 1 0.1240 -2.9990 3.8295 52 1 1.0335 -4.1986 8.2838 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000787358929.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:34:19 Heat of formation + Delta-G solvation = -117.881023 kcal Electronic energy + Delta-G solvation = -31507.017901 eV Core-core repulsion = 27313.518027 eV Total energy + Delta-G solvation = -4193.499874 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 341.215 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -42.08405 -41.43775 -39.42679 -37.75465 -36.39922 -35.55550 -34.87790 -34.63124 -33.25037 -32.07582 -29.75832 -28.32501 -28.29226 -28.25489 -25.74185 -24.40694 -23.99142 -22.87878 -21.73905 -21.12931 -20.47464 -19.25190 -19.17319 -18.21632 -17.56527 -17.36080 -17.17571 -16.83705 -16.38969 -16.04614 -15.77457 -15.61548 -15.41651 -15.26530 -14.93394 -14.77631 -14.66608 -14.43702 -14.26900 -14.02076 -13.46313 -13.32042 -13.24726 -13.15364 -12.99309 -12.90295 -12.84904 -12.81316 -12.66149 -12.65307 -12.48990 -12.24771 -12.09056 -12.02104 -11.89619 -11.74204 -11.61522 -11.33159 -11.04960 -10.90531 -10.24010 -10.22092 -9.93877 -9.38263 -8.39090 -6.45833 1.21002 1.34005 1.35791 1.49346 1.74919 1.82512 2.24162 2.29414 2.96684 3.09645 3.17948 3.62410 3.70505 3.79884 3.85099 3.88218 3.99573 4.01502 4.16840 4.27907 4.33669 4.56993 4.58240 4.66098 4.70629 4.74958 4.78161 4.81443 4.83330 4.86988 4.92048 4.92336 4.94588 4.97871 5.05930 5.08441 5.15715 5.25759 5.27992 5.32972 5.33328 5.43596 5.45294 5.60895 5.63555 5.81550 5.96771 6.20963 6.43521 6.55839 7.12268 7.21238 7.39263 7.71960 8.75782 Molecular weight = 341.21amu Principal moments of inertia in cm(-1) A = 0.017429 B = 0.002439 C = 0.002255 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1606.145380 B =11478.511061 C =12411.539912 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C 0.157 3.843 3 H 0.085 0.915 4 C -0.127 4.127 5 C 0.173 3.827 6 H 0.096 0.904 7 N -0.695 5.695 8 C 0.648 3.352 9 O -0.589 6.589 10 O -0.371 6.371 11 C 0.126 3.874 12 C -0.178 4.178 13 C -0.137 4.137 14 C -0.181 4.181 15 C -0.140 4.140 16 C 0.113 3.887 17 N -0.623 5.623 18 C 0.696 3.304 19 O -0.622 6.622 20 N -0.728 5.728 21 C 0.254 3.746 22 C -0.545 4.545 23 H 0.055 0.945 24 C 0.026 3.974 25 N -0.932 5.932 26 Si 0.940 3.060 27 H -0.265 1.265 28 H -0.274 1.274 29 H -0.259 1.259 30 H 0.046 0.954 31 H 0.045 0.955 32 H 0.068 0.932 33 H 0.085 0.915 34 H 0.108 0.892 35 H 0.411 0.589 36 H 0.062 0.938 37 H 0.087 0.913 38 H 0.064 0.936 39 H 0.066 0.934 40 H 0.100 0.900 41 H 0.070 0.930 42 H 0.064 0.936 43 H 0.088 0.912 44 H 0.058 0.942 45 H 0.080 0.920 46 H 0.080 0.920 47 H 0.075 0.925 48 H 0.078 0.922 49 H 0.398 0.602 50 H 0.010 0.990 51 H 0.009 0.991 52 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.232 13.977 -24.383 30.266 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C 0.054 3.946 3 H 0.103 0.897 4 C -0.166 4.166 5 C 0.070 3.930 6 H 0.114 0.886 7 N -0.356 5.356 8 C 0.401 3.599 9 O -0.480 6.480 10 O -0.286 6.286 11 C 0.090 3.910 12 C -0.235 4.235 13 C -0.194 4.194 14 C -0.238 4.238 15 C -0.179 4.179 16 C -0.010 4.010 17 N -0.362 5.362 18 C 0.398 3.602 19 O -0.504 6.504 20 N -0.384 5.384 21 C 0.129 3.871 22 C -0.583 4.583 23 H 0.073 0.927 24 C -0.174 4.174 25 N -0.571 5.571 26 Si 0.763 3.237 27 H -0.190 1.190 28 H -0.199 1.199 29 H -0.184 1.184 30 H 0.065 0.935 31 H 0.064 0.936 32 H 0.086 0.914 33 H 0.104 0.896 34 H 0.127 0.873 35 H 0.249 0.751 36 H 0.081 0.919 37 H 0.106 0.894 38 H 0.083 0.917 39 H 0.085 0.915 40 H 0.118 0.882 41 H 0.089 0.911 42 H 0.083 0.917 43 H 0.106 0.894 44 H 0.077 0.923 45 H 0.098 0.902 46 H 0.098 0.902 47 H 0.093 0.907 48 H 0.096 0.904 49 H 0.235 0.765 50 H 0.028 0.972 51 H 0.027 0.973 52 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 10.743 13.561 -24.548 30.032 hybrid contribution -0.372 -0.268 0.995 1.096 sum 10.371 13.293 -23.553 28.965 Atomic orbital electron populations 1.21987 0.93273 1.02410 1.00551 1.21235 0.95371 0.95156 0.82867 0.89691 1.22286 0.92790 1.03304 0.98225 1.20855 0.92757 0.80737 0.98671 0.88598 1.44886 1.11476 1.13043 1.66185 1.18254 0.82852 0.81553 0.77193 1.90897 1.61636 1.44395 1.51045 1.86321 1.32844 1.30392 1.79050 1.22358 0.76228 0.98028 0.94365 1.22458 1.03935 1.03062 0.94058 1.21888 1.02844 0.91217 1.03486 1.22478 1.00420 1.00862 1.00030 1.22268 1.01985 0.99565 0.94130 1.21713 0.79470 1.00964 0.98853 1.47408 1.06545 1.61793 1.20432 1.16210 0.85056 0.78378 0.80589 1.90912 1.15353 1.63564 1.80601 1.45448 1.10750 1.63337 1.18819 1.18895 0.89402 0.92604 0.86152 1.21276 0.94556 1.39812 1.02659 0.92681 1.25601 1.03369 0.93911 0.94551 1.69986 1.38040 1.40176 1.08900 0.85824 0.79971 0.79818 0.78065 1.18958 1.19899 1.18368 0.93450 0.93604 0.91372 0.89616 0.87328 0.75123 0.91880 0.89396 0.91691 0.91515 0.88157 0.91118 0.91684 0.89365 0.92311 0.90153 0.90155 0.90654 0.90376 0.76481 0.97244 0.97332 0.91872 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.21 7.59 71.98 0.55 -2.67 16 2 C 0.16 3.26 3.18 44.98 0.14 3.40 16 3 H 0.09 1.41 6.64 -2.39 -0.02 1.40 16 4 C -0.13 -1.95 5.07 30.67 0.16 -1.79 16 5 C 0.17 2.82 2.78 45.02 0.13 2.95 16 6 H 0.10 1.65 7.58 -2.39 -0.02 1.63 16 7 N -0.70 -11.14 4.27 -570.00 -2.43 -13.57 16 8 C 0.65 13.13 8.02 129.79 1.04 14.17 16 9 O -0.59 -14.49 11.54 19.81 0.23 -14.26 16 10 O -0.37 -7.00 9.94 -55.52 -0.55 -7.55 16 11 C 0.13 1.93 1.13 -10.80 -0.01 1.92 16 12 C -0.18 -2.58 8.37 71.98 0.60 -1.98 16 13 C -0.14 -1.36 8.85 71.98 0.64 -0.72 16 14 C -0.18 -2.88 8.37 71.98 0.60 -2.28 16 15 C -0.14 -2.69 5.77 30.67 0.18 -2.51 16 16 C 0.11 2.52 6.10 86.31 0.53 3.04 16 17 N -0.62 -16.83 2.98 -812.18 -2.42 -19.25 16 18 C 0.70 26.41 8.22 179.05 1.47 27.88 16 19 O -0.62 -27.32 11.74 -3.99 -0.05 -27.37 16 20 N -0.73 -30.11 5.41 -482.30 -2.61 -32.72 16 21 C 0.25 12.65 4.50 85.64 0.39 13.03 16 22 C -0.55 -30.48 9.83 25.60 0.25 -30.23 16 23 H 0.06 3.25 7.84 -2.91 -0.02 3.23 16 24 C 0.03 1.47 5.47 84.65 0.46 1.94 16 25 N -0.93 -56.08 13.96 21.45 0.30 -55.78 16 26 Si 0.94 44.42 27.47 68.60 1.88 46.30 16 27 H -0.26 -12.07 7.11 99.48 0.71 -11.37 16 28 H -0.27 -12.42 7.11 99.48 0.71 -11.71 16 29 H -0.26 -12.17 6.54 99.48 0.65 -11.52 16 30 H 0.05 1.49 6.79 -2.39 -0.02 1.47 16 31 H 0.04 1.47 6.70 -2.38 -0.02 1.45 16 32 H 0.07 1.29 8.14 -2.39 -0.02 1.27 16 33 H 0.09 1.47 8.14 -2.38 -0.02 1.45 16 34 H 0.11 1.17 8.14 -2.39 -0.02 1.15 16 35 H 0.41 5.52 6.98 -92.70 -0.65 4.88 16 36 H 0.06 0.85 8.14 -2.39 -0.02 0.83 16 37 H 0.09 0.92 8.14 -2.38 -0.02 0.90 16 38 H 0.06 1.28 5.88 -2.39 -0.01 1.27 16 39 H 0.07 0.69 8.14 -2.39 -0.02 0.67 16 40 H 0.10 0.59 8.14 -2.39 -0.02 0.57 16 41 H 0.07 0.65 8.14 -2.38 -0.02 0.63 16 42 H 0.06 1.38 5.88 -2.38 -0.01 1.36 16 43 H 0.09 1.03 8.14 -2.39 -0.02 1.01 16 44 H 0.06 0.94 8.14 -2.39 -0.02 0.92 16 45 H 0.08 1.62 8.14 -2.39 -0.02 1.60 16 46 H 0.08 1.61 8.14 -2.39 -0.02 1.60 16 47 H 0.08 1.86 5.76 -2.39 -0.01 1.84 16 48 H 0.08 1.56 7.74 -2.38 -0.02 1.54 16 49 H 0.40 14.95 5.93 -92.71 -0.55 14.40 16 50 H 0.01 0.51 7.20 -2.39 -0.02 0.49 16 51 H 0.01 0.45 7.57 -2.39 -0.02 0.43 16 52 H 0.27 15.24 8.31 -92.71 -0.77 14.47 16 Total: -1.00 -71.35 395.84 1.14 -70.21 By element: Atomic # 1 Polarization: 28.17 SS G_CDS: -0.32 Total: 27.85 kcal Atomic # 6 Polarization: 19.03 SS G_CDS: 7.12 Total: 26.14 kcal Atomic # 7 Polarization: -114.16 SS G_CDS: -7.17 Total: -121.33 kcal Atomic # 8 Polarization: -48.80 SS G_CDS: -0.37 Total: -49.17 kcal Atomic # 14 Polarization: 44.42 SS G_CDS: 1.88 Total: 46.30 kcal Total: -71.35 1.14 -70.21 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000787358929.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -47.673 kcal (2) G-P(sol) polarization free energy of solvation -71.350 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -119.024 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.143 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.208 kcal (6) G-S(sol) free energy of system = (1) + (5) -117.881 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds