Wall clock time and date at job start Wed Apr 1 2020 00:34:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08995 * 109.58535 * 2 1 4 4 C 1.53188 * 109.58677 * 120.28805 * 2 1 3 5 5 C 1.53039 * 109.31578 * 174.56735 * 4 2 1 6 6 H 1.09000 * 109.46485 * 178.61562 * 5 4 2 7 7 N 1.46500 * 109.46167 * 58.63377 * 5 4 2 8 8 C 1.34781 * 120.00141 * 154.97465 * 7 5 4 9 9 O 1.21510 * 119.99477 * 0.02562 * 8 7 5 10 10 O 1.34631 * 120.00266 * 180.02562 * 8 7 5 11 11 C 1.45199 * 117.00189 * 180.02562 * 10 8 7 12 12 C 1.52998 * 109.46748 * 60.00197 * 11 10 8 13 13 C 1.53000 * 109.47076 * 180.02562 * 11 10 8 14 14 C 1.52997 * 109.46963 * 300.00185 * 11 10 8 15 15 C 1.53045 * 109.53571 * 298.63517 * 5 4 2 16 16 C 1.53190 * 109.31563 * 61.36043 * 15 5 4 17 17 N 1.46923 * 109.70187 * 239.64670 * 2 1 3 18 18 C 1.34776 * 120.63696 * 6.55506 * 17 2 1 19 19 O 1.21591 * 119.99342 * 5.87373 * 18 17 2 20 20 N 1.34777 * 120.00450 * 185.87398 * 18 17 2 21 21 C 1.46503 * 119.99934 * 185.13868 * 20 18 17 22 22 C 1.50693 * 109.47070 * 180.02562 * 21 20 18 23 23 H 1.08000 * 120.00110 * 359.97438 * 22 21 20 24 24 C 1.37872 * 120.00103 * 179.97438 * 22 21 20 25 25 N 1.31518 * 120.00578 * 179.97438 * 24 22 21 26 26 Si 1.86805 * 120.00034 * 359.97438 * 24 22 21 27 27 H 1.48502 * 109.46939 * 90.00033 * 26 24 22 28 28 H 1.48496 * 109.47546 * 209.99987 * 26 24 22 29 29 H 1.48500 * 109.46835 * 330.00295 * 26 24 22 30 30 H 1.09005 * 109.47382 * 294.16556 * 1 2 3 31 31 H 1.09000 * 109.47281 * 54.16542 * 1 2 3 32 32 H 1.09007 * 109.47196 * 174.16602 * 1 2 3 33 33 H 1.08998 * 109.50219 * 54.61452 * 4 2 1 34 34 H 1.09000 * 109.49797 * 294.51482 * 4 2 1 35 35 H 0.97003 * 119.99986 * 334.98261 * 7 5 4 36 36 H 1.09000 * 109.47483 * 60.00276 * 12 11 10 37 37 H 1.09000 * 109.46822 * 179.97438 * 12 11 10 38 38 H 1.08999 * 109.47187 * 299.99746 * 12 11 10 39 39 H 1.08996 * 109.47415 * 59.99980 * 13 11 10 40 40 H 1.08997 * 109.46722 * 180.02562 * 13 11 10 41 41 H 1.09000 * 109.47103 * 299.99691 * 13 11 10 42 42 H 1.08999 * 109.47366 * 60.00013 * 14 11 10 43 43 H 1.09000 * 109.46849 * 179.97438 * 14 11 10 44 44 H 1.08996 * 109.47136 * 299.99780 * 14 11 10 45 45 H 1.09002 * 109.49754 * 181.31540 * 15 5 4 46 46 H 1.08996 * 109.49634 * 301.41159 * 15 5 4 47 47 H 1.08995 * 109.59281 * 185.57968 * 16 15 5 48 48 H 1.09004 * 109.58327 * 65.15243 * 16 15 5 49 49 H 0.96989 * 119.99784 * 5.13522 * 20 18 17 50 50 H 1.08999 * 109.47100 * 299.99851 * 21 20 18 51 51 H 1.08997 * 109.47056 * 59.99703 * 21 20 18 52 52 H 0.96990 * 120.00462 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8953 1.0269 0.0000 4 6 2.0435 -0.7279 1.2462 5 6 3.5678 -0.8434 1.1729 6 1 3.9380 -1.3392 2.0702 7 7 4.1547 0.4955 1.0775 8 6 5.4177 0.7091 1.4967 9 8 6.0697 -0.2090 1.9533 10 8 5.9570 1.9396 1.4095 11 6 7.3219 2.0960 1.8793 12 6 8.2470 1.1836 1.0714 13 6 7.7586 3.5516 1.7022 14 6 7.3982 1.7177 3.3598 15 6 3.9603 -1.6608 -0.0600 16 6 3.4685 -0.9435 -1.3211 17 7 2.0253 -0.6990 -1.1936 18 6 1.1722 -1.1078 -2.1536 19 8 -0.0041 -0.8066 -2.0900 20 7 1.6229 -1.8503 -3.1841 21 6 0.7213 -2.1997 -4.2848 22 6 1.4655 -3.0282 -5.3000 23 1 2.5060 -3.2700 -5.1415 24 6 0.8179 -3.4776 -6.4312 25 7 1.4674 -4.2003 -7.3175 26 14 -0.9822 -3.0600 -6.7050 27 1 -1.0853 -1.7825 -7.4551 28 1 -1.6291 -4.1455 -7.4849 29 1 -1.6629 -2.9198 -5.3927 30 1 -0.3634 0.4207 0.9376 31 1 -0.3634 0.6016 -0.8331 32 1 -0.3634 -1.0224 -0.1045 33 1 1.6050 -1.7247 1.2920 34 1 1.7638 -0.1656 2.1371 35 1 3.6343 1.2283 0.7127 36 1 8.1927 1.4531 0.0167 37 1 9.2717 1.3014 1.4238 38 1 7.9357 0.1467 1.1980 39 1 7.0995 4.2013 2.2780 40 1 8.7834 3.6689 2.0545 41 1 7.7042 3.8215 0.6476 42 1 7.0869 0.6808 3.4864 43 1 8.4229 1.8347 3.7123 44 1 6.7391 2.3677 3.9353 45 1 5.0449 -1.7625 -0.0989 46 1 3.5037 -2.6488 -0.0020 47 1 3.6575 -1.5682 -2.1941 48 1 3.9920 0.0065 -1.4288 49 1 2.5442 -2.1533 -3.1971 50 1 -0.1212 -2.7719 -3.8965 51 1 0.3547 -1.2884 -4.7573 52 1 1.0117 -4.5167 -8.1131 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000787358931.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:34:34 Heat of formation + Delta-G solvation = -118.509712 kcal Electronic energy + Delta-G solvation = -31510.952888 eV Core-core repulsion = 27317.425752 eV Total energy + Delta-G solvation = -4193.527136 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 341.215 amu Computer time = 1.39 seconds Orbital eigenvalues (eV) -42.09103 -41.44310 -39.42798 -37.75858 -36.39949 -35.56144 -34.88036 -34.63291 -33.26499 -32.06602 -29.76180 -28.33009 -28.29775 -28.25664 -25.74333 -24.41679 -23.98805 -22.87667 -21.71993 -21.13060 -20.47981 -19.25261 -19.18076 -18.23561 -17.56785 -17.38290 -17.17004 -16.91812 -16.34256 -16.00441 -15.74692 -15.61618 -15.38882 -15.29687 -14.92026 -14.77119 -14.67861 -14.44500 -14.29645 -14.03699 -13.46596 -13.31729 -13.25760 -13.14977 -13.00470 -12.89541 -12.84642 -12.81512 -12.66485 -12.59387 -12.49256 -12.24782 -12.09054 -12.02356 -11.90180 -11.76550 -11.61368 -11.33296 -11.05002 -10.90557 -10.28251 -10.22489 -9.94922 -9.38198 -8.39027 -6.45849 1.21043 1.33979 1.35796 1.49321 1.75436 1.82484 2.23730 2.29411 2.96653 3.08333 3.17966 3.62390 3.70263 3.79760 3.84970 3.88842 3.99438 4.00829 4.16548 4.28168 4.33845 4.56952 4.57367 4.65983 4.70649 4.75748 4.77956 4.81298 4.82904 4.86826 4.91420 4.92237 4.94569 4.97376 5.06065 5.08254 5.15582 5.25920 5.27458 5.32864 5.33254 5.43449 5.44710 5.60989 5.63506 5.81022 5.96379 6.20936 6.43418 6.55824 7.12315 7.21263 7.39208 7.71776 8.75812 Molecular weight = 341.21amu Principal moments of inertia in cm(-1) A = 0.017348 B = 0.002435 C = 0.002264 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1613.663221 B =11496.826852 C =12367.129425 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C 0.157 3.843 3 H 0.085 0.915 4 C -0.128 4.128 5 C 0.173 3.827 6 H 0.096 0.904 7 N -0.696 5.696 8 C 0.648 3.352 9 O -0.589 6.589 10 O -0.371 6.371 11 C 0.126 3.874 12 C -0.181 4.181 13 C -0.137 4.137 14 C -0.178 4.178 15 C -0.141 4.141 16 C 0.113 3.887 17 N -0.623 5.623 18 C 0.696 3.304 19 O -0.623 6.623 20 N -0.728 5.728 21 C 0.254 3.746 22 C -0.545 4.545 23 H 0.055 0.945 24 C 0.026 3.974 25 N -0.932 5.932 26 Si 0.940 3.060 27 H -0.265 1.265 28 H -0.274 1.274 29 H -0.259 1.259 30 H 0.070 0.930 31 H 0.051 0.949 32 H 0.040 0.960 33 H 0.086 0.914 34 H 0.109 0.891 35 H 0.411 0.589 36 H 0.058 0.942 37 H 0.088 0.912 38 H 0.064 0.936 39 H 0.070 0.930 40 H 0.100 0.900 41 H 0.066 0.934 42 H 0.064 0.936 43 H 0.087 0.913 44 H 0.062 0.938 45 H 0.080 0.920 46 H 0.082 0.918 47 H 0.075 0.925 48 H 0.077 0.923 49 H 0.398 0.602 50 H 0.010 0.990 51 H 0.009 0.991 52 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.292 14.969 23.864 30.349 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C 0.054 3.946 3 H 0.103 0.897 4 C -0.167 4.167 5 C 0.070 3.930 6 H 0.114 0.886 7 N -0.356 5.356 8 C 0.401 3.599 9 O -0.480 6.480 10 O -0.286 6.286 11 C 0.090 3.910 12 C -0.238 4.238 13 C -0.194 4.194 14 C -0.235 4.235 15 C -0.181 4.181 16 C -0.009 4.009 17 N -0.361 5.361 18 C 0.398 3.602 19 O -0.505 6.505 20 N -0.384 5.384 21 C 0.129 3.871 22 C -0.583 4.583 23 H 0.073 0.927 24 C -0.174 4.174 25 N -0.571 5.571 26 Si 0.763 3.237 27 H -0.190 1.190 28 H -0.199 1.199 29 H -0.184 1.184 30 H 0.089 0.911 31 H 0.070 0.930 32 H 0.059 0.941 33 H 0.105 0.895 34 H 0.127 0.873 35 H 0.249 0.751 36 H 0.077 0.923 37 H 0.106 0.894 38 H 0.083 0.917 39 H 0.089 0.911 40 H 0.119 0.881 41 H 0.085 0.915 42 H 0.083 0.917 43 H 0.106 0.894 44 H 0.081 0.919 45 H 0.098 0.902 46 H 0.100 0.900 47 H 0.093 0.907 48 H 0.095 0.905 49 H 0.236 0.764 50 H 0.028 0.972 51 H 0.026 0.974 52 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 10.823 14.696 23.951 30.113 hybrid contribution -0.364 -0.244 -1.008 1.099 sum 10.459 14.452 22.943 29.063 Atomic orbital electron populations 1.21975 0.93307 1.02214 1.00922 1.21214 0.95328 0.95238 0.82788 0.89728 1.22294 0.92820 1.03327 0.98210 1.20860 0.92751 0.80726 0.98695 0.88563 1.44894 1.11504 1.13069 1.66148 1.18254 0.82856 0.81550 0.77196 1.90897 1.61619 1.44387 1.51061 1.86317 1.32837 1.30409 1.79059 1.22359 0.76220 0.98027 0.94378 1.22477 1.00426 1.00863 1.00017 1.21887 1.02848 0.91214 1.03484 1.22458 1.03935 1.03067 0.94055 1.22293 1.02042 0.99627 0.94133 1.21659 0.79550 1.00988 0.98748 1.47366 1.06413 1.61475 1.20896 1.16201 0.84792 0.79081 0.80151 1.90898 1.17110 1.63711 1.78770 1.45455 1.15576 1.55323 1.22029 1.18898 0.89812 0.94079 0.84284 1.21272 0.98590 1.33434 1.04998 0.92675 1.25599 1.02683 0.94034 0.95106 1.69983 1.38934 1.36647 1.11538 0.85827 0.79945 0.78710 0.79212 1.18967 1.19893 1.18365 0.91133 0.92964 0.94124 0.89542 0.87308 0.75141 0.92325 0.89358 0.91677 0.91108 0.88150 0.91534 0.91694 0.89392 0.91874 0.90178 0.89981 0.90660 0.90484 0.76434 0.97215 0.97353 0.91868 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.25 7.61 71.98 0.55 -2.70 16 2 C 0.16 3.27 3.19 44.97 0.14 3.41 16 3 H 0.08 1.43 6.64 -2.39 -0.02 1.41 16 4 C -0.13 -1.93 5.07 30.67 0.16 -1.78 16 5 C 0.17 2.80 2.78 45.02 0.13 2.93 16 6 H 0.10 1.64 7.58 -2.39 -0.02 1.62 16 7 N -0.70 -11.18 4.27 -569.99 -2.43 -13.61 16 8 C 0.65 13.16 8.02 129.79 1.04 14.21 16 9 O -0.59 -14.50 11.54 19.81 0.23 -14.27 16 10 O -0.37 -7.03 9.94 -55.40 -0.55 -7.58 16 11 C 0.13 1.93 1.13 -10.80 -0.01 1.92 16 12 C -0.18 -2.89 8.37 71.98 0.60 -2.29 16 13 C -0.14 -1.37 8.85 71.98 0.64 -0.73 16 14 C -0.18 -2.59 8.37 71.98 0.60 -1.98 16 15 C -0.14 -2.69 5.77 30.67 0.18 -2.51 16 16 C 0.11 2.54 6.17 86.36 0.53 3.07 16 17 N -0.62 -16.84 2.97 -812.90 -2.42 -19.26 16 18 C 0.70 26.44 8.11 179.05 1.45 27.89 16 19 O -0.62 -27.41 11.93 -4.00 -0.05 -27.46 16 20 N -0.73 -30.12 5.44 -482.30 -2.62 -32.75 16 21 C 0.25 12.65 4.50 85.63 0.39 13.03 16 22 C -0.54 -30.48 9.83 25.60 0.25 -30.23 16 23 H 0.06 3.25 7.84 -2.91 -0.02 3.23 16 24 C 0.03 1.48 5.47 84.65 0.46 1.94 16 25 N -0.93 -56.08 13.96 21.45 0.30 -55.78 16 26 Si 0.94 44.42 27.47 68.60 1.88 46.30 16 27 H -0.26 -12.08 7.11 99.48 0.71 -11.38 16 28 H -0.27 -12.42 7.11 99.48 0.71 -11.71 16 29 H -0.26 -12.17 6.54 99.48 0.65 -11.52 16 30 H 0.07 1.32 8.14 -2.38 -0.02 1.30 16 31 H 0.05 1.66 6.57 -2.39 -0.02 1.65 16 32 H 0.04 1.27 6.94 -2.38 -0.02 1.25 16 33 H 0.09 1.45 8.14 -2.39 -0.02 1.43 16 34 H 0.11 1.15 8.14 -2.39 -0.02 1.13 16 35 H 0.41 5.58 6.98 -92.71 -0.65 4.93 16 36 H 0.06 0.94 8.14 -2.39 -0.02 0.92 16 37 H 0.09 1.03 8.14 -2.39 -0.02 1.02 16 38 H 0.06 1.38 5.88 -2.39 -0.01 1.37 16 39 H 0.07 0.66 8.14 -2.39 -0.02 0.64 16 40 H 0.10 0.59 8.14 -2.39 -0.02 0.57 16 41 H 0.07 0.69 8.14 -2.39 -0.02 0.67 16 42 H 0.06 1.28 5.88 -2.39 -0.01 1.27 16 43 H 0.09 0.92 8.14 -2.39 -0.02 0.90 16 44 H 0.06 0.85 8.14 -2.39 -0.02 0.83 16 45 H 0.08 1.60 8.14 -2.39 -0.02 1.58 16 46 H 0.08 1.61 8.14 -2.39 -0.02 1.59 16 47 H 0.08 1.86 5.59 -2.39 -0.01 1.84 16 48 H 0.08 1.57 7.74 -2.38 -0.02 1.56 16 49 H 0.40 14.95 5.82 -92.72 -0.54 14.41 16 50 H 0.01 0.52 7.20 -2.39 -0.02 0.50 16 51 H 0.01 0.44 7.57 -2.39 -0.02 0.42 16 52 H 0.27 15.24 8.31 -92.72 -0.77 14.47 16 Total: -1.00 -71.43 395.76 1.14 -70.29 By element: Atomic # 1 Polarization: 28.22 SS G_CDS: -0.31 Total: 27.91 kcal Atomic # 6 Polarization: 19.09 SS G_CDS: 7.11 Total: 26.19 kcal Atomic # 7 Polarization: -114.22 SS G_CDS: -7.17 Total: -121.40 kcal Atomic # 8 Polarization: -48.93 SS G_CDS: -0.37 Total: -49.30 kcal Atomic # 14 Polarization: 44.42 SS G_CDS: 1.88 Total: 46.30 kcal Total: -71.43 1.14 -70.29 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000787358931.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -48.217 kcal (2) G-P(sol) polarization free energy of solvation -71.430 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -119.647 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.137 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.293 kcal (6) G-S(sol) free energy of system = (1) + (5) -118.510 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.39 seconds