Wall clock time and date at job start Wed Apr 1 2020 00:34:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09004 * 109.70398 * 2 1 4 4 C 1.53200 * 109.58208 * 120.35153 * 2 1 3 5 5 C 1.53038 * 109.31026 * 174.42078 * 4 2 1 6 6 H 1.09003 * 109.46282 * 58.64656 * 5 4 2 7 7 N 1.46505 * 109.45937 * 178.61179 * 5 4 2 8 8 C 1.34775 * 119.99944 * 205.00188 * 7 5 4 9 9 O 1.21511 * 119.99912 * 359.97438 * 8 7 5 10 10 O 1.34634 * 119.99767 * 180.02562 * 8 7 5 11 11 C 1.45199 * 117.00135 * 179.97438 * 10 8 7 12 12 C 1.53002 * 109.46989 * 59.99802 * 11 10 8 13 13 C 1.53004 * 109.47493 * 179.97438 * 11 10 8 14 14 C 1.52998 * 109.47397 * 299.99785 * 11 10 8 15 15 C 1.53030 * 109.54025 * 298.63485 * 5 4 2 16 16 C 1.52766 * 109.38324 * 61.24219 * 15 5 4 17 17 N 1.46924 * 109.58733 * 239.63811 * 2 1 3 18 18 C 1.34777 * 120.63021 * 6.58548 * 17 2 1 19 19 O 1.21582 * 119.99889 * 5.65052 * 18 17 2 20 20 N 1.34773 * 119.99704 * 185.64879 * 18 17 2 21 21 C 1.46503 * 119.99725 * 174.92989 * 20 18 17 22 22 C 1.50699 * 109.47114 * 180.02562 * 21 20 18 23 23 H 1.08002 * 120.00063 * 0.02562 * 22 21 20 24 24 C 1.37874 * 120.00125 * 179.97438 * 22 21 20 25 25 N 1.31512 * 119.99980 * 0.02562 * 24 22 21 26 26 Si 1.86793 * 120.00203 * 179.97438 * 24 22 21 27 27 H 1.48508 * 109.47345 * 270.00138 * 26 24 22 28 28 H 1.48507 * 109.47304 * 150.00192 * 26 24 22 29 29 H 1.48497 * 109.47213 * 30.00072 * 26 24 22 30 30 H 1.08992 * 109.47312 * 172.87616 * 1 2 3 31 31 H 1.09001 * 109.47064 * 292.88176 * 1 2 3 32 32 H 1.08997 * 109.46527 * 52.87341 * 1 2 3 33 33 H 1.09002 * 109.49507 * 294.37280 * 4 2 1 34 34 H 1.08996 * 109.49735 * 54.46720 * 4 2 1 35 35 H 0.97001 * 119.99246 * 25.00410 * 7 5 4 36 36 H 1.09003 * 109.47309 * 60.00030 * 12 11 10 37 37 H 1.09004 * 109.46943 * 180.02562 * 12 11 10 38 38 H 1.09007 * 109.46933 * 299.99955 * 12 11 10 39 39 H 1.09001 * 109.47071 * 59.99908 * 13 11 10 40 40 H 1.08990 * 109.47299 * 180.02562 * 13 11 10 41 41 H 1.09000 * 109.46834 * 300.00595 * 13 11 10 42 42 H 1.08999 * 109.47046 * 59.99378 * 14 11 10 43 43 H 1.08990 * 109.47446 * 179.97438 * 14 11 10 44 44 H 1.09007 * 109.46825 * 300.00281 * 14 11 10 45 45 H 1.09003 * 109.50328 * 181.31334 * 15 5 4 46 46 H 1.09000 * 109.50104 * 301.41812 * 15 5 4 47 47 H 1.09003 * 109.50947 * 185.71182 * 16 15 5 48 48 H 1.08998 * 109.43482 * 65.42467 * 16 15 5 49 49 H 0.97000 * 120.00075 * 354.93142 * 20 18 17 50 50 H 1.09000 * 109.47156 * 60.00073 * 21 20 18 51 51 H 1.08996 * 109.47404 * 300.00089 * 21 20 18 52 52 H 0.97001 * 120.00113 * 0.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8976 1.0262 0.0000 4 6 2.0435 -0.7294 1.2456 5 6 3.5674 -0.8480 1.1703 6 1 4.0061 0.1473 1.0993 7 7 4.0651 -1.5157 2.3757 8 6 5.3293 -1.3021 2.7911 9 8 6.0564 -0.5561 2.1656 10 8 5.7868 -1.9160 3.8985 11 6 7.1584 -1.6398 4.2866 12 6 7.3219 -0.1415 4.5498 13 6 7.4958 -2.4204 5.5585 14 6 8.1027 -2.0658 3.1606 15 6 3.9569 -1.6658 -0.0631 16 6 3.4645 -0.9520 -1.3208 17 7 2.0226 -0.6997 -1.1944 18 6 1.1674 -1.1071 -2.1531 19 8 -0.0090 -0.8077 -2.0855 20 7 1.6164 -1.8464 -3.1866 21 6 0.6709 -2.3829 -4.1687 22 6 1.4225 -3.1670 -5.2134 23 1 2.4970 -3.2571 -5.1517 24 6 0.7384 -3.7702 -6.2473 25 7 -0.5700 -3.6609 -6.3222 26 14 1.6701 -4.7415 -7.5426 27 1 2.0570 -3.8379 -8.6558 28 1 0.8031 -5.8279 -8.0655 29 1 2.8909 -5.3308 -6.9364 30 1 -0.3633 -1.0196 -0.1274 31 1 -0.3633 0.3996 0.9468 32 1 -0.3632 0.6203 -0.8194 33 1 1.7659 -0.1667 2.1369 34 1 1.6028 -1.7252 1.2915 35 1 3.4846 -2.1115 2.8747 36 1 6.6492 0.1621 5.3520 37 1 8.3518 0.0660 4.8407 38 1 7.0815 0.4150 3.6439 39 1 7.3792 -3.4878 5.3713 40 1 8.5252 -2.2126 5.8500 41 1 6.8230 -2.1165 6.3604 42 1 7.8622 -1.5094 2.2547 43 1 9.1322 -1.8579 3.4517 44 1 7.9861 -3.1332 2.9731 45 1 5.0412 -1.7697 -0.1034 46 1 3.4982 -2.6529 -0.0049 47 1 3.6504 -1.5800 -2.1922 48 1 3.9929 -0.0051 -1.4308 49 1 2.5655 -2.0234 -3.2802 50 1 0.1366 -1.5610 -4.6453 51 1 -0.0421 -3.0371 -3.6671 52 1 -1.0538 -3.1556 -5.6502 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000787358933.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:34:51 Heat of formation + Delta-G solvation = -129.775120 kcal Electronic energy + Delta-G solvation = -31041.819253 eV Core-core repulsion = 26847.803612 eV Total energy + Delta-G solvation = -4194.015641 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 341.215 amu Computer time = 1.61 seconds Orbital eigenvalues (eV) -42.01460 -41.54633 -39.36218 -37.88674 -36.62005 -35.83764 -34.98017 -34.79837 -33.17880 -32.07863 -28.94671 -28.33341 -28.27373 -28.13750 -25.70122 -24.90593 -23.84811 -22.85535 -21.94468 -21.21221 -20.71328 -19.58683 -19.08261 -18.38532 -17.68963 -17.35919 -17.12710 -16.70856 -16.42515 -15.90297 -15.70267 -15.62451 -15.46753 -15.36600 -14.97847 -14.80149 -14.65222 -14.46491 -14.23918 -13.87261 -13.54829 -13.36057 -13.29830 -13.16281 -13.03452 -12.97807 -12.86636 -12.84278 -12.75741 -12.56506 -12.52950 -12.28665 -12.10917 -12.03363 -11.89579 -11.76442 -11.35837 -11.09616 -10.92878 -10.75150 -10.38273 -10.23026 -10.02462 -9.48658 -8.78952 -6.53770 1.14629 1.55001 1.64744 1.67976 1.78024 1.82360 2.17354 2.54598 3.03705 3.08956 3.11289 3.55530 3.66987 3.77681 3.82818 3.90112 3.96976 3.97585 4.17718 4.26522 4.31051 4.45562 4.52122 4.60102 4.64317 4.73183 4.76114 4.77692 4.79336 4.81458 4.86373 4.87333 4.90507 4.95329 5.00764 5.03314 5.13965 5.24068 5.28768 5.31025 5.33824 5.40058 5.49005 5.58364 5.60094 5.75421 5.98581 6.11914 6.35549 6.41249 7.08460 7.30161 7.35746 7.66175 8.60571 Molecular weight = 341.21amu Principal moments of inertia in cm(-1) A = 0.014973 B = 0.002280 C = 0.002045 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1869.633028 B =12279.853038 C =13686.184863 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C 0.163 3.837 3 H 0.090 0.910 4 C -0.126 4.126 5 C 0.173 3.827 6 H 0.092 0.908 7 N -0.697 5.697 8 C 0.647 3.353 9 O -0.588 6.588 10 O -0.371 6.371 11 C 0.126 3.874 12 C -0.179 4.179 13 C -0.137 4.137 14 C -0.181 4.181 15 C -0.137 4.137 16 C 0.114 3.886 17 N -0.626 5.626 18 C 0.693 3.307 19 O -0.627 6.627 20 N -0.725 5.725 21 C 0.275 3.725 22 C -0.627 4.627 23 H 0.072 0.928 24 C -0.032 4.032 25 N -0.929 5.929 26 Si 1.131 2.869 27 H -0.271 1.271 28 H -0.284 1.284 29 H -0.262 1.262 30 H 0.037 0.963 31 H 0.072 0.928 32 H 0.048 0.952 33 H 0.109 0.891 34 H 0.072 0.928 35 H 0.415 0.585 36 H 0.062 0.938 37 H 0.088 0.912 38 H 0.063 0.937 39 H 0.067 0.933 40 H 0.100 0.900 41 H 0.070 0.930 42 H 0.063 0.937 43 H 0.088 0.912 44 H 0.059 0.941 45 H 0.083 0.917 46 H 0.065 0.935 47 H 0.080 0.920 48 H 0.089 0.911 49 H 0.400 0.600 50 H -0.019 1.019 51 H -0.019 1.019 52 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.508 5.010 26.145 32.423 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C 0.060 3.940 3 H 0.108 0.892 4 C -0.165 4.165 5 C 0.070 3.930 6 H 0.110 0.890 7 N -0.356 5.356 8 C 0.401 3.599 9 O -0.479 6.479 10 O -0.285 6.285 11 C 0.089 3.911 12 C -0.236 4.236 13 C -0.194 4.194 14 C -0.238 4.238 15 C -0.177 4.177 16 C -0.010 4.010 17 N -0.364 5.364 18 C 0.395 3.605 19 O -0.509 6.509 20 N -0.382 5.382 21 C 0.151 3.849 22 C -0.665 4.665 23 H 0.090 0.910 24 C -0.231 4.231 25 N -0.565 5.565 26 Si 0.951 3.049 27 H -0.196 1.196 28 H -0.210 1.210 29 H -0.186 1.186 30 H 0.056 0.944 31 H 0.091 0.909 32 H 0.067 0.933 33 H 0.128 0.872 34 H 0.091 0.909 35 H 0.252 0.748 36 H 0.081 0.919 37 H 0.107 0.893 38 H 0.082 0.918 39 H 0.086 0.914 40 H 0.119 0.881 41 H 0.089 0.911 42 H 0.082 0.918 43 H 0.107 0.893 44 H 0.078 0.922 45 H 0.101 0.899 46 H 0.084 0.916 47 H 0.098 0.902 48 H 0.107 0.893 49 H 0.237 0.763 50 H -0.001 1.001 51 H -0.001 1.001 52 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges 17.898 4.685 24.598 30.779 hybrid contribution -0.206 0.596 1.205 1.360 sum 17.692 5.281 25.803 31.729 Atomic orbital electron populations 1.21951 0.93429 1.02045 1.00800 1.21179 0.95121 0.95549 0.82178 0.89228 1.22240 0.93045 1.02656 0.98537 1.20822 0.93866 0.96483 0.81863 0.88964 1.44774 1.10718 1.50800 1.29275 1.18258 0.83168 0.78875 0.79638 1.90902 1.56923 1.41265 1.58810 1.86315 1.33708 1.66744 1.41763 1.22384 0.76032 0.96653 0.95985 1.22470 1.03839 0.94457 1.02852 1.21887 1.03446 1.00214 0.93830 1.22477 1.00310 1.01783 0.99210 1.22190 1.01985 0.99570 0.93930 1.21634 0.79334 1.01506 0.98498 1.47437 1.06776 1.61578 1.20633 1.16282 0.84826 0.78958 0.80468 1.90902 1.17703 1.63169 1.79144 1.45471 1.11248 1.54831 1.26611 1.18489 0.88791 0.91361 0.86289 1.22415 0.96003 1.36344 1.11744 0.91002 1.27614 0.96367 0.97500 1.01602 1.70868 1.08536 1.40210 1.36870 0.82769 0.74106 0.75077 0.72961 1.19647 1.20967 1.18593 0.94365 0.90910 0.93333 0.87231 0.90916 0.74815 0.91896 0.89310 0.91776 0.91397 0.88099 0.91135 0.91764 0.89275 0.92213 0.89886 0.91581 0.90158 0.89314 0.76273 1.00107 1.00099 0.93614 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -3.59 7.61 71.98 0.55 -3.04 16 2 C 0.16 3.85 3.50 44.98 0.16 4.01 16 3 H 0.09 1.81 8.14 -2.39 -0.02 1.79 16 4 C -0.13 -2.11 4.84 30.67 0.15 -1.96 16 5 C 0.17 2.97 2.42 45.01 0.11 3.08 16 6 H 0.09 1.71 7.58 -2.39 -0.02 1.69 16 7 N -0.70 -11.22 5.08 -570.01 -2.90 -14.11 16 8 C 0.65 13.12 8.02 129.79 1.04 14.16 16 9 O -0.59 -14.53 11.54 19.81 0.23 -14.30 16 10 O -0.37 -6.80 9.94 -55.43 -0.55 -7.35 16 11 C 0.13 1.84 1.13 -10.79 -0.01 1.83 16 12 C -0.18 -2.55 8.37 71.98 0.60 -1.95 16 13 C -0.14 -1.23 8.85 71.98 0.64 -0.59 16 14 C -0.18 -2.74 8.37 71.98 0.60 -2.14 16 15 C -0.14 -2.71 5.63 30.53 0.17 -2.53 16 16 C 0.11 2.60 6.41 86.22 0.55 3.16 16 17 N -0.63 -18.46 2.98 -813.70 -2.42 -20.88 16 18 C 0.69 28.73 8.10 179.06 1.45 30.18 16 19 O -0.63 -30.59 11.92 -3.97 -0.05 -30.63 16 20 N -0.73 -32.10 5.46 -482.31 -2.63 -34.73 16 21 C 0.27 15.25 4.74 85.63 0.41 15.66 16 22 C -0.63 -34.98 9.28 25.60 0.24 -34.74 16 23 H 0.07 3.70 7.60 -2.91 -0.02 3.68 16 24 C -0.03 -1.84 5.46 84.65 0.46 -1.37 16 25 N -0.93 -57.99 13.65 21.45 0.29 -57.70 16 26 Si 1.13 48.54 29.90 68.60 2.05 50.60 16 27 H -0.27 -10.94 7.11 99.48 0.71 -10.23 16 28 H -0.28 -12.21 7.11 99.48 0.71 -11.50 16 29 H -0.26 -10.05 7.11 99.48 0.71 -9.34 16 30 H 0.04 1.33 6.83 -2.39 -0.02 1.32 16 31 H 0.07 1.55 8.14 -2.39 -0.02 1.53 16 32 H 0.05 1.71 6.67 -2.39 -0.02 1.69 16 33 H 0.11 1.31 8.14 -2.39 -0.02 1.29 16 34 H 0.07 1.33 8.14 -2.39 -0.02 1.31 16 35 H 0.42 5.09 8.71 -92.71 -0.81 4.28 16 36 H 0.06 0.83 8.14 -2.39 -0.02 0.81 16 37 H 0.09 0.90 8.14 -2.39 -0.02 0.88 16 38 H 0.06 1.26 5.88 -2.38 -0.01 1.25 16 39 H 0.07 0.62 8.14 -2.39 -0.02 0.60 16 40 H 0.10 0.50 8.14 -2.39 -0.02 0.48 16 41 H 0.07 0.59 8.14 -2.39 -0.02 0.57 16 42 H 0.06 1.32 5.88 -2.39 -0.01 1.31 16 43 H 0.09 0.97 8.14 -2.39 -0.02 0.95 16 44 H 0.06 0.89 8.14 -2.38 -0.02 0.87 16 45 H 0.08 1.66 8.14 -2.39 -0.02 1.64 16 46 H 0.07 1.41 8.14 -2.39 -0.02 1.39 16 47 H 0.08 1.94 5.56 -2.39 -0.01 1.93 16 48 H 0.09 1.75 8.14 -2.39 -0.02 1.73 16 49 H 0.40 15.28 5.78 -92.71 -0.54 14.74 16 50 H -0.02 -1.17 8.01 -2.39 -0.02 -1.19 16 51 H -0.02 -1.15 8.01 -2.39 -0.02 -1.17 16 52 H 0.25 16.50 7.22 -92.71 -0.67 15.83 16 Total: -1.00 -76.04 402.23 0.82 -75.22 By element: Atomic # 1 Polarization: 30.46 SS G_CDS: -0.32 Total: 30.14 kcal Atomic # 6 Polarization: 16.63 SS G_CDS: 7.11 Total: 23.74 kcal Atomic # 7 Polarization: -119.76 SS G_CDS: -7.66 Total: -127.42 kcal Atomic # 8 Polarization: -51.92 SS G_CDS: -0.37 Total: -52.29 kcal Atomic # 14 Polarization: 48.54 SS G_CDS: 2.05 Total: 50.60 kcal Total: -76.04 0.82 -75.22 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000787358933.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -54.550 kcal (2) G-P(sol) polarization free energy of solvation -76.043 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -130.593 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.818 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.225 kcal (6) G-S(sol) free energy of system = (1) + (5) -129.775 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.61 seconds