Wall clock time and date at job start Wed Apr 1 2020 00:35:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09002 * 109.70174 * 2 1 4 4 C 1.53189 * 109.59061 * 239.65157 * 2 1 3 5 5 C 1.53036 * 109.31650 * 185.57461 * 4 2 1 6 6 H 1.08997 * 109.46139 * 301.34299 * 5 4 2 7 7 N 1.46503 * 109.45252 * 181.37532 * 5 4 2 8 8 C 1.34775 * 120.00370 * 154.96662 * 7 5 4 9 9 O 1.21517 * 119.99319 * 0.02562 * 8 7 5 10 10 O 1.34630 * 119.99952 * 180.02562 * 8 7 5 11 11 C 1.45206 * 116.99579 * 179.97438 * 10 8 7 12 12 C 1.52995 * 109.46997 * 60.00409 * 11 10 8 13 13 C 1.53001 * 109.46868 * 180.02562 * 11 10 8 14 14 C 1.52997 * 109.47150 * 300.00183 * 11 10 8 15 15 C 1.53043 * 109.53678 * 61.36485 * 5 4 2 16 16 C 1.53188 * 109.31074 * 298.63701 * 15 5 4 17 17 N 1.46918 * 109.58834 * 120.35861 * 2 1 3 18 18 C 1.34778 * 120.63207 * 353.42183 * 17 2 1 19 19 O 1.21587 * 119.99390 * 354.06045 * 18 17 2 20 20 N 1.34779 * 120.00163 * 174.06810 * 18 17 2 21 21 C 1.46499 * 119.99810 * 185.10104 * 20 18 17 22 22 C 1.50694 * 109.47230 * 179.97438 * 21 20 18 23 23 H 1.08001 * 119.99973 * 359.97438 * 22 21 20 24 24 C 1.37875 * 120.00373 * 179.97438 * 22 21 20 25 25 N 1.31513 * 119.99746 * 0.02562 * 24 22 21 26 26 Si 1.86802 * 120.00359 * 179.97438 * 24 22 21 27 27 H 1.48504 * 109.46875 * 90.00039 * 26 24 22 28 28 H 1.48496 * 109.47495 * 210.00299 * 26 24 22 29 29 H 1.48508 * 109.46954 * 330.00555 * 26 24 22 30 30 H 1.08998 * 109.47259 * 305.57385 * 1 2 3 31 31 H 1.09006 * 109.47195 * 65.57731 * 1 2 3 32 32 H 1.09004 * 109.47236 * 185.57215 * 1 2 3 33 33 H 1.09006 * 109.49903 * 65.62129 * 4 2 1 34 34 H 1.08999 * 109.49494 * 305.53219 * 4 2 1 35 35 H 0.97004 * 119.99441 * 334.97169 * 7 5 4 36 36 H 1.09005 * 109.47061 * 60.00021 * 12 11 10 37 37 H 1.09008 * 109.46920 * 179.97438 * 12 11 10 38 38 H 1.08996 * 109.47512 * 299.99792 * 12 11 10 39 39 H 1.08999 * 109.47428 * 59.99879 * 13 11 10 40 40 H 1.09002 * 109.47515 * 180.02562 * 13 11 10 41 41 H 1.09005 * 109.47301 * 300.00047 * 13 11 10 42 42 H 1.08990 * 109.47213 * 60.00184 * 14 11 10 43 43 H 1.09008 * 109.46926 * 180.02562 * 14 11 10 44 44 H 1.08998 * 109.47557 * 300.00003 * 14 11 10 45 45 H 1.09006 * 109.49982 * 58.58276 * 15 5 4 46 46 H 1.08999 * 109.49813 * 178.68379 * 15 5 4 47 47 H 1.09006 * 109.58763 * 174.42608 * 16 15 5 48 48 H 1.09000 * 109.58635 * 294.84269 * 16 15 5 49 49 H 0.96995 * 119.99999 * 5.09810 * 20 18 17 50 50 H 1.08996 * 109.47173 * 299.99855 * 21 20 18 51 51 H 1.09001 * 109.47302 * 59.99543 * 21 20 18 52 52 H 0.97005 * 119.99769 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8974 1.0262 0.0000 4 6 2.0436 -0.7292 -1.2454 5 6 3.5675 -0.8477 -1.1702 6 1 4.0061 0.1476 -1.0993 7 7 4.0650 -1.5156 -2.3755 8 6 5.3290 -1.3016 -2.7916 9 8 6.0560 -0.5550 -2.1666 10 8 5.7859 -1.9149 -3.8995 11 6 7.1570 -1.6372 -4.2887 12 6 8.1026 -2.0626 -3.1637 13 6 7.4939 -2.4173 -5.5611 14 6 7.3189 -0.1388 -4.5519 15 6 3.9570 -1.6656 0.0633 16 6 3.4650 -0.9470 1.3236 17 7 2.0225 -0.6996 1.1944 18 6 1.1674 -1.1071 2.1531 19 8 -0.0082 -0.8034 2.0881 20 7 1.6153 -1.8512 3.1837 21 6 0.6693 -2.3880 4.1651 22 6 1.4197 -3.1778 5.2063 23 1 2.4938 -3.2709 5.1431 24 6 0.7350 -3.7815 6.2396 25 7 -0.5730 -3.6685 6.3164 26 14 1.6651 -4.7611 7.5299 27 1 2.0580 -3.8628 8.6453 28 1 0.7947 -5.8455 8.0509 29 1 2.8823 -5.3536 6.9193 30 1 -0.3634 0.5978 0.8358 31 1 -0.3634 0.4249 -0.9358 32 1 -0.3634 -1.0228 0.0998 33 1 1.7660 -0.1666 -2.1369 34 1 1.6030 -1.7251 -1.2915 35 1 3.4846 -2.1118 -2.8742 36 1 7.9872 -3.1302 -2.9763 37 1 9.1319 -1.8545 -3.4561 38 1 7.8625 -1.5066 -2.2575 39 1 6.8201 -2.1140 -6.3624 40 1 8.5232 -2.2093 -5.8531 41 1 7.3784 -3.4850 -5.3740 42 1 7.0788 0.4172 -3.6457 43 1 8.3481 0.0696 -4.8445 44 1 6.6452 0.1643 -5.3534 45 1 3.4983 -2.6528 0.0051 46 1 5.0413 -1.7694 0.1035 47 1 3.6519 -1.5718 2.1970 48 1 3.9903 0.0020 1.4317 49 1 2.5639 -2.0313 3.2756 50 1 0.1381 -1.5661 4.6450 51 1 -0.0463 -3.0385 3.6620 52 1 -1.0547 -4.0935 7.0432 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000787358935.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:35:05 Heat of formation + Delta-G solvation = -102.564221 kcal Electronic energy + Delta-G solvation = -30998.776857 eV Core-core repulsion = 26805.941169 eV Total energy + Delta-G solvation = -4192.835688 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 341.215 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -41.10040 -40.21179 -38.24177 -36.79812 -34.89087 -34.54679 -34.12063 -32.90009 -31.69406 -30.96757 -27.75512 -27.69596 -27.62126 -26.74043 -24.58044 -23.05912 -22.82975 -21.44005 -20.91688 -20.27402 -19.25317 -18.39198 -17.64591 -16.91806 -16.37369 -16.04642 -15.91193 -15.57420 -15.21158 -14.88686 -14.77164 -14.60034 -14.21179 -14.03060 -13.80242 -13.79759 -13.34208 -12.91447 -12.84278 -12.57598 -12.42735 -12.24511 -12.23026 -12.16407 -11.94852 -11.90248 -11.83730 -11.69875 -11.59146 -11.57812 -11.14531 -10.99327 -10.91846 -10.85946 -10.77100 -10.64705 -10.28254 -10.24042 -9.39688 -9.33768 -8.72188 -8.65645 -8.35904 -7.71509 -6.14528 -4.20838 1.90941 2.62505 3.13844 3.25327 3.31754 3.34276 3.80008 3.95496 4.31570 4.37579 4.42005 4.44351 4.56421 4.58290 4.74558 4.95055 4.95854 5.11958 5.17892 5.19220 5.19968 5.21658 5.29434 5.34560 5.40311 5.45373 5.52648 5.55007 5.59746 5.64178 5.68813 5.84128 5.85945 5.91976 5.96907 5.99037 6.06026 6.20405 6.28919 6.44433 6.64666 6.98905 7.14830 7.19478 7.53361 7.57550 7.58972 7.86685 8.03671 8.16360 8.77404 8.91875 9.34724 9.49563 10.95613 Molecular weight = 341.21amu Principal moments of inertia in cm(-1) A = 0.014967 B = 0.002274 C = 0.002041 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1870.364811 B =12310.271255 C =13715.383801 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C 0.170 3.830 3 H 0.067 0.933 4 C -0.140 4.140 5 C 0.165 3.835 6 H 0.093 0.907 7 N -0.706 5.706 8 C 0.650 3.350 9 O -0.567 6.567 10 O -0.367 6.367 11 C 0.137 3.863 12 C -0.184 4.184 13 C -0.141 4.141 14 C -0.183 4.183 15 C -0.146 4.146 16 C 0.117 3.883 17 N -0.638 5.638 18 C 0.697 3.303 19 O -0.590 6.590 20 N -0.731 5.731 21 C 0.267 3.733 22 C -0.541 4.541 23 H 0.061 0.939 24 C 0.063 3.937 25 N -0.885 5.885 26 Si 0.903 3.097 27 H -0.279 1.279 28 H -0.285 1.285 29 H -0.273 1.273 30 H 0.084 0.916 31 H 0.036 0.964 32 H 0.068 0.932 33 H 0.080 0.920 34 H 0.076 0.924 35 H 0.405 0.595 36 H 0.059 0.941 37 H 0.069 0.931 38 H 0.089 0.911 39 H 0.066 0.934 40 H 0.080 0.920 41 H 0.066 0.934 42 H 0.088 0.912 43 H 0.069 0.931 44 H 0.058 0.942 45 H 0.072 0.928 46 H 0.079 0.921 47 H 0.086 0.914 48 H 0.068 0.932 49 H 0.384 0.616 50 H 0.025 0.975 51 H 0.023 0.977 52 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.198 5.040 -23.888 28.758 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C 0.065 3.935 3 H 0.085 0.915 4 C -0.179 4.179 5 C 0.062 3.938 6 H 0.111 0.889 7 N -0.364 5.364 8 C 0.403 3.597 9 O -0.456 6.456 10 O -0.282 6.282 11 C 0.100 3.900 12 C -0.241 4.241 13 C -0.198 4.198 14 C -0.240 4.240 15 C -0.186 4.186 16 C -0.007 4.007 17 N -0.378 5.378 18 C 0.399 3.601 19 O -0.469 6.469 20 N -0.385 5.385 21 C 0.146 3.854 22 C -0.579 4.579 23 H 0.079 0.921 24 C -0.140 4.140 25 N -0.523 5.523 26 Si 0.730 3.270 27 H -0.205 1.205 28 H -0.210 1.210 29 H -0.198 1.198 30 H 0.103 0.897 31 H 0.054 0.946 32 H 0.087 0.913 33 H 0.099 0.901 34 H 0.095 0.905 35 H 0.240 0.760 36 H 0.078 0.922 37 H 0.088 0.912 38 H 0.107 0.893 39 H 0.085 0.915 40 H 0.099 0.901 41 H 0.085 0.915 42 H 0.107 0.893 43 H 0.088 0.912 44 H 0.078 0.922 45 H 0.091 0.909 46 H 0.097 0.903 47 H 0.104 0.896 48 H 0.086 0.914 49 H 0.219 0.781 50 H 0.043 0.957 51 H 0.041 0.959 52 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 14.564 5.529 -23.519 28.210 hybrid contribution 0.853 -1.036 0.529 1.443 sum 15.417 4.492 -22.990 28.043 Atomic orbital electron populations 1.22166 0.91954 1.04464 1.00513 1.20876 0.96254 0.94142 0.82188 0.91480 1.22378 0.93363 1.02826 0.99301 1.20985 0.94008 0.96733 0.82064 0.88875 1.44925 1.10998 1.50885 1.29624 1.18117 0.82992 0.79044 0.79514 1.90904 1.56256 1.40288 1.58169 1.86303 1.32660 1.66949 1.42270 1.22059 0.76938 0.96015 0.95007 1.22519 0.99100 1.02319 1.00168 1.21866 1.02138 1.00634 0.95188 1.22516 1.02577 0.94945 1.04008 1.22368 1.01983 0.99983 0.94243 1.21505 0.81291 1.00223 0.97703 1.47425 1.06053 1.62934 1.21395 1.16090 0.84683 0.79290 0.80027 1.90902 1.15851 1.61902 1.78240 1.45998 1.11494 1.53887 1.27127 1.18961 0.87894 0.93526 0.85042 1.21215 0.93849 1.33251 1.09629 0.92085 1.24938 0.94912 0.96307 0.97859 1.69979 1.06538 1.43559 1.32174 0.86429 0.79527 0.79599 0.81415 1.20477 1.21031 1.19803 0.89710 0.94566 0.91313 0.90140 0.90519 0.76034 0.92150 0.91177 0.89255 0.91505 0.90149 0.91455 0.89300 0.91176 0.92245 0.90887 0.90258 0.89557 0.91380 0.78107 0.95665 0.95891 0.92497 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.95 7.61 37.16 0.28 -1.67 16 2 C 0.17 2.15 3.49 -67.61 -0.24 1.92 16 3 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 4 C -0.14 -1.36 4.84 -26.61 -0.13 -1.49 16 5 C 0.17 1.62 2.42 -67.89 -0.16 1.46 16 6 H 0.09 1.00 7.58 -51.93 -0.39 0.61 16 7 N -0.71 -6.50 5.08 -58.69 -0.30 -6.80 16 8 C 0.65 7.14 8.02 54.05 0.43 7.58 16 9 O -0.57 -7.35 11.54 -19.29 -0.22 -7.57 16 10 O -0.37 -3.70 9.94 -40.30 -0.40 -4.10 16 11 C 0.14 1.14 1.13 -90.62 -0.10 1.03 16 12 C -0.18 -1.54 8.37 37.16 0.31 -1.23 16 13 C -0.14 -0.82 8.85 37.16 0.33 -0.49 16 14 C -0.18 -1.47 8.37 37.16 0.31 -1.16 16 15 C -0.15 -1.57 5.65 -26.61 -0.15 -1.72 16 16 C 0.12 1.43 6.43 -3.71 -0.02 1.40 16 17 N -0.64 -9.60 2.97 -170.91 -0.51 -10.10 16 18 C 0.70 14.07 8.10 -86.91 -0.70 13.37 16 19 O -0.59 -13.76 11.92 5.29 0.06 -13.70 16 20 N -0.73 -15.62 5.46 -66.42 -0.36 -15.98 16 21 C 0.27 7.10 5.43 -5.20 -0.03 7.07 16 22 C -0.54 -14.71 9.28 -34.44 -0.32 -15.02 16 23 H 0.06 1.56 7.60 -52.49 -0.40 1.16 16 24 C 0.06 1.76 5.46 -17.82 -0.10 1.66 16 25 N -0.89 -26.07 13.29 55.43 0.74 -25.33 16 26 Si 0.90 20.90 29.54 -169.99 -5.02 15.88 16 27 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 28 H -0.28 -6.56 7.11 56.52 0.40 -6.15 16 29 H -0.27 -6.15 7.11 56.52 0.40 -5.74 16 30 H 0.08 1.47 6.54 -51.93 -0.34 1.13 16 31 H 0.04 0.42 8.14 -51.93 -0.42 0.00 16 32 H 0.07 1.17 6.95 -51.93 -0.36 0.81 16 33 H 0.08 0.65 8.14 -51.93 -0.42 0.23 16 34 H 0.08 0.79 8.14 -51.93 -0.42 0.37 16 35 H 0.41 3.00 8.71 -40.82 -0.36 2.64 16 36 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 37 H 0.07 0.46 8.14 -51.92 -0.42 0.04 16 38 H 0.09 0.95 5.88 -51.93 -0.31 0.65 16 39 H 0.07 0.37 8.14 -51.93 -0.42 -0.05 16 40 H 0.08 0.33 8.14 -51.93 -0.42 -0.09 16 41 H 0.07 0.39 8.14 -51.93 -0.42 -0.04 16 42 H 0.09 0.92 5.88 -51.93 -0.31 0.61 16 43 H 0.07 0.44 8.14 -51.92 -0.42 0.02 16 44 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 45 H 0.07 0.84 8.14 -51.93 -0.42 0.41 16 46 H 0.08 0.86 8.14 -51.93 -0.42 0.44 16 47 H 0.09 1.08 5.56 -51.93 -0.29 0.79 16 48 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 49 H 0.38 7.19 5.78 -40.82 -0.24 6.96 16 50 H 0.03 0.75 8.14 -51.93 -0.42 0.32 16 51 H 0.02 0.67 8.14 -51.93 -0.42 0.25 16 52 H 0.27 7.33 8.31 -40.82 -0.34 6.99 16 LS Contribution 403.59 15.07 6.08 6.08 Total: -1.00 -32.66 403.59 -9.10 -41.76 By element: Atomic # 1 Polarization: 16.03 SS G_CDS: -8.88 Total: 7.15 kcal Atomic # 6 Polarization: 13.00 SS G_CDS: -0.29 Total: 12.71 kcal Atomic # 7 Polarization: -57.78 SS G_CDS: -0.43 Total: -58.22 kcal Atomic # 8 Polarization: -24.81 SS G_CDS: -0.56 Total: -25.37 kcal Atomic # 14 Polarization: 20.90 SS G_CDS: -5.02 Total: 15.88 kcal Total LS contribution 6.08 Total: 6.08 kcal Total: -32.66 -9.10 -41.76 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000787358935.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -60.805 kcal (2) G-P(sol) polarization free energy of solvation -32.657 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.462 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.102 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.759 kcal (6) G-S(sol) free energy of system = (1) + (5) -102.564 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds