Wall clock time and date at job start Wed Apr 1 2020 01:31:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08996 * 109.61122 * 2 1 4 4 C 1.53364 * 109.60981 * 239.65220 * 2 1 3 5 5 N 1.46969 * 108.63256 * 190.66318 * 4 2 1 6 6 C 1.34783 * 120.59376 * 235.19989 * 5 4 2 7 7 O 1.21587 * 119.99453 * 5.18792 * 6 5 4 8 8 N 1.34768 * 120.00080 * 185.18252 * 6 5 4 9 9 C 1.46500 * 119.99942 * 175.02143 * 8 6 5 10 10 C 1.50697 * 109.47308 * 180.02562 * 9 8 6 11 11 H 1.08007 * 119.99907 * 359.97438 * 10 9 8 12 12 C 1.37874 * 120.00506 * 180.02562 * 10 9 8 13 13 N 1.31513 * 120.00705 * 180.02562 * 12 10 9 14 14 Si 1.86801 * 119.99729 * 359.97438 * 12 10 9 15 15 H 1.48508 * 109.47327 * 270.00332 * 14 12 10 16 16 H 1.48501 * 109.47300 * 30.00284 * 14 12 10 17 17 H 1.48502 * 109.47328 * 150.00292 * 14 12 10 18 18 C 1.46964 * 118.81621 * 55.48087 * 5 4 2 19 19 C 1.53809 * 108.39468 * 304.48339 * 18 5 4 20 20 H 1.08997 * 109.88272 * 289.76472 * 19 18 5 21 21 C 1.53006 * 109.53211 * 169.29851 * 19 18 5 22 22 N 1.46968 * 108.58261 * 49.63873 * 19 18 5 23 23 C 1.34774 * 120.60146 * 124.62143 * 22 19 18 24 24 O 1.21502 * 120.00463 * 174.45693 * 23 22 19 25 25 O 1.34639 * 119.99462 * 354.46081 * 23 22 19 26 26 C 1.45200 * 116.99670 * 179.97438 * 25 23 22 27 27 C 1.52997 * 109.47106 * 60.00549 * 26 25 23 28 28 C 1.53001 * 109.47034 * 180.02562 * 26 25 23 29 29 C 1.53001 * 109.47480 * 299.99960 * 26 25 23 30 30 H 1.09004 * 109.46779 * 186.48490 * 1 2 3 31 31 H 1.09000 * 109.47035 * 306.48928 * 1 2 3 32 32 H 1.09000 * 109.46592 * 66.48711 * 1 2 3 33 33 H 1.08998 * 109.61337 * 70.91857 * 4 2 1 34 34 H 1.09006 * 109.75457 * 310.48833 * 4 2 1 35 35 H 0.96999 * 120.00161 * 355.01919 * 8 6 5 36 36 H 1.08995 * 109.47195 * 59.99822 * 9 8 6 37 37 H 1.09003 * 109.47018 * 299.99764 * 9 8 6 38 38 H 0.96998 * 120.00358 * 179.97438 * 13 12 10 39 39 H 1.09001 * 109.60512 * 64.26336 * 18 5 4 40 40 H 1.08997 * 109.61079 * 184.77615 * 18 5 4 41 41 H 1.08995 * 109.47161 * 299.22389 * 21 19 18 42 42 H 1.09003 * 109.46788 * 59.22415 * 21 19 18 43 43 H 1.09001 * 109.47101 * 179.22290 * 21 19 18 44 44 H 1.09004 * 109.47205 * 59.99407 * 27 26 25 45 45 H 1.09001 * 109.47378 * 179.97438 * 27 26 25 46 46 H 1.09005 * 109.46727 * 299.99692 * 27 26 25 47 47 H 1.09005 * 109.47216 * 60.00112 * 28 26 25 48 48 H 1.09001 * 109.47195 * 180.02562 * 28 26 25 49 49 H 1.09004 * 109.46971 * 300.00406 * 28 26 25 50 50 H 1.09005 * 109.46514 * 60.00331 * 29 26 25 51 51 H 1.09001 * 109.47047 * 179.97438 * 29 26 25 52 52 H 1.08992 * 109.47188 * 300.00421 * 29 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8959 1.0267 0.0000 4 6 2.0448 -0.7299 -1.2467 5 7 3.4916 -0.9437 -1.1019 6 6 4.3477 -0.5058 -2.0463 7 8 3.9360 0.1537 -2.9811 8 7 5.6599 -0.7987 -1.9543 9 6 6.5730 -0.4173 -3.0346 10 6 7.9722 -0.8572 -2.6885 11 1 8.1624 -1.3693 -1.7567 12 6 9.0098 -0.6050 -3.5607 13 7 10.2308 -0.9894 -3.2589 14 14 8.6811 0.2813 -5.1718 15 1 8.3637 -0.7131 -6.2281 16 1 7.5324 1.2070 -5.0022 17 1 9.8860 1.0547 -5.5661 18 6 3.9878 -1.6491 0.0881 19 6 3.4734 -0.9142 1.3376 20 1 3.9772 0.0473 1.4358 21 6 3.7449 -1.7655 2.5797 22 7 2.0266 -0.7005 1.1929 23 6 1.1704 -1.1393 2.1367 24 8 -0.0116 -0.8697 2.0574 25 8 1.6251 -1.8764 3.1676 26 6 0.6466 -2.3143 4.1469 27 6 -0.4119 -3.1787 3.4589 28 6 1.3450 -3.1323 5.2351 29 6 -0.0241 -1.0931 4.7791 30 1 -0.3633 -1.0211 0.1161 31 1 -0.3633 0.6111 0.8262 32 1 -0.3632 0.4100 -0.9424 33 1 1.8514 -0.1236 -2.1316 34 1 1.5409 -1.6916 -1.3449 35 1 5.9998 -1.2620 -1.1729 36 1 6.5531 0.6650 -3.1620 37 1 6.2602 -0.8981 -3.9615 38 1 10.9607 -0.8123 -3.8727 39 1 3.6187 -2.6747 0.0858 40 1 5.0777 -1.6499 0.0850 41 1 3.2198 -2.7164 2.4903 42 1 4.8158 -1.9486 2.6677 43 1 3.3925 -1.2377 3.4659 44 1 0.0661 -4.0487 3.0086 45 1 -1.1462 -3.5078 4.1941 46 1 -0.9094 -2.5955 2.6839 47 1 2.0990 -2.5162 5.7252 48 1 0.6104 -3.4614 5.9700 49 1 1.8233 -4.0023 4.7850 50 1 -0.5217 -0.5101 4.0040 51 1 -0.7590 -1.4219 5.5139 52 1 0.7299 -0.4774 5.2691 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000787359359.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:31:14 Heat of formation + Delta-G solvation = -68.952405 kcal Electronic energy + Delta-G solvation = -32233.055617 eV Core-core repulsion = 28041.677447 eV Total energy + Delta-G solvation = -4191.378170 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 341.215 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -41.47122 -39.93267 -38.33242 -36.86409 -35.02106 -34.41952 -33.85700 -33.23121 -32.25606 -29.62210 -28.16016 -27.68520 -27.61974 -26.87946 -25.84710 -23.53446 -22.14950 -21.93977 -20.99710 -19.97527 -19.37154 -18.19918 -17.23673 -16.98055 -16.42416 -16.32422 -16.11933 -15.75363 -15.21266 -14.95936 -14.72663 -14.47777 -14.17875 -14.06932 -13.81170 -13.57485 -13.33359 -13.11159 -12.98343 -12.81468 -12.56346 -12.44914 -12.42848 -12.18815 -12.17253 -12.04024 -11.90593 -11.71844 -11.62560 -11.49970 -11.35634 -11.19757 -10.98043 -10.83370 -10.76985 -10.37407 -9.97548 -9.62826 -9.48628 -9.47939 -9.23597 -8.79064 -8.43003 -7.97996 -6.22236 -4.24351 1.96846 2.69035 2.96360 3.27054 3.34224 3.42891 3.57428 3.67100 4.32467 4.37229 4.47038 4.50881 4.52589 4.67108 4.71831 4.79305 4.93385 4.96997 5.06750 5.13565 5.19588 5.25380 5.27251 5.32882 5.42314 5.46083 5.51576 5.55176 5.58221 5.60285 5.69290 5.74557 5.75826 5.82493 6.00852 6.03068 6.03680 6.08854 6.18158 6.30478 6.42169 6.54430 6.74181 7.09581 7.18502 7.27864 7.34552 7.46134 8.20755 8.22707 8.60836 8.76627 9.11771 9.38723 10.89621 Molecular weight = 341.21amu Principal moments of inertia in cm(-1) A = 0.021108 B = 0.002611 C = 0.002387 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1326.219281 B =10721.188355 C =11726.856102 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C 0.144 3.856 3 H 0.081 0.919 4 C 0.121 3.879 5 N -0.639 5.639 6 C 0.700 3.300 7 O -0.598 6.598 8 N -0.722 5.722 9 C 0.237 3.763 10 C -0.542 4.542 11 H 0.079 0.921 12 C 0.078 3.922 13 N -0.893 5.893 14 Si 0.877 3.123 15 H -0.273 1.273 16 H -0.260 1.260 17 H -0.284 1.284 18 C 0.103 3.897 19 C 0.125 3.875 20 H 0.084 0.916 21 C -0.154 4.154 22 N -0.589 5.589 23 C 0.649 3.351 24 O -0.564 6.564 25 O -0.340 6.340 26 C 0.116 3.884 27 C -0.180 4.180 28 C -0.139 4.139 29 C -0.180 4.180 30 H 0.070 0.930 31 H 0.079 0.921 32 H 0.051 0.949 33 H 0.107 0.893 34 H 0.066 0.934 35 H 0.391 0.609 36 H 0.024 0.976 37 H 0.018 0.982 38 H 0.268 0.732 39 H 0.073 0.927 40 H 0.096 0.904 41 H 0.079 0.921 42 H 0.073 0.927 43 H 0.081 0.919 44 H 0.057 0.943 45 H 0.064 0.936 46 H 0.087 0.913 47 H 0.065 0.935 48 H 0.075 0.925 49 H 0.065 0.935 50 H 0.086 0.914 51 H 0.065 0.935 52 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.011 -3.769 17.682 26.969 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C 0.042 3.958 3 H 0.099 0.901 4 C -0.003 4.003 5 N -0.377 5.377 6 C 0.401 3.599 7 O -0.477 6.477 8 N -0.376 5.376 9 C 0.115 3.885 10 C -0.580 4.580 11 H 0.097 0.903 12 C -0.126 4.126 13 N -0.530 5.530 14 Si 0.703 3.297 15 H -0.199 1.199 16 H -0.184 1.184 17 H -0.209 1.209 18 C -0.022 4.022 19 C 0.021 3.979 20 H 0.102 0.898 21 C -0.211 4.211 22 N -0.331 5.331 23 C 0.405 3.595 24 O -0.453 6.453 25 O -0.256 6.256 26 C 0.079 3.921 27 C -0.237 4.237 28 C -0.196 4.196 29 C -0.237 4.237 30 H 0.089 0.911 31 H 0.097 0.903 32 H 0.070 0.930 33 H 0.126 0.874 34 H 0.084 0.916 35 H 0.227 0.773 36 H 0.042 0.958 37 H 0.036 0.964 38 H 0.077 0.923 39 H 0.091 0.909 40 H 0.114 0.886 41 H 0.098 0.902 42 H 0.091 0.909 43 H 0.099 0.901 44 H 0.076 0.924 45 H 0.083 0.917 46 H 0.105 0.895 47 H 0.084 0.916 48 H 0.094 0.906 49 H 0.084 0.916 50 H 0.105 0.895 51 H 0.084 0.916 52 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -20.439 -3.247 16.913 26.727 hybrid contribution 0.244 0.103 -0.372 0.457 sum -20.195 -3.144 16.540 26.293 Atomic orbital electron populations 1.22166 0.91504 1.04167 1.01413 1.21748 0.96269 0.95475 0.82341 0.90081 1.21886 0.79501 1.00778 0.98180 1.47232 1.06244 1.62118 1.22145 1.16020 0.81725 0.80034 0.82126 1.90858 1.77493 1.44483 1.34868 1.45570 1.05357 1.61939 1.24694 1.19383 0.87965 0.95826 0.85353 1.21065 0.89768 1.39822 1.07378 0.90349 1.24772 0.94710 0.94868 0.98215 1.69874 0.99770 1.46168 1.37180 0.86820 0.78441 0.80685 0.83774 1.19866 1.18399 1.20928 1.22164 1.00179 0.95858 0.83991 1.21874 0.79794 1.00169 0.96062 0.89762 1.22274 1.01575 1.01125 0.96088 1.47362 1.05986 1.59145 1.20605 1.18311 0.83992 0.77569 0.79615 1.90932 1.15536 1.61634 1.77239 1.87296 1.38816 1.65272 1.34187 1.22112 0.88180 0.94459 0.87320 1.22475 0.98850 1.00027 1.02349 1.21842 1.01127 0.99838 0.96793 1.22469 1.01153 0.98019 1.02047 0.91100 0.90257 0.93043 0.87437 0.91580 0.77306 0.95768 0.96412 0.92254 0.90920 0.88642 0.90204 0.90858 0.90070 0.92403 0.91659 0.89464 0.91600 0.90619 0.91567 0.89481 0.91650 0.92440 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.44 7.60 37.16 0.28 -1.16 16 2 C 0.14 1.66 3.64 -67.48 -0.25 1.41 16 3 H 0.08 0.98 8.14 -51.93 -0.42 0.56 16 4 C 0.12 1.56 5.91 -3.60 -0.02 1.54 16 5 N -0.64 -9.42 2.94 -177.94 -0.52 -9.94 16 6 C 0.70 13.68 8.29 -86.92 -0.72 12.96 16 7 O -0.60 -13.89 15.76 5.29 0.08 -13.80 16 8 N -0.72 -14.67 5.46 -66.42 -0.36 -15.04 16 9 C 0.24 5.83 4.50 -5.19 -0.02 5.80 16 10 C -0.54 -14.68 9.83 -34.44 -0.34 -15.02 16 11 H 0.08 2.19 7.84 -52.48 -0.41 1.78 16 12 C 0.08 2.19 5.47 -17.82 -0.10 2.09 16 13 N -0.89 -26.22 13.96 55.43 0.77 -25.44 16 14 Si 0.88 21.33 27.47 -169.99 -4.67 16.66 16 15 H -0.27 -6.56 7.11 56.52 0.40 -6.16 16 16 H -0.26 -6.30 6.54 56.52 0.37 -5.94 16 17 H -0.28 -6.77 7.11 56.52 0.40 -6.36 16 18 C 0.10 1.18 5.90 -3.37 -0.02 1.16 16 19 C 0.13 1.27 3.66 -67.25 -0.25 1.03 16 20 H 0.08 0.90 8.14 -51.93 -0.42 0.48 16 21 C -0.15 -1.26 7.51 37.16 0.28 -0.98 16 22 N -0.59 -6.52 2.95 -162.90 -0.48 -7.00 16 23 C 0.65 7.30 7.44 54.05 0.40 7.70 16 24 O -0.56 -6.94 7.41 -19.27 -0.14 -7.09 16 25 O -0.34 -3.26 4.29 -40.32 -0.17 -3.43 16 26 C 0.12 0.94 1.13 -90.62 -0.10 0.84 16 27 C -0.18 -1.49 8.37 37.16 0.31 -1.17 16 28 C -0.14 -0.83 8.85 37.16 0.33 -0.50 16 29 C -0.18 -1.47 8.37 37.16 0.31 -1.16 16 30 H 0.07 0.82 6.76 -51.93 -0.35 0.47 16 31 H 0.08 0.92 6.74 -51.93 -0.35 0.57 16 32 H 0.05 0.49 8.14 -51.93 -0.42 0.06 16 33 H 0.11 1.53 6.99 -51.93 -0.36 1.17 16 34 H 0.07 0.80 8.12 -51.93 -0.42 0.37 16 35 H 0.39 6.96 5.79 -40.82 -0.24 6.72 16 36 H 0.02 0.63 7.20 -51.93 -0.37 0.26 16 37 H 0.02 0.46 7.57 -51.93 -0.39 0.07 16 38 H 0.27 7.36 8.31 -40.82 -0.34 7.02 16 39 H 0.07 0.77 8.12 -51.93 -0.42 0.35 16 40 H 0.10 1.07 5.61 -51.93 -0.29 0.78 16 41 H 0.08 0.68 6.67 -51.93 -0.35 0.34 16 42 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 43 H 0.08 0.69 6.57 -51.93 -0.34 0.35 16 44 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 45 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 46 H 0.09 0.90 5.88 -51.93 -0.31 0.60 16 47 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 48 H 0.07 0.35 8.14 -51.93 -0.42 -0.07 16 49 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 50 H 0.09 0.90 5.88 -51.93 -0.31 0.60 16 51 H 0.06 0.44 8.14 -51.93 -0.42 0.01 16 52 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 LS Contribution 391.08 15.07 5.89 5.89 Total: -1.00 -32.25 391.08 -8.23 -40.48 By element: Atomic # 1 Polarization: 12.90 SS G_CDS: -8.73 Total: 4.17 kcal Atomic # 6 Polarization: 14.44 SS G_CDS: 0.10 Total: 14.54 kcal Atomic # 7 Polarization: -56.83 SS G_CDS: -0.59 Total: -57.42 kcal Atomic # 8 Polarization: -24.09 SS G_CDS: -0.23 Total: -24.32 kcal Atomic # 14 Polarization: 21.33 SS G_CDS: -4.67 Total: 16.66 kcal Total LS contribution 5.89 Total: 5.89 kcal Total: -32.25 -8.23 -40.48 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000787359359.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.473 kcal (2) G-P(sol) polarization free energy of solvation -32.249 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.722 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.230 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.480 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.952 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds