Wall clock time and date at job start Wed Apr 1 2020 01:31:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08996 * 109.61122 * 2 1 4 4 C 1.53364 * 109.60981 * 239.65220 * 2 1 3 5 5 N 1.46969 * 108.63256 * 190.66318 * 4 2 1 6 6 C 1.34783 * 120.59376 * 235.19989 * 5 4 2 7 7 O 1.21587 * 119.99453 * 5.18792 * 6 5 4 8 8 N 1.34768 * 120.00080 * 185.18252 * 6 5 4 9 9 C 1.46500 * 119.99942 * 175.02143 * 8 6 5 10 10 C 1.50697 * 109.47308 * 180.02562 * 9 8 6 11 11 H 1.08007 * 119.99907 * 359.97438 * 10 9 8 12 12 C 1.37874 * 120.00506 * 180.02562 * 10 9 8 13 13 N 1.31513 * 120.00705 * 180.02562 * 12 10 9 14 14 Si 1.86801 * 119.99729 * 359.97438 * 12 10 9 15 15 H 1.48508 * 109.47327 * 270.00332 * 14 12 10 16 16 H 1.48501 * 109.47300 * 30.00284 * 14 12 10 17 17 H 1.48502 * 109.47328 * 150.00292 * 14 12 10 18 18 C 1.46964 * 118.81621 * 55.48087 * 5 4 2 19 19 C 1.53809 * 108.39468 * 304.48339 * 18 5 4 20 20 H 1.08997 * 109.88272 * 289.76472 * 19 18 5 21 21 C 1.53006 * 109.53211 * 169.29851 * 19 18 5 22 22 N 1.46968 * 108.58261 * 49.63873 * 19 18 5 23 23 C 1.34774 * 120.60146 * 124.62143 * 22 19 18 24 24 O 1.21502 * 120.00463 * 174.45693 * 23 22 19 25 25 O 1.34639 * 119.99462 * 354.46081 * 23 22 19 26 26 C 1.45200 * 116.99670 * 179.97438 * 25 23 22 27 27 C 1.52997 * 109.47106 * 60.00549 * 26 25 23 28 28 C 1.53001 * 109.47034 * 180.02562 * 26 25 23 29 29 C 1.53001 * 109.47480 * 299.99960 * 26 25 23 30 30 H 1.09004 * 109.46779 * 186.48490 * 1 2 3 31 31 H 1.09000 * 109.47035 * 306.48928 * 1 2 3 32 32 H 1.09000 * 109.46592 * 66.48711 * 1 2 3 33 33 H 1.08998 * 109.61337 * 70.91857 * 4 2 1 34 34 H 1.09006 * 109.75457 * 310.48833 * 4 2 1 35 35 H 0.96999 * 120.00161 * 355.01919 * 8 6 5 36 36 H 1.08995 * 109.47195 * 59.99822 * 9 8 6 37 37 H 1.09003 * 109.47018 * 299.99764 * 9 8 6 38 38 H 0.96998 * 120.00358 * 179.97438 * 13 12 10 39 39 H 1.09001 * 109.60512 * 64.26336 * 18 5 4 40 40 H 1.08997 * 109.61079 * 184.77615 * 18 5 4 41 41 H 1.08995 * 109.47161 * 299.22389 * 21 19 18 42 42 H 1.09003 * 109.46788 * 59.22415 * 21 19 18 43 43 H 1.09001 * 109.47101 * 179.22290 * 21 19 18 44 44 H 1.09004 * 109.47205 * 59.99407 * 27 26 25 45 45 H 1.09001 * 109.47378 * 179.97438 * 27 26 25 46 46 H 1.09005 * 109.46727 * 299.99692 * 27 26 25 47 47 H 1.09005 * 109.47216 * 60.00112 * 28 26 25 48 48 H 1.09001 * 109.47195 * 180.02562 * 28 26 25 49 49 H 1.09004 * 109.46971 * 300.00406 * 28 26 25 50 50 H 1.09005 * 109.46514 * 60.00331 * 29 26 25 51 51 H 1.09001 * 109.47047 * 179.97438 * 29 26 25 52 52 H 1.08992 * 109.47188 * 300.00421 * 29 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8959 1.0267 0.0000 4 6 2.0448 -0.7299 -1.2467 5 7 3.4916 -0.9437 -1.1019 6 6 4.3477 -0.5058 -2.0463 7 8 3.9360 0.1537 -2.9811 8 7 5.6599 -0.7987 -1.9543 9 6 6.5730 -0.4173 -3.0346 10 6 7.9722 -0.8572 -2.6885 11 1 8.1624 -1.3693 -1.7567 12 6 9.0098 -0.6050 -3.5607 13 7 10.2308 -0.9894 -3.2589 14 14 8.6811 0.2813 -5.1718 15 1 8.3637 -0.7131 -6.2281 16 1 7.5324 1.2070 -5.0022 17 1 9.8860 1.0547 -5.5661 18 6 3.9878 -1.6491 0.0881 19 6 3.4734 -0.9142 1.3376 20 1 3.9772 0.0473 1.4358 21 6 3.7449 -1.7655 2.5797 22 7 2.0266 -0.7005 1.1929 23 6 1.1704 -1.1393 2.1367 24 8 -0.0116 -0.8697 2.0574 25 8 1.6251 -1.8764 3.1676 26 6 0.6466 -2.3143 4.1469 27 6 -0.4119 -3.1787 3.4589 28 6 1.3450 -3.1323 5.2351 29 6 -0.0241 -1.0931 4.7791 30 1 -0.3633 -1.0211 0.1161 31 1 -0.3633 0.6111 0.8262 32 1 -0.3632 0.4100 -0.9424 33 1 1.8514 -0.1236 -2.1316 34 1 1.5409 -1.6916 -1.3449 35 1 5.9998 -1.2620 -1.1729 36 1 6.5531 0.6650 -3.1620 37 1 6.2602 -0.8981 -3.9615 38 1 10.9607 -0.8123 -3.8727 39 1 3.6187 -2.6747 0.0858 40 1 5.0777 -1.6499 0.0850 41 1 3.2198 -2.7164 2.4903 42 1 4.8158 -1.9486 2.6677 43 1 3.3925 -1.2377 3.4659 44 1 0.0661 -4.0487 3.0086 45 1 -1.1462 -3.5078 4.1941 46 1 -0.9094 -2.5955 2.6839 47 1 2.0990 -2.5162 5.7252 48 1 0.6104 -3.4614 5.9700 49 1 1.8233 -4.0023 4.7850 50 1 -0.5217 -0.5101 4.0040 51 1 -0.7590 -1.4219 5.5139 52 1 0.7299 -0.4774 5.2691 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000787359359.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:31:13 Heat of formation + Delta-G solvation = -89.503809 kcal Electronic energy + Delta-G solvation = -32233.946793 eV Core-core repulsion = 28041.677447 eV Total energy + Delta-G solvation = -4192.269346 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 341.215 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -42.36059 -41.21288 -39.38371 -37.81350 -36.33988 -35.78453 -35.03511 -34.29079 -33.98886 -30.61039 -29.89760 -28.26699 -28.22973 -27.84858 -27.04549 -24.60520 -23.83406 -22.88251 -21.97541 -21.16913 -20.55621 -19.54377 -18.49152 -18.01787 -17.80234 -17.46089 -17.23428 -16.60701 -16.56092 -16.33026 -15.80891 -15.59572 -15.47416 -15.06059 -14.90171 -14.85128 -14.47877 -14.39079 -13.98471 -13.95894 -13.75910 -13.64056 -13.13177 -13.06819 -13.03261 -12.93231 -12.83979 -12.75383 -12.69831 -12.60190 -12.46576 -12.38932 -12.02774 -12.00751 -11.91433 -11.63056 -11.56803 -11.21016 -11.08963 -10.89941 -10.46802 -10.27637 -9.94723 -9.28292 -8.37890 -6.44353 1.12116 1.34748 1.37271 1.50178 1.68177 1.81606 2.12825 2.30361 2.78593 2.97827 3.01845 3.58714 3.71022 3.86375 3.90396 3.91838 4.00281 4.05529 4.07953 4.14208 4.36738 4.48099 4.58194 4.64266 4.69192 4.70041 4.73199 4.77449 4.84977 4.86071 4.93737 4.95812 4.97835 5.03479 5.06826 5.10286 5.15900 5.24919 5.29957 5.37235 5.38089 5.42538 5.43164 5.52623 5.56851 5.60319 5.85850 6.18584 6.43276 6.56836 7.04940 7.20389 7.35413 7.58294 8.76564 Molecular weight = 341.21amu Principal moments of inertia in cm(-1) A = 0.021108 B = 0.002611 C = 0.002387 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1326.219281 B =10721.188355 C =11726.856102 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C 0.150 3.850 3 H 0.075 0.925 4 C 0.123 3.877 5 N -0.629 5.629 6 C 0.699 3.301 7 O -0.637 6.637 8 N -0.720 5.720 9 C 0.251 3.749 10 C -0.543 4.543 11 H 0.061 0.939 12 C 0.029 3.971 13 N -0.930 5.930 14 Si 0.935 3.065 15 H -0.265 1.265 16 H -0.261 1.261 17 H -0.274 1.274 18 C 0.100 3.900 19 C 0.128 3.872 20 H 0.080 0.920 21 C -0.144 4.144 22 N -0.592 5.592 23 C 0.647 3.353 24 O -0.576 6.576 25 O -0.337 6.337 26 C 0.108 3.892 27 C -0.175 4.175 28 C -0.134 4.134 29 C -0.175 4.175 30 H 0.063 0.937 31 H 0.070 0.930 32 H 0.063 0.937 33 H 0.094 0.906 34 H 0.079 0.921 35 H 0.403 0.597 36 H 0.010 0.990 37 H 0.009 0.991 38 H 0.272 0.728 39 H 0.088 0.912 40 H 0.099 0.901 41 H 0.080 0.920 42 H 0.088 0.912 43 H 0.081 0.919 44 H 0.057 0.943 45 H 0.081 0.919 46 H 0.063 0.937 47 H 0.068 0.932 48 H 0.092 0.908 49 H 0.068 0.932 50 H 0.062 0.938 51 H 0.081 0.919 52 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.870 -4.451 18.868 28.485 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C 0.047 3.953 3 H 0.093 0.907 4 C -0.001 4.001 5 N -0.366 5.366 6 C 0.401 3.599 7 O -0.520 6.520 8 N -0.376 5.376 9 C 0.127 3.873 10 C -0.581 4.581 11 H 0.079 0.921 12 C -0.172 4.172 13 N -0.569 5.569 14 Si 0.759 3.241 15 H -0.190 1.190 16 H -0.185 1.185 17 H -0.199 1.199 18 C -0.023 4.023 19 C 0.025 3.975 20 H 0.098 0.902 21 C -0.201 4.201 22 N -0.334 5.334 23 C 0.403 3.597 24 O -0.466 6.466 25 O -0.252 6.252 26 C 0.072 3.928 27 C -0.233 4.233 28 C -0.191 4.191 29 C -0.232 4.232 30 H 0.082 0.918 31 H 0.088 0.912 32 H 0.081 0.919 33 H 0.112 0.888 34 H 0.098 0.902 35 H 0.241 0.759 36 H 0.028 0.972 37 H 0.027 0.973 38 H 0.081 0.919 39 H 0.107 0.893 40 H 0.117 0.883 41 H 0.098 0.902 42 H 0.107 0.893 43 H 0.099 0.901 44 H 0.076 0.924 45 H 0.099 0.901 46 H 0.082 0.918 47 H 0.087 0.913 48 H 0.111 0.889 49 H 0.087 0.913 50 H 0.081 0.919 51 H 0.100 0.900 52 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -21.324 -3.963 18.167 28.293 hybrid contribution 0.440 0.264 -0.615 0.801 sum -20.884 -3.699 17.553 27.530 Atomic orbital electron populations 1.22011 0.90726 1.03515 1.01645 1.21615 0.96682 0.94957 0.82027 0.90705 1.21981 0.78333 1.01418 0.98406 1.47225 1.06406 1.61107 1.21895 1.16090 0.81631 0.79746 0.82477 1.90827 1.78095 1.46233 1.36798 1.45277 1.05499 1.62443 1.24355 1.18970 0.87428 0.94698 0.86235 1.21239 0.91046 1.39132 1.06679 0.92070 1.25534 0.94533 0.95655 1.01446 1.69968 1.00684 1.47583 1.38630 0.85899 0.78442 0.79731 0.80069 1.19044 1.18509 1.19905 1.22406 1.00478 0.96442 0.83021 1.21894 0.79193 1.00235 0.96220 0.90177 1.22206 1.02550 1.00524 0.94771 1.47395 1.06353 1.59148 1.20486 1.18397 0.83777 0.77593 0.79893 1.90942 1.16114 1.62001 1.77584 1.87314 1.39212 1.64761 1.33892 1.22376 0.88333 0.94639 0.87473 1.22418 0.99110 0.99593 1.02137 1.21846 1.01515 0.99501 0.96233 1.22413 1.01382 0.97828 1.01623 0.91845 0.91161 0.91876 0.88810 0.90238 0.75867 0.97162 0.97302 0.91861 0.89340 0.88335 0.90158 0.89345 0.90083 0.92357 0.90062 0.91786 0.91264 0.88949 0.91292 0.91879 0.90024 0.92350 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.51 7.60 71.98 0.55 -1.97 16 2 C 0.15 3.34 3.64 45.02 0.16 3.51 16 3 H 0.07 1.78 8.14 -2.39 -0.02 1.76 16 4 C 0.12 3.07 5.91 86.41 0.51 3.58 16 5 N -0.63 -17.96 2.94 -835.15 -2.46 -20.42 16 6 C 0.70 27.09 8.29 179.06 1.49 28.58 16 7 O -0.64 -29.71 15.76 -3.99 -0.06 -29.78 16 8 N -0.72 -29.04 5.46 -482.31 -2.63 -31.67 16 9 C 0.25 12.30 4.50 85.63 0.39 12.69 16 10 C -0.54 -29.51 9.83 25.60 0.25 -29.26 16 11 H 0.06 3.46 7.84 -2.91 -0.02 3.44 16 12 C 0.03 1.61 5.47 84.65 0.46 2.07 16 13 N -0.93 -54.77 13.96 21.45 0.30 -54.47 16 14 Si 0.93 43.79 27.47 68.60 1.88 45.67 16 15 H -0.27 -12.05 7.11 99.48 0.71 -11.34 16 16 H -0.26 -12.19 6.54 99.48 0.65 -11.54 16 17 H -0.27 -12.32 7.11 99.48 0.71 -11.62 16 18 C 0.10 2.12 5.90 86.56 0.51 2.63 16 19 C 0.13 2.41 3.66 45.18 0.17 2.57 16 20 H 0.08 1.60 8.14 -2.39 -0.02 1.58 16 21 C -0.14 -2.03 7.51 71.98 0.54 -1.49 16 22 N -0.59 -12.41 2.95 -899.71 -2.65 -15.06 16 23 C 0.65 13.83 7.44 129.79 0.97 14.80 16 24 O -0.58 -13.89 7.41 19.83 0.15 -13.74 16 25 O -0.34 -5.87 4.29 -55.48 -0.24 -6.11 16 26 C 0.11 1.56 1.13 -10.79 -0.01 1.55 16 27 C -0.18 -2.62 8.37 71.98 0.60 -2.02 16 28 C -0.13 -1.24 8.85 71.98 0.64 -0.60 16 29 C -0.18 -2.62 8.37 71.98 0.60 -2.02 16 30 H 0.06 1.42 6.76 -2.39 -0.02 1.41 16 31 H 0.07 1.61 6.74 -2.39 -0.02 1.59 16 32 H 0.06 1.14 8.14 -2.39 -0.02 1.12 16 33 H 0.09 2.66 6.99 -2.39 -0.02 2.64 16 34 H 0.08 1.80 8.12 -2.38 -0.02 1.78 16 35 H 0.40 14.08 5.79 -92.71 -0.54 13.54 16 36 H 0.01 0.54 7.20 -2.39 -0.02 0.53 16 37 H 0.01 0.46 7.57 -2.39 -0.02 0.44 16 38 H 0.27 14.96 8.31 -92.71 -0.77 14.19 16 39 H 0.09 1.66 8.12 -2.39 -0.02 1.65 16 40 H 0.10 2.05 5.61 -2.39 -0.01 2.04 16 41 H 0.08 1.17 6.67 -2.39 -0.02 1.15 16 42 H 0.09 1.01 8.14 -2.39 -0.02 0.99 16 43 H 0.08 1.20 6.57 -2.39 -0.02 1.18 16 44 H 0.06 0.85 8.14 -2.38 -0.02 0.83 16 45 H 0.08 0.93 8.14 -2.39 -0.02 0.91 16 46 H 0.06 1.28 5.88 -2.38 -0.01 1.27 16 47 H 0.07 0.61 8.14 -2.38 -0.02 0.60 16 48 H 0.09 0.57 8.14 -2.39 -0.02 0.55 16 49 H 0.07 0.62 8.14 -2.38 -0.02 0.60 16 50 H 0.06 1.27 5.88 -2.38 -0.01 1.26 16 51 H 0.08 0.93 8.14 -2.39 -0.02 0.91 16 52 H 0.06 0.85 8.14 -2.39 -0.02 0.83 16 Total: -1.00 -69.11 391.08 2.43 -66.68 By element: Atomic # 1 Polarization: 23.96 SS G_CDS: 0.32 Total: 24.29 kcal Atomic # 6 Polarization: 26.79 SS G_CDS: 7.82 Total: 34.61 kcal Atomic # 7 Polarization: -114.18 SS G_CDS: -7.44 Total: -121.62 kcal Atomic # 8 Polarization: -49.48 SS G_CDS: -0.15 Total: -49.63 kcal Atomic # 14 Polarization: 43.79 SS G_CDS: 1.88 Total: 45.67 kcal Total: -69.11 2.43 -66.68 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000787359359.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.825 kcal (2) G-P(sol) polarization free energy of solvation -69.111 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.936 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.432 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.679 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.504 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds