Wall clock time and date at job start Wed Apr 1 2020 01:31:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09003 * 109.74896 * 2 1 4 4 C 1.53809 * 109.76122 * 239.37580 * 2 1 3 5 5 N 1.46968 * 108.58092 * 289.95093 * 4 2 1 6 6 C 1.34774 * 120.59675 * 124.65951 * 5 4 2 7 7 O 1.21591 * 120.00067 * 5.05507 * 6 5 4 8 8 N 1.34770 * 120.00157 * 185.04734 * 6 5 4 9 9 C 1.46506 * 120.00270 * 174.94440 * 8 6 5 10 10 C 1.50694 * 109.47302 * 179.97438 * 9 8 6 11 11 H 1.08003 * 120.00040 * 0.02562 * 10 9 8 12 12 C 1.37879 * 119.99931 * 179.97438 * 10 9 8 13 13 N 1.31516 * 120.00123 * 0.02562 * 12 10 9 14 14 Si 1.86805 * 119.99881 * 179.97438 * 12 10 9 15 15 H 1.48505 * 109.46959 * 0.02562 * 14 12 10 16 16 H 1.48502 * 109.47101 * 120.00464 * 14 12 10 17 17 H 1.48495 * 109.47129 * 240.00102 * 14 12 10 18 18 C 1.46962 * 118.81148 * 304.64967 * 5 4 2 19 19 C 1.53372 * 108.63686 * 55.21831 * 18 5 4 20 20 H 1.08996 * 109.60565 * 70.32632 * 19 18 5 21 21 C 1.52999 * 109.75169 * 190.75105 * 19 18 5 22 22 N 1.46959 * 109.60910 * 120.42902 * 2 1 3 23 23 C 1.34777 * 120.59869 * 244.53826 * 22 2 1 24 24 O 1.21512 * 120.00383 * 174.00530 * 23 22 2 25 25 O 1.34637 * 119.99705 * 354.01543 * 23 22 2 26 26 C 1.45198 * 117.00091 * 179.97438 * 25 23 22 27 27 C 1.52998 * 109.47517 * 59.99599 * 26 25 23 28 28 C 1.52995 * 109.46873 * 299.99495 * 26 25 23 29 29 C 1.53007 * 109.47249 * 179.97438 * 26 25 23 30 30 H 1.09003 * 109.47242 * 299.57228 * 1 2 3 31 31 H 1.09008 * 109.47024 * 59.57100 * 1 2 3 32 32 H 1.08992 * 109.47596 * 179.56906 * 1 2 3 33 33 H 1.08996 * 109.74728 * 170.15760 * 4 2 1 34 34 H 1.09000 * 109.53410 * 49.61115 * 4 2 1 35 35 H 0.97009 * 120.00248 * 354.93850 * 8 6 5 36 36 H 1.09000 * 109.46553 * 300.00039 * 9 8 6 37 37 H 1.08993 * 109.47396 * 59.99707 * 9 8 6 38 38 H 0.96996 * 119.99884 * 179.97438 * 13 12 10 39 39 H 1.09006 * 109.60606 * 295.48130 * 18 5 4 40 40 H 1.08997 * 109.61182 * 174.96933 * 18 5 4 41 41 H 1.08994 * 109.47387 * 184.62378 * 21 19 18 42 42 H 1.09009 * 109.47357 * 304.62363 * 21 19 18 43 43 H 1.09003 * 109.47456 * 64.62167 * 21 19 18 44 44 H 1.09005 * 109.46855 * 300.00103 * 27 26 25 45 45 H 1.08995 * 109.47171 * 59.99503 * 27 26 25 46 46 H 1.08999 * 109.47646 * 180.02562 * 27 26 25 47 47 H 1.09001 * 109.47212 * 180.02562 * 28 26 25 48 48 H 1.09005 * 109.47375 * 299.99660 * 28 26 25 49 49 H 1.08993 * 109.47376 * 59.99782 * 28 26 25 50 50 H 1.08995 * 109.46780 * 300.00094 * 29 26 25 51 51 H 1.09005 * 109.46617 * 59.99695 * 29 26 25 52 52 H 1.08996 * 109.46927 * 179.97438 * 29 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8983 1.0259 0.0000 4 6 2.0500 -0.7374 -1.2456 5 7 1.7610 -2.1706 -1.0961 6 6 1.0609 -2.8312 -2.0394 7 8 0.7414 -2.2655 -3.0672 8 7 0.7150 -4.1190 -1.8436 9 6 -0.1394 -4.8042 -2.8167 10 6 -0.3745 -6.2232 -2.3674 11 1 0.0678 -6.5791 -1.4486 12 6 -1.1552 -7.0670 -3.1288 13 7 -1.6943 -6.6335 -4.2473 14 14 -1.4461 -8.8263 -2.5722 15 1 -0.7341 -9.0642 -1.2908 16 1 -2.9013 -9.0500 -2.3784 17 1 -0.9346 -9.7631 -3.6046 18 6 2.2493 -2.8705 0.1003 19 6 1.7341 -2.1343 1.3433 20 1 0.6584 -2.2828 1.4367 21 6 2.4370 -2.6724 2.5912 22 7 2.0232 -0.7011 1.1937 23 6 2.7232 -0.0405 2.1371 24 8 3.0319 -0.6022 3.1694 25 8 3.0803 1.2419 1.9357 26 6 3.8325 1.8908 2.9947 27 6 5.1400 1.1321 3.2303 28 6 3.0045 1.8918 4.2813 29 6 4.1459 3.3322 2.5882 30 1 -0.3634 0.5072 0.8938 31 1 -0.3633 0.5205 -0.8862 32 1 -0.3634 -1.0275 -0.0077 33 1 3.1257 -0.5889 -1.3391 34 1 1.5468 -0.3534 -2.1330 35 1 1.0317 -4.5923 -1.0583 36 1 -1.0941 -4.2836 -2.8920 37 1 0.3500 -4.8082 -3.7906 38 1 -2.2432 -7.2273 -4.7831 39 1 3.3393 -2.8739 0.1027 40 1 1.8778 -3.8952 0.1018 41 1 2.0099 -2.2053 3.4786 42 1 2.3007 -3.7524 2.6479 43 1 3.5012 -2.4429 2.5364 44 1 4.9171 0.1051 3.5197 45 1 5.7298 1.1313 2.3137 46 1 5.7045 1.6190 4.0255 47 1 3.5690 2.3794 5.0762 48 1 2.0730 2.4325 4.1136 49 1 2.7816 0.8650 4.5707 50 1 4.7358 3.3311 1.6717 51 1 3.2144 3.8730 2.4202 52 1 4.7101 3.8194 3.3834 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000787359360.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:31:18 Heat of formation + Delta-G solvation = -85.916439 kcal Electronic energy + Delta-G solvation = -32132.652331 eV Core-core repulsion = 27940.538545 eV Total energy + Delta-G solvation = -4192.113786 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 341.215 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -41.33502 -39.92608 -38.31483 -36.69485 -34.72960 -34.32376 -33.71838 -33.25193 -32.17731 -29.72479 -27.70835 -27.65771 -27.62625 -26.74697 -25.61195 -23.56329 -22.78099 -21.87235 -20.94288 -19.74357 -18.97450 -18.31935 -17.13408 -16.81048 -16.47608 -16.05160 -15.78793 -15.54103 -15.40892 -14.89271 -14.73857 -14.54776 -14.08192 -13.84917 -13.79540 -13.63173 -13.21054 -12.95170 -12.93977 -12.76322 -12.44385 -12.41498 -12.20309 -12.17796 -12.00645 -11.93228 -11.77986 -11.69523 -11.65488 -11.40739 -11.31708 -11.23994 -11.05817 -10.92311 -10.91309 -10.53984 -10.29603 -9.54714 -9.40150 -9.34663 -9.17304 -8.74533 -8.28977 -7.75000 -6.16352 -4.22878 1.91904 2.69167 3.08883 3.23619 3.31164 3.34099 3.57751 3.83502 4.29348 4.44046 4.47085 4.48641 4.62260 4.63808 4.76722 4.86071 4.94435 5.08370 5.14399 5.17738 5.20046 5.25089 5.27411 5.35611 5.40113 5.48597 5.56316 5.58155 5.63440 5.67244 5.69875 5.77798 5.79066 5.85702 5.99667 6.01667 6.03394 6.15451 6.23103 6.30034 6.47383 6.66349 7.05427 7.28818 7.47876 7.51368 7.55720 7.82305 8.00366 8.21771 8.73269 8.86583 9.27690 9.45613 10.93866 Molecular weight = 341.21amu Principal moments of inertia in cm(-1) A = 0.022672 B = 0.002514 C = 0.002365 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1234.729394 B =11136.158905 C =11836.578847 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.124 3.876 3 H 0.107 0.893 4 C 0.123 3.877 5 N -0.638 5.638 6 C 0.699 3.301 7 O -0.595 6.595 8 N -0.729 5.729 9 C 0.266 3.734 10 C -0.541 4.541 11 H 0.062 0.938 12 C 0.064 3.936 13 N -0.885 5.885 14 Si 0.903 3.097 15 H -0.272 1.272 16 H -0.282 1.282 17 H -0.282 1.282 18 C 0.103 3.897 19 C 0.144 3.856 20 H 0.084 0.916 21 C -0.138 4.138 22 N -0.586 5.586 23 C 0.655 3.345 24 O -0.563 6.563 25 O -0.366 6.366 26 C 0.137 3.863 27 C -0.182 4.182 28 C -0.182 4.182 29 C -0.141 4.141 30 H 0.056 0.944 31 H 0.073 0.927 32 H 0.064 0.936 33 H 0.064 0.936 34 H 0.106 0.894 35 H 0.385 0.615 36 H 0.024 0.976 37 H 0.026 0.974 38 H 0.265 0.735 39 H 0.070 0.930 40 H 0.095 0.905 41 H 0.081 0.919 42 H 0.052 0.948 43 H 0.068 0.932 44 H 0.088 0.912 45 H 0.058 0.942 46 H 0.067 0.933 47 H 0.067 0.933 48 H 0.058 0.942 49 H 0.088 0.912 50 H 0.066 0.934 51 H 0.066 0.934 52 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.630 17.901 16.745 27.131 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C 0.020 3.980 3 H 0.125 0.875 4 C -0.001 4.001 5 N -0.377 5.377 6 C 0.400 3.600 7 O -0.474 6.474 8 N -0.383 5.383 9 C 0.145 3.855 10 C -0.579 4.579 11 H 0.080 0.920 12 C -0.140 4.140 13 N -0.522 5.522 14 Si 0.730 3.270 15 H -0.196 1.196 16 H -0.208 1.208 17 H -0.208 1.208 18 C -0.022 4.022 19 C 0.041 3.959 20 H 0.101 0.899 21 C -0.195 4.195 22 N -0.326 5.326 23 C 0.410 3.590 24 O -0.453 6.453 25 O -0.281 6.281 26 C 0.100 3.900 27 C -0.239 4.239 28 C -0.239 4.239 29 C -0.198 4.198 30 H 0.075 0.925 31 H 0.092 0.908 32 H 0.083 0.917 33 H 0.083 0.917 34 H 0.124 0.876 35 H 0.220 0.780 36 H 0.042 0.958 37 H 0.044 0.956 38 H 0.075 0.925 39 H 0.089 0.911 40 H 0.113 0.887 41 H 0.100 0.900 42 H 0.071 0.929 43 H 0.087 0.913 44 H 0.107 0.893 45 H 0.077 0.923 46 H 0.086 0.914 47 H 0.086 0.914 48 H 0.077 0.923 49 H 0.107 0.893 50 H 0.085 0.915 51 H 0.085 0.915 52 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges 11.358 18.102 16.125 26.772 hybrid contribution -0.050 -1.175 0.604 1.322 sum 11.308 16.927 16.729 26.349 Atomic orbital electron populations 1.22049 0.93964 1.03288 1.02262 1.21906 0.95326 0.96643 0.84117 0.87527 1.21836 1.00227 0.80109 0.97972 1.47205 1.59360 1.09424 1.21693 1.16038 0.78653 0.82455 0.82863 1.90866 1.61134 1.68356 1.27010 1.45902 1.54235 1.09775 1.28366 1.18997 0.88703 0.90577 0.87185 1.21240 1.32269 0.95850 1.08570 0.91965 1.24941 0.95277 0.99055 0.94732 1.69986 1.32522 1.36241 1.13470 0.86371 0.78041 0.83874 0.78668 1.19642 1.20819 1.20813 1.22080 0.99497 0.96568 0.84055 1.21701 1.00614 0.77363 0.96196 0.89855 1.22208 1.01721 0.99227 0.96347 1.47123 1.54926 1.09478 1.21086 1.18061 0.77826 0.80308 0.82790 1.90940 1.59860 1.67447 1.27066 1.86304 1.69149 1.25301 1.47329 1.22019 0.90579 0.91987 0.85432 1.22508 0.95850 1.03338 1.02250 1.22501 0.99985 1.05043 0.96400 1.21859 1.02595 0.92733 1.02613 0.92529 0.90847 0.91697 0.91733 0.87551 0.78001 0.95789 0.95645 0.92514 0.91139 0.88653 0.89972 0.92940 0.91276 0.89299 0.92266 0.91371 0.91367 0.92316 0.89311 0.91474 0.91522 0.90298 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.81 9.14 37.16 0.34 -1.47 16 2 C 0.12 1.37 3.27 -67.26 -0.22 1.15 16 3 H 0.11 1.05 6.91 -51.93 -0.36 0.69 16 4 C 0.12 1.59 5.98 -3.37 -0.02 1.57 16 5 N -0.64 -9.65 2.59 -177.94 -0.46 -10.11 16 6 C 0.70 14.15 8.29 -86.93 -0.72 13.43 16 7 O -0.59 -14.41 15.78 5.29 0.08 -14.33 16 8 N -0.73 -15.40 5.46 -66.42 -0.36 -15.76 16 9 C 0.27 7.04 5.43 -5.19 -0.03 7.01 16 10 C -0.54 -14.54 9.28 -34.44 -0.32 -14.86 16 11 H 0.06 1.57 7.60 -52.48 -0.40 1.17 16 12 C 0.06 1.75 5.46 -17.82 -0.10 1.65 16 13 N -0.88 -25.92 13.29 55.43 0.74 -25.19 16 14 Si 0.90 20.73 29.54 -169.99 -5.02 15.71 16 15 H -0.27 -6.03 7.11 56.52 0.40 -5.63 16 16 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 17 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 18 C 0.10 1.27 5.91 -3.60 -0.02 1.24 16 19 C 0.14 1.65 3.21 -67.48 -0.22 1.43 16 20 H 0.08 1.00 7.38 -51.93 -0.38 0.62 16 21 C -0.14 -1.48 7.60 37.16 0.28 -1.19 16 22 N -0.59 -6.72 2.66 -162.91 -0.43 -7.15 16 23 C 0.65 7.75 7.56 54.06 0.41 8.16 16 24 O -0.56 -7.10 7.39 -19.28 -0.14 -7.24 16 25 O -0.37 -3.93 8.53 -40.32 -0.34 -4.28 16 26 C 0.14 1.18 1.13 -90.62 -0.10 1.08 16 27 C -0.18 -1.54 8.37 37.16 0.31 -1.23 16 28 C -0.18 -1.53 8.37 37.16 0.31 -1.22 16 29 C -0.14 -0.89 8.85 37.16 0.33 -0.56 16 30 H 0.06 0.60 8.14 -51.93 -0.42 0.17 16 31 H 0.07 0.81 8.14 -51.92 -0.42 0.39 16 32 H 0.06 0.89 7.00 -51.93 -0.36 0.52 16 33 H 0.06 0.77 8.14 -51.93 -0.42 0.34 16 34 H 0.11 1.52 7.00 -51.93 -0.36 1.16 16 35 H 0.39 7.03 5.77 -40.82 -0.24 6.80 16 36 H 0.02 0.70 8.14 -51.93 -0.42 0.28 16 37 H 0.03 0.75 8.14 -51.93 -0.42 0.33 16 38 H 0.27 7.27 8.31 -40.82 -0.34 6.93 16 39 H 0.07 0.81 8.12 -51.93 -0.42 0.39 16 40 H 0.10 1.15 5.55 -51.93 -0.29 0.86 16 41 H 0.08 0.98 6.62 -51.93 -0.34 0.63 16 42 H 0.05 0.50 8.14 -51.92 -0.42 0.07 16 43 H 0.07 0.80 6.86 -51.93 -0.36 0.44 16 44 H 0.09 0.93 5.88 -51.93 -0.31 0.63 16 45 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 46 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 47 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 48 H 0.06 0.49 8.14 -51.93 -0.42 0.06 16 49 H 0.09 0.94 5.88 -51.93 -0.31 0.63 16 50 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 51 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 52 H 0.08 0.36 8.14 -51.93 -0.42 -0.06 16 LS Contribution 399.15 15.07 6.02 6.02 Total: -1.00 -32.21 399.15 -8.45 -40.66 By element: Atomic # 1 Polarization: 14.21 SS G_CDS: -8.76 Total: 5.46 kcal Atomic # 6 Polarization: 15.97 SS G_CDS: 0.24 Total: 16.21 kcal Atomic # 7 Polarization: -57.69 SS G_CDS: -0.52 Total: -58.21 kcal Atomic # 8 Polarization: -25.44 SS G_CDS: -0.40 Total: -25.84 kcal Atomic # 14 Polarization: 20.73 SS G_CDS: -5.02 Total: 15.71 kcal Total LS contribution 6.02 Total: 6.02 kcal Total: -32.21 -8.45 -40.66 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000787359360.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -45.252 kcal (2) G-P(sol) polarization free energy of solvation -32.214 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.466 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.450 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.664 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.916 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds