Wall clock time and date at job start Wed Apr 1 2020 01:31:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09003 * 109.74896 * 2 1 4 4 C 1.53809 * 109.76122 * 239.37580 * 2 1 3 5 5 N 1.46968 * 108.58092 * 289.95093 * 4 2 1 6 6 C 1.34774 * 120.59675 * 124.65951 * 5 4 2 7 7 O 1.21591 * 120.00067 * 5.05507 * 6 5 4 8 8 N 1.34770 * 120.00157 * 185.04734 * 6 5 4 9 9 C 1.46506 * 120.00270 * 174.94440 * 8 6 5 10 10 C 1.50694 * 109.47302 * 179.97438 * 9 8 6 11 11 H 1.08003 * 120.00040 * 0.02562 * 10 9 8 12 12 C 1.37879 * 119.99931 * 179.97438 * 10 9 8 13 13 N 1.31516 * 120.00123 * 0.02562 * 12 10 9 14 14 Si 1.86805 * 119.99881 * 179.97438 * 12 10 9 15 15 H 1.48505 * 109.46959 * 0.02562 * 14 12 10 16 16 H 1.48502 * 109.47101 * 120.00464 * 14 12 10 17 17 H 1.48495 * 109.47129 * 240.00102 * 14 12 10 18 18 C 1.46962 * 118.81148 * 304.64967 * 5 4 2 19 19 C 1.53372 * 108.63686 * 55.21831 * 18 5 4 20 20 H 1.08996 * 109.60565 * 70.32632 * 19 18 5 21 21 C 1.52999 * 109.75169 * 190.75105 * 19 18 5 22 22 N 1.46959 * 109.60910 * 120.42902 * 2 1 3 23 23 C 1.34777 * 120.59869 * 244.53826 * 22 2 1 24 24 O 1.21512 * 120.00383 * 174.00530 * 23 22 2 25 25 O 1.34637 * 119.99705 * 354.01543 * 23 22 2 26 26 C 1.45198 * 117.00091 * 179.97438 * 25 23 22 27 27 C 1.52998 * 109.47517 * 59.99599 * 26 25 23 28 28 C 1.52995 * 109.46873 * 299.99495 * 26 25 23 29 29 C 1.53007 * 109.47249 * 179.97438 * 26 25 23 30 30 H 1.09003 * 109.47242 * 299.57228 * 1 2 3 31 31 H 1.09008 * 109.47024 * 59.57100 * 1 2 3 32 32 H 1.08992 * 109.47596 * 179.56906 * 1 2 3 33 33 H 1.08996 * 109.74728 * 170.15760 * 4 2 1 34 34 H 1.09000 * 109.53410 * 49.61115 * 4 2 1 35 35 H 0.97009 * 120.00248 * 354.93850 * 8 6 5 36 36 H 1.09000 * 109.46553 * 300.00039 * 9 8 6 37 37 H 1.08993 * 109.47396 * 59.99707 * 9 8 6 38 38 H 0.96996 * 119.99884 * 179.97438 * 13 12 10 39 39 H 1.09006 * 109.60606 * 295.48130 * 18 5 4 40 40 H 1.08997 * 109.61182 * 174.96933 * 18 5 4 41 41 H 1.08994 * 109.47387 * 184.62378 * 21 19 18 42 42 H 1.09009 * 109.47357 * 304.62363 * 21 19 18 43 43 H 1.09003 * 109.47456 * 64.62167 * 21 19 18 44 44 H 1.09005 * 109.46855 * 300.00103 * 27 26 25 45 45 H 1.08995 * 109.47171 * 59.99503 * 27 26 25 46 46 H 1.08999 * 109.47646 * 180.02562 * 27 26 25 47 47 H 1.09001 * 109.47212 * 180.02562 * 28 26 25 48 48 H 1.09005 * 109.47375 * 299.99660 * 28 26 25 49 49 H 1.08993 * 109.47376 * 59.99782 * 28 26 25 50 50 H 1.08995 * 109.46780 * 300.00094 * 29 26 25 51 51 H 1.09005 * 109.46617 * 59.99695 * 29 26 25 52 52 H 1.08996 * 109.46927 * 179.97438 * 29 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8983 1.0259 0.0000 4 6 2.0500 -0.7374 -1.2456 5 7 1.7610 -2.1706 -1.0961 6 6 1.0609 -2.8312 -2.0394 7 8 0.7414 -2.2655 -3.0672 8 7 0.7150 -4.1190 -1.8436 9 6 -0.1394 -4.8042 -2.8167 10 6 -0.3745 -6.2232 -2.3674 11 1 0.0678 -6.5791 -1.4486 12 6 -1.1552 -7.0670 -3.1288 13 7 -1.6943 -6.6335 -4.2473 14 14 -1.4461 -8.8263 -2.5722 15 1 -0.7341 -9.0642 -1.2908 16 1 -2.9013 -9.0500 -2.3784 17 1 -0.9346 -9.7631 -3.6046 18 6 2.2493 -2.8705 0.1003 19 6 1.7341 -2.1343 1.3433 20 1 0.6584 -2.2828 1.4367 21 6 2.4370 -2.6724 2.5912 22 7 2.0232 -0.7011 1.1937 23 6 2.7232 -0.0405 2.1371 24 8 3.0319 -0.6022 3.1694 25 8 3.0803 1.2419 1.9357 26 6 3.8325 1.8908 2.9947 27 6 5.1400 1.1321 3.2303 28 6 3.0045 1.8918 4.2813 29 6 4.1459 3.3322 2.5882 30 1 -0.3634 0.5072 0.8938 31 1 -0.3633 0.5205 -0.8862 32 1 -0.3634 -1.0275 -0.0077 33 1 3.1257 -0.5889 -1.3391 34 1 1.5468 -0.3534 -2.1330 35 1 1.0317 -4.5923 -1.0583 36 1 -1.0941 -4.2836 -2.8920 37 1 0.3500 -4.8082 -3.7906 38 1 -2.2432 -7.2273 -4.7831 39 1 3.3393 -2.8739 0.1027 40 1 1.8778 -3.8952 0.1018 41 1 2.0099 -2.2053 3.4786 42 1 2.3007 -3.7524 2.6479 43 1 3.5012 -2.4429 2.5364 44 1 4.9171 0.1051 3.5197 45 1 5.7298 1.1313 2.3137 46 1 5.7045 1.6190 4.0255 47 1 3.5690 2.3794 5.0762 48 1 2.0730 2.4325 4.1136 49 1 2.7816 0.8650 4.5707 50 1 4.7358 3.3311 1.6717 51 1 3.2144 3.8730 2.4202 52 1 4.7101 3.8194 3.3834 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000787359360.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:31:17 Heat of formation + Delta-G solvation = -106.134022 kcal Electronic energy + Delta-G solvation = -32133.529031 eV Core-core repulsion = 27940.538545 eV Total energy + Delta-G solvation = -4192.990486 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 341.215 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -42.28544 -41.20796 -39.47382 -37.71088 -36.24355 -35.66975 -34.77530 -34.46223 -33.93499 -30.73759 -29.42339 -28.29444 -28.25613 -27.90322 -26.94242 -24.60941 -24.46209 -23.01667 -21.95979 -21.05236 -20.15698 -19.61118 -18.30216 -17.97332 -17.61350 -17.32959 -17.28003 -16.77629 -16.44947 -16.39242 -15.73735 -15.52134 -15.30235 -15.26824 -14.88391 -14.69864 -14.44803 -14.10207 -14.05842 -13.91770 -13.75125 -13.41639 -13.14124 -13.09184 -12.99662 -12.90465 -12.84943 -12.77384 -12.74734 -12.66801 -12.43462 -12.36508 -12.25106 -12.17900 -12.03298 -11.96381 -11.42960 -11.27721 -11.16477 -10.80331 -10.48481 -10.23706 -9.85361 -9.25251 -8.27100 -6.42973 1.04313 1.44654 1.45675 1.58679 1.74030 1.78699 2.20267 2.39232 2.73392 3.08118 3.08188 3.62245 3.63921 3.81332 3.86742 3.91081 3.96088 4.01751 4.10096 4.20997 4.33636 4.50228 4.55539 4.63458 4.67344 4.67949 4.71628 4.78549 4.83131 4.85228 4.91704 4.92414 4.94269 5.06760 5.08431 5.13961 5.20604 5.29479 5.31145 5.34965 5.39390 5.43029 5.50880 5.51650 5.60327 5.69090 5.86038 6.05473 6.37979 6.68500 7.14732 7.26926 7.32547 7.67405 8.85306 Molecular weight = 341.21amu Principal moments of inertia in cm(-1) A = 0.022672 B = 0.002514 C = 0.002365 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1234.729394 B =11136.158905 C =11836.578847 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.135 3.865 3 H 0.126 0.874 4 C 0.121 3.879 5 N -0.626 5.626 6 C 0.698 3.302 7 O -0.640 6.640 8 N -0.724 5.724 9 C 0.287 3.713 10 C -0.552 4.552 11 H 0.083 0.917 12 C 0.005 3.995 13 N -0.930 5.930 14 Si 0.983 3.017 15 H -0.253 1.253 16 H -0.279 1.279 17 H -0.280 1.280 18 C 0.102 3.898 19 C 0.148 3.852 20 H 0.078 0.922 21 C -0.124 4.124 22 N -0.587 5.587 23 C 0.653 3.347 24 O -0.571 6.571 25 O -0.370 6.370 26 C 0.127 3.873 27 C -0.178 4.178 28 C -0.177 4.177 29 C -0.137 4.137 30 H 0.067 0.933 31 H 0.074 0.926 32 H 0.039 0.961 33 H 0.082 0.918 34 H 0.091 0.909 35 H 0.401 0.599 36 H -0.013 1.013 37 H -0.015 1.015 38 H 0.268 0.732 39 H 0.087 0.913 40 H 0.099 0.901 41 H 0.071 0.929 42 H 0.067 0.933 43 H 0.062 0.938 44 H 0.066 0.934 45 H 0.058 0.942 46 H 0.087 0.913 47 H 0.087 0.913 48 H 0.058 0.942 49 H 0.065 0.935 50 H 0.067 0.933 51 H 0.067 0.933 52 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.000 18.046 19.131 29.337 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C 0.031 3.969 3 H 0.144 0.856 4 C -0.003 4.003 5 N -0.363 5.363 6 C 0.399 3.601 7 O -0.522 6.522 8 N -0.379 5.379 9 C 0.163 3.837 10 C -0.589 4.589 11 H 0.101 0.899 12 C -0.195 4.195 13 N -0.568 5.568 14 Si 0.806 3.194 15 H -0.176 1.176 16 H -0.205 1.205 17 H -0.206 1.206 18 C -0.022 4.022 19 C 0.045 3.955 20 H 0.096 0.904 21 C -0.182 4.182 22 N -0.328 5.328 23 C 0.409 3.591 24 O -0.462 6.462 25 O -0.285 6.285 26 C 0.091 3.909 27 C -0.235 4.235 28 C -0.235 4.235 29 C -0.193 4.193 30 H 0.086 0.914 31 H 0.093 0.907 32 H 0.059 0.941 33 H 0.100 0.900 34 H 0.109 0.891 35 H 0.239 0.761 36 H 0.005 0.995 37 H 0.003 0.997 38 H 0.077 0.923 39 H 0.105 0.895 40 H 0.117 0.883 41 H 0.090 0.910 42 H 0.086 0.914 43 H 0.081 0.919 44 H 0.085 0.915 45 H 0.077 0.923 46 H 0.105 0.895 47 H 0.106 0.894 48 H 0.077 0.923 49 H 0.084 0.916 50 H 0.086 0.914 51 H 0.086 0.914 52 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges 12.783 18.284 18.591 29.040 hybrid contribution -0.417 -1.094 -0.093 1.174 sum 12.366 17.190 18.498 28.118 Atomic orbital electron populations 1.21994 0.94318 1.01812 1.02902 1.21827 0.94870 0.97179 0.83028 0.85599 1.22022 1.01184 0.78647 0.98472 1.47146 1.57672 1.10262 1.21225 1.16138 0.78746 0.82034 0.83132 1.90833 1.62909 1.69174 1.29269 1.45493 1.54007 1.10349 1.28092 1.18409 0.87317 0.91146 0.86790 1.21599 1.32307 0.95777 1.09267 0.89939 1.26028 0.94741 1.04152 0.94572 1.70143 1.33405 1.38267 1.15022 0.85134 0.78011 0.77386 0.78821 1.17611 1.20503 1.20562 1.22285 1.00385 0.96582 0.82940 1.21634 1.00377 0.77500 0.95955 0.90383 1.22058 1.00893 1.00018 0.95227 1.47128 1.55035 1.09483 1.21144 1.18126 0.77695 0.80714 0.82592 1.90952 1.60055 1.67824 1.27375 1.86308 1.69318 1.24593 1.48284 1.22350 0.90350 0.93082 0.85161 1.22454 0.95995 1.02183 1.02848 1.22447 1.00344 1.03717 0.96959 1.21879 1.03001 0.91032 1.03438 0.91405 0.90708 0.94145 0.89979 0.89067 0.76100 0.99516 0.99672 0.92283 0.89494 0.88267 0.91039 0.91406 0.91947 0.91532 0.92314 0.89450 0.89415 0.92342 0.91632 0.91361 0.91366 0.88214 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.42 9.14 71.98 0.66 -2.76 16 2 C 0.13 2.82 3.27 45.18 0.15 2.97 16 3 H 0.13 2.22 6.91 -2.39 -0.02 2.21 16 4 C 0.12 3.03 5.98 86.56 0.52 3.55 16 5 N -0.63 -18.71 2.59 -835.15 -2.17 -20.88 16 6 C 0.70 28.95 8.29 179.06 1.49 30.43 16 7 O -0.64 -32.34 15.78 -4.00 -0.06 -32.40 16 8 N -0.72 -31.18 5.46 -482.31 -2.63 -33.81 16 9 C 0.29 15.78 5.43 85.63 0.47 16.24 16 10 C -0.55 -29.81 9.28 25.60 0.24 -29.57 16 11 H 0.08 4.03 7.60 -2.91 -0.02 4.01 16 12 C 0.00 0.26 5.46 84.65 0.46 0.72 16 13 N -0.93 -55.87 13.29 21.45 0.28 -55.58 16 14 Si 0.98 42.11 29.54 68.60 2.03 44.14 16 15 H -0.25 -9.97 7.11 99.48 0.71 -9.26 16 16 H -0.28 -11.77 7.11 99.48 0.71 -11.07 16 17 H -0.28 -11.83 7.11 99.48 0.71 -11.12 16 18 C 0.10 2.36 5.91 86.42 0.51 2.87 16 19 C 0.15 3.20 3.21 45.03 0.14 3.35 16 20 H 0.08 1.80 7.38 -2.39 -0.02 1.79 16 21 C -0.12 -2.48 7.60 71.98 0.55 -1.93 16 22 N -0.59 -12.66 2.66 -899.75 -2.40 -15.06 16 23 C 0.65 14.53 7.56 129.79 0.98 15.51 16 24 O -0.57 -13.82 7.39 19.80 0.15 -13.67 16 25 O -0.37 -7.28 8.53 -55.47 -0.47 -7.76 16 26 C 0.13 1.93 1.13 -10.79 -0.01 1.92 16 27 C -0.18 -2.66 8.37 71.98 0.60 -2.06 16 28 C -0.18 -2.67 8.37 71.98 0.60 -2.07 16 29 C -0.14 -1.35 8.85 71.98 0.64 -0.71 16 30 H 0.07 1.36 8.14 -2.39 -0.02 1.34 16 31 H 0.07 1.65 8.14 -2.38 -0.02 1.63 16 32 H 0.04 1.10 7.00 -2.39 -0.02 1.09 16 33 H 0.08 1.82 8.14 -2.39 -0.02 1.80 16 34 H 0.09 2.63 7.00 -2.39 -0.02 2.62 16 35 H 0.40 14.44 5.77 -92.70 -0.54 13.90 16 36 H -0.01 -0.81 8.14 -2.39 -0.02 -0.83 16 37 H -0.01 -0.92 8.14 -2.39 -0.02 -0.94 16 38 H 0.27 15.02 8.31 -92.71 -0.77 14.24 16 39 H 0.09 1.80 8.12 -2.38 -0.02 1.79 16 40 H 0.10 2.23 5.55 -2.39 -0.01 2.21 16 41 H 0.07 1.62 6.62 -2.39 -0.02 1.60 16 42 H 0.07 1.14 8.14 -2.38 -0.02 1.12 16 43 H 0.06 1.35 6.86 -2.39 -0.02 1.33 16 44 H 0.07 1.32 5.88 -2.38 -0.01 1.31 16 45 H 0.06 0.87 8.14 -2.39 -0.02 0.85 16 46 H 0.09 0.94 8.14 -2.39 -0.02 0.92 16 47 H 0.09 0.95 8.14 -2.39 -0.02 0.93 16 48 H 0.06 0.87 8.14 -2.38 -0.02 0.85 16 49 H 0.06 1.32 5.88 -2.39 -0.01 1.31 16 50 H 0.07 0.68 8.14 -2.39 -0.02 0.66 16 51 H 0.07 0.67 8.14 -2.38 -0.02 0.65 16 52 H 0.10 0.58 8.14 -2.39 -0.02 0.56 16 Total: -1.00 -72.18 399.15 3.09 -69.09 By element: Atomic # 1 Polarization: 27.11 SS G_CDS: 0.38 Total: 27.49 kcal Atomic # 6 Polarization: 30.46 SS G_CDS: 7.99 Total: 38.44 kcal Atomic # 7 Polarization: -118.42 SS G_CDS: -6.91 Total: -125.33 kcal Atomic # 8 Polarization: -53.44 SS G_CDS: -0.39 Total: -53.83 kcal Atomic # 14 Polarization: 42.11 SS G_CDS: 2.03 Total: 44.14 kcal Total: -72.18 3.09 -69.09 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000787359360.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.046 kcal (2) G-P(sol) polarization free energy of solvation -72.181 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -109.227 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.093 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.088 kcal (6) G-S(sol) free energy of system = (1) + (5) -106.134 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds