Wall clock time and date at job start Wed Apr 1 2020 01:32:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09002 * 109.48490 * 2 1 4 4 C 1.53042 * 109.48964 * 239.93327 * 2 1 3 5 5 N 1.46956 * 109.36474 * 181.63186 * 4 2 1 6 6 C 1.46902 * 110.99900 * 183.19084 * 5 4 2 7 7 C 1.53006 * 109.46859 * 189.99983 * 6 5 4 8 8 C 1.50698 * 109.47009 * 179.97438 * 7 6 5 9 9 O 1.20826 * 120.00175 * 359.97438 * 8 7 6 10 10 O 1.34228 * 120.00180 * 179.97438 * 8 7 6 11 11 C 1.46992 * 110.89694 * 59.32025 * 5 4 2 12 12 C 1.53056 * 109.33916 * 300.69699 * 11 5 4 13 13 N 1.46954 * 109.48914 * 120.03839 * 2 1 3 14 14 C 1.46897 * 111.00197 * 303.15985 * 13 2 1 15 15 C 1.52995 * 109.47214 * 302.24470 * 14 13 2 16 16 C 1.50701 * 109.47544 * 180.02562 * 15 14 13 17 17 O 1.21284 * 119.99448 * 359.97438 * 16 15 14 18 18 N 1.34776 * 120.00405 * 179.97438 * 16 15 14 19 19 C 1.46501 * 119.99629 * 359.97438 * 18 16 15 20 20 C 1.46493 * 119.99969 * 179.97438 * 18 16 15 21 21 C 1.50699 * 109.47126 * 90.00320 * 20 18 16 22 22 H 1.07999 * 119.99954 * 359.97438 * 21 20 18 23 23 C 1.37879 * 119.99987 * 179.97438 * 21 20 18 24 24 N 1.31513 * 119.99892 * 359.97438 * 23 21 20 25 25 Si 1.86804 * 120.00128 * 179.97438 * 23 21 20 26 26 H 1.48498 * 109.47090 * 89.99733 * 25 23 21 27 27 H 1.48493 * 109.47425 * 209.99836 * 25 23 21 28 28 H 1.48498 * 109.46837 * 329.99925 * 25 23 21 29 29 H 1.08999 * 109.47344 * 299.95790 * 1 2 3 30 30 H 1.09000 * 109.47374 * 59.95896 * 1 2 3 31 31 H 1.09003 * 109.47068 * 179.97438 * 1 2 3 32 32 H 1.09002 * 109.49013 * 301.59889 * 4 2 1 33 33 H 1.09002 * 109.49164 * 61.64320 * 4 2 1 34 34 H 1.08997 * 109.47155 * 309.99910 * 6 5 4 35 35 H 1.09001 * 109.47493 * 70.00321 * 6 5 4 36 36 H 1.09004 * 109.46820 * 299.99374 * 7 6 5 37 37 H 1.08995 * 109.47453 * 59.99760 * 7 6 5 38 38 H 0.96701 * 117.00017 * 180.02562 * 10 8 7 39 39 H 1.08999 * 109.52745 * 180.72568 * 11 5 4 40 40 H 1.09001 * 109.48186 * 60.64012 * 11 5 4 41 41 H 1.09002 * 109.48813 * 298.40763 * 12 11 5 42 42 H 1.09002 * 109.48870 * 178.36652 * 12 11 5 43 43 H 1.08994 * 109.47217 * 62.24642 * 14 13 2 44 44 H 1.09004 * 109.47164 * 182.24353 * 14 13 2 45 45 H 1.09007 * 109.46870 * 299.99983 * 15 14 13 46 46 H 1.08994 * 109.47313 * 59.99885 * 15 14 13 47 47 H 1.09004 * 109.47008 * 90.00343 * 19 18 16 48 48 H 1.09001 * 109.47182 * 209.99744 * 19 18 16 49 49 H 1.08994 * 109.47386 * 330.00318 * 19 18 16 50 50 H 1.08998 * 109.47234 * 210.00223 * 20 18 16 51 51 H 1.09001 * 109.47281 * 330.00124 * 20 18 16 52 52 H 0.97005 * 120.00200 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8936 1.0276 0.0000 4 6 2.0406 -0.7228 -1.2486 5 7 3.5096 -0.7555 -1.2262 6 6 4.0411 -1.3756 -2.4473 7 6 5.5428 -1.6189 -2.2837 8 6 6.0879 -2.2556 -3.5360 9 8 5.3509 -2.4911 -4.4641 10 8 7.3922 -2.5612 -3.6206 11 6 4.0004 -1.4491 -0.0268 12 6 3.4893 -0.7261 1.2217 13 7 2.0203 -0.6935 1.1993 14 6 1.4888 -0.0733 2.4203 15 6 1.8851 1.4040 2.4561 16 6 1.3404 2.0401 3.7090 17 8 0.6980 1.3771 4.4956 18 7 1.5672 3.3456 3.9554 19 6 2.3437 4.1461 3.0054 20 6 1.0372 3.9640 5.1730 21 6 2.0498 3.8382 6.2820 22 1 2.9936 3.3463 6.0982 23 6 1.7714 4.3510 7.5312 24 7 0.6223 4.9503 7.7548 25 14 3.0263 4.1944 8.9061 26 1 3.9241 5.3772 8.8938 27 1 2.3232 4.1202 10.2120 28 1 3.8291 2.9614 8.7054 29 1 -0.3634 0.5132 0.8903 30 1 -0.3634 0.5145 -0.8896 31 1 -0.3633 -1.0277 -0.0005 32 1 1.6544 -1.7420 -1.2623 33 1 1.7019 -0.1936 -2.1393 34 1 3.5360 -2.3256 -2.6218 35 1 3.8708 -0.7124 -3.2954 36 1 6.0479 -0.6688 -2.1092 37 1 5.7132 -2.2821 -1.4356 38 1 7.6953 -2.9679 -4.4439 39 1 5.0904 -1.4491 -0.0263 40 1 3.6364 -2.4766 -0.0265 41 1 3.8755 0.2931 1.2353 42 1 3.8278 -1.2553 2.1125 43 1 0.4022 -0.1583 2.4275 44 1 1.8987 -0.5808 3.2936 45 1 2.9719 1.4888 2.4488 46 1 1.4753 1.9114 1.5829 47 1 1.6723 4.5892 2.2697 48 1 2.8687 4.9372 3.5409 49 1 3.0675 3.5079 2.4988 50 1 0.8325 5.0181 4.9858 51 1 0.1150 3.4610 5.4642 52 1 0.4265 5.3114 8.6336 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000833628310.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:32:50 Heat of formation + Delta-G solvation = -111.729642 kcal Electronic energy + Delta-G solvation = -30538.043116 eV Core-core repulsion = 26344.809985 eV Total energy + Delta-G solvation = -4193.233130 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 341.215 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -40.82244 -40.08530 -38.82604 -36.92598 -36.36301 -34.79969 -32.94642 -32.60263 -32.12417 -30.37442 -28.23308 -27.40166 -26.33471 -25.63615 -24.23674 -23.29864 -22.62814 -21.96236 -20.56304 -19.54509 -18.64001 -18.20636 -17.35431 -16.73446 -16.60045 -16.54644 -15.96010 -15.61550 -15.37191 -15.31831 -14.97879 -14.81382 -14.57013 -14.18072 -13.82053 -13.60790 -13.48842 -13.32325 -12.69560 -12.59763 -12.31489 -12.22614 -12.15267 -12.05500 -12.03663 -11.95976 -11.89123 -11.76792 -11.66300 -11.41220 -11.18152 -11.07826 -10.95810 -10.89102 -10.75819 -10.57176 -10.41716 -10.15862 -9.62895 -8.92428 -8.71854 -8.44228 -8.33090 -7.63686 -6.04433 -4.09203 1.71561 2.46886 3.29447 3.35919 3.38999 3.45686 3.59106 3.72665 4.03729 4.18989 4.44407 4.45942 4.57522 4.77002 4.78322 4.91819 5.00529 5.06749 5.10624 5.15784 5.18970 5.23741 5.25879 5.31300 5.32618 5.45791 5.48276 5.52315 5.56046 5.61004 5.68771 5.72046 5.83725 5.90076 5.94819 6.00563 6.01455 6.11057 6.20336 6.37173 6.59240 6.63950 6.98799 7.02978 7.07563 7.39239 7.44507 7.54502 7.91862 8.23500 8.42820 8.90140 9.10520 9.55837 11.03583 Molecular weight = 341.21amu Principal moments of inertia in cm(-1) A = 0.017674 B = 0.002040 C = 0.001924 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1583.904853 B =13725.325578 C =14551.278120 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.079 3.921 3 H 0.056 0.944 4 C 0.065 3.935 5 N -0.539 5.539 6 C 0.068 3.932 7 C -0.120 4.120 8 C 0.482 3.518 9 O -0.517 6.517 10 O -0.517 6.517 11 C 0.047 3.953 12 C 0.051 3.949 13 N -0.533 5.533 14 C 0.070 3.930 15 C -0.176 4.176 16 C 0.507 3.493 17 O -0.543 6.543 18 N -0.604 5.604 19 C 0.085 3.915 20 C 0.244 3.756 21 C -0.525 4.525 22 H 0.056 0.944 23 C 0.060 3.940 24 N -0.895 5.895 25 Si 0.898 3.102 26 H -0.280 1.280 27 H -0.285 1.285 28 H -0.274 1.274 29 H 0.065 0.935 30 H 0.060 0.940 31 H 0.063 0.937 32 H 0.044 0.956 33 H 0.079 0.921 34 H 0.045 0.955 35 H 0.086 0.914 36 H 0.117 0.883 37 H 0.110 0.890 38 H 0.411 0.589 39 H 0.083 0.917 40 H 0.044 0.956 41 H 0.047 0.953 42 H 0.082 0.918 43 H 0.088 0.912 44 H 0.083 0.917 45 H 0.086 0.914 46 H 0.086 0.914 47 H 0.043 0.957 48 H 0.073 0.927 49 H 0.055 0.945 50 H 0.031 0.969 51 H 0.044 0.956 52 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.614 -12.376 -23.918 28.595 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.030 4.030 3 H 0.074 0.926 4 C -0.063 4.063 5 N -0.264 5.264 6 C -0.060 4.060 7 C -0.157 4.157 8 C 0.324 3.676 9 O -0.405 6.405 10 O -0.329 6.329 11 C -0.081 4.081 12 C -0.077 4.077 13 N -0.256 5.256 14 C -0.058 4.058 15 C -0.218 4.218 16 C 0.293 3.707 17 O -0.421 6.421 18 N -0.336 5.336 19 C -0.059 4.059 20 C 0.125 3.875 21 C -0.564 4.564 22 H 0.074 0.926 23 C -0.142 4.142 24 N -0.534 5.534 25 Si 0.726 3.274 26 H -0.207 1.207 27 H -0.211 1.211 28 H -0.199 1.199 29 H 0.084 0.916 30 H 0.079 0.921 31 H 0.082 0.918 32 H 0.063 0.937 33 H 0.098 0.902 34 H 0.063 0.937 35 H 0.104 0.896 36 H 0.135 0.865 37 H 0.128 0.872 38 H 0.270 0.730 39 H 0.101 0.899 40 H 0.062 0.938 41 H 0.066 0.934 42 H 0.101 0.899 43 H 0.106 0.894 44 H 0.102 0.898 45 H 0.104 0.896 46 H 0.104 0.896 47 H 0.061 0.939 48 H 0.092 0.908 49 H 0.074 0.926 50 H 0.049 0.951 51 H 0.062 0.938 52 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 8.817 -12.511 -23.245 27.832 hybrid contribution 1.063 -0.101 0.220 1.091 sum 9.881 -12.612 -23.025 28.050 Atomic orbital electron populations 1.21887 0.93799 1.02742 1.02333 1.21687 0.95437 0.96480 0.89405 0.92647 1.22205 0.86105 0.99986 0.97984 1.62246 1.09232 1.53306 1.01625 1.21876 0.91638 0.99089 0.93427 1.21519 0.97200 1.03305 0.93702 1.23456 0.79679 0.75034 0.89465 1.90746 1.59025 1.50655 1.40077 1.84539 1.27458 1.74858 1.46091 1.22360 0.99846 0.96330 0.89527 1.22197 0.88019 1.00041 0.97432 1.62509 1.07991 1.52943 1.02204 1.22007 1.01647 0.90493 0.91603 1.22354 1.02433 0.99034 0.97989 1.20228 0.81076 0.82339 0.87089 1.90670 1.40958 1.61673 1.48783 1.48182 1.52596 1.09151 1.23670 1.21609 0.95154 0.96358 0.92792 1.19280 0.95498 0.92907 0.79799 1.21420 1.02480 1.37186 0.95314 0.92554 1.24949 0.95598 0.95158 0.98502 1.69933 1.22292 1.38182 1.22957 0.86491 0.81165 0.78372 0.81359 1.20660 1.21068 1.19915 0.91562 0.92148 0.91807 0.93726 0.90226 0.93663 0.89553 0.86472 0.87180 0.72985 0.89859 0.93766 0.93448 0.89942 0.89393 0.89810 0.89602 0.89589 0.93863 0.90839 0.92620 0.95113 0.93841 0.92723 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.43 8.86 37.16 0.33 -1.10 16 2 C 0.08 0.78 2.01 -67.66 -0.14 0.64 16 3 H 0.06 0.59 6.45 -51.93 -0.33 0.25 16 4 C 0.07 0.57 4.86 -3.77 -0.02 0.55 16 5 N -0.54 -4.42 4.86 -234.43 -1.14 -5.56 16 6 C 0.07 0.49 4.57 -3.82 -0.02 0.47 16 7 C -0.12 -0.67 5.07 -27.88 -0.14 -0.81 16 8 C 0.48 3.36 8.33 36.00 0.30 3.66 16 9 O -0.52 -5.29 16.74 -18.75 -0.31 -5.61 16 10 O -0.52 -2.61 13.42 -39.25 -0.53 -3.14 16 11 C 0.05 0.37 4.93 -3.74 -0.02 0.36 16 12 C 0.05 0.50 5.27 -3.76 -0.02 0.48 16 13 N -0.53 -5.91 4.73 -226.50 -1.07 -6.98 16 14 C 0.07 0.96 4.12 -3.83 -0.02 0.94 16 15 C -0.18 -2.52 3.54 -27.89 -0.10 -2.62 16 16 C 0.51 10.34 7.67 -10.99 -0.08 10.26 16 17 O -0.54 -13.45 15.56 5.55 0.09 -13.36 16 18 N -0.60 -12.80 2.86 -182.96 -0.52 -13.33 16 19 C 0.09 1.35 10.24 59.85 0.61 1.96 16 20 C 0.24 6.44 5.16 -5.20 -0.03 6.41 16 21 C -0.53 -14.97 9.39 -34.44 -0.32 -15.29 16 22 H 0.06 1.60 7.81 -52.49 -0.41 1.19 16 23 C 0.06 1.72 5.46 -17.82 -0.10 1.62 16 24 N -0.89 -26.69 13.29 55.43 0.74 -25.96 16 25 Si 0.90 21.91 29.54 -169.99 -5.02 16.89 16 26 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 27 H -0.28 -6.89 7.11 56.52 0.40 -6.49 16 28 H -0.27 -6.67 7.11 56.52 0.40 -6.27 16 29 H 0.07 0.73 6.40 -51.93 -0.33 0.39 16 30 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 31 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 32 H 0.04 0.41 8.14 -51.93 -0.42 -0.01 16 33 H 0.08 0.62 8.14 -51.93 -0.42 0.20 16 34 H 0.05 0.37 8.03 -51.93 -0.42 -0.05 16 35 H 0.09 0.66 8.10 -51.93 -0.42 0.24 16 36 H 0.12 0.56 8.14 -51.93 -0.42 0.13 16 37 H 0.11 0.50 6.26 -51.93 -0.33 0.17 16 38 H 0.41 0.48 9.10 45.56 0.41 0.90 16 39 H 0.08 0.51 6.00 -51.93 -0.31 0.19 16 40 H 0.04 0.37 8.14 -51.93 -0.42 -0.05 16 41 H 0.05 0.49 6.63 -51.93 -0.34 0.14 16 42 H 0.08 0.79 8.11 -51.93 -0.42 0.37 16 43 H 0.09 1.29 6.34 -51.93 -0.33 0.96 16 44 H 0.08 1.26 8.05 -51.93 -0.42 0.84 16 45 H 0.09 1.14 5.88 -51.93 -0.31 0.83 16 46 H 0.09 1.09 6.40 -51.93 -0.33 0.76 16 47 H 0.04 0.59 8.14 -51.93 -0.42 0.17 16 48 H 0.07 1.21 8.07 -51.93 -0.42 0.79 16 49 H 0.06 0.73 6.44 -51.93 -0.33 0.39 16 50 H 0.03 0.82 8.07 -51.93 -0.42 0.40 16 51 H 0.04 1.29 7.42 -51.93 -0.39 0.90 16 52 H 0.26 7.40 8.31 -40.82 -0.34 7.06 16 LS Contribution 406.67 15.07 6.13 6.13 Total: -1.00 -35.57 406.67 -9.34 -44.91 By element: Atomic # 1 Polarization: 6.40 SS G_CDS: -7.94 Total: -1.54 kcal Atomic # 6 Polarization: 7.30 SS G_CDS: 0.24 Total: 7.55 kcal Atomic # 7 Polarization: -49.83 SS G_CDS: -2.00 Total: -51.83 kcal Atomic # 8 Polarization: -21.36 SS G_CDS: -0.75 Total: -22.11 kcal Atomic # 14 Polarization: 21.91 SS G_CDS: -5.02 Total: 16.89 kcal Total LS contribution 6.13 Total: 6.13 kcal Total: -35.57 -9.34 -44.91 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000833628310.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -66.823 kcal (2) G-P(sol) polarization free energy of solvation -35.567 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -102.390 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.339 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.907 kcal (6) G-S(sol) free energy of system = (1) + (5) -111.730 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds