Wall clock time and date at job start Wed Apr 1 2020 00:48:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09000 * 109.99614 * 2 1 4 4 C 1.54325 * 109.88027 * 238.90658 * 2 1 3 5 5 C 1.55157 * 102.94374 * 218.38782 * 4 2 1 6 6 H 1.09000 * 111.00346 * 277.43176 * 5 4 2 7 7 N 1.46495 * 111.00828 * 153.57764 * 5 4 2 8 8 C 1.34777 * 120.00234 * 155.00372 * 7 5 4 9 9 O 1.21510 * 119.99835 * 359.97438 * 8 7 5 10 10 O 1.34637 * 119.99860 * 180.02562 * 8 7 5 11 11 C 1.45201 * 116.99892 * 179.97438 * 10 8 7 12 12 C 1.53003 * 109.47261 * 59.99815 * 11 10 8 13 13 C 1.52998 * 109.47147 * 179.97438 * 11 10 8 14 14 C 1.53000 * 109.47115 * 299.99955 * 11 10 8 15 15 C 1.54918 * 101.58155 * 35.49936 * 5 4 2 16 16 N 1.47015 * 109.88603 * 121.09807 * 2 1 3 17 17 C 1.34778 * 125.64845 * 298.40418 * 16 2 1 18 18 O 1.21585 * 119.99665 * 359.97438 * 17 16 2 19 19 N 1.34777 * 120.00342 * 179.97438 * 17 16 2 20 20 C 1.46500 * 120.00145 * 179.97438 * 19 17 16 21 21 C 1.53007 * 109.47104 * 179.97438 * 20 19 17 22 22 C 1.50696 * 109.47027 * 180.02562 * 21 20 19 23 23 H 1.07997 * 120.00197 * 0.02562 * 22 21 20 24 24 C 1.37876 * 120.00128 * 180.02562 * 22 21 20 25 25 N 1.31521 * 119.99766 * 359.97438 * 24 22 21 26 26 Si 1.86795 * 120.00392 * 179.97438 * 24 22 21 27 27 H 1.48497 * 109.47125 * 89.99766 * 26 24 22 28 28 H 1.48496 * 109.47365 * 210.00133 * 26 24 22 29 29 H 1.48504 * 109.46846 * 330.00106 * 26 24 22 30 30 H 1.08997 * 109.46797 * 181.09671 * 1 2 3 31 31 H 1.09003 * 109.47122 * 301.09104 * 1 2 3 32 32 H 1.08997 * 109.47254 * 61.09277 * 1 2 3 33 33 H 1.08996 * 110.72124 * 100.02881 * 4 2 1 34 34 H 1.08993 * 110.72326 * 336.75073 * 4 2 1 35 35 H 0.97000 * 119.99509 * 334.99522 * 7 5 4 36 36 H 1.09001 * 109.47232 * 59.99489 * 12 11 10 37 37 H 1.08991 * 109.47366 * 180.02562 * 12 11 10 38 38 H 1.09001 * 109.47125 * 300.00360 * 12 11 10 39 39 H 1.08996 * 109.47204 * 59.99953 * 13 11 10 40 40 H 1.09004 * 109.47171 * 179.97438 * 13 11 10 41 41 H 1.09001 * 109.47490 * 300.00363 * 13 11 10 42 42 H 1.08997 * 109.47412 * 59.99737 * 14 11 10 43 43 H 1.08995 * 109.47423 * 180.02562 * 14 11 10 44 44 H 1.09003 * 109.46673 * 300.00172 * 14 11 10 45 45 H 1.08999 * 110.35942 * 81.82689 * 15 5 4 46 46 H 1.08996 * 110.36556 * 204.15522 * 15 5 4 47 47 H 0.97002 * 119.99502 * 0.02562 * 19 17 16 48 48 H 1.08992 * 109.46942 * 299.99887 * 20 19 17 49 49 H 1.08994 * 109.46958 * 60.00136 * 20 19 17 50 50 H 1.09000 * 109.46993 * 300.00424 * 21 20 19 51 51 H 1.09000 * 109.46628 * 60.00062 * 21 20 19 52 52 H 0.96998 * 119.99817 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9027 1.0243 0.0000 4 6 2.0548 -0.7495 -1.2428 5 6 3.2876 -1.5142 -0.6926 6 1 4.1653 -0.8688 -0.6605 7 7 3.5532 -2.7195 -1.4818 8 6 4.7965 -3.2381 -1.5223 9 8 5.6972 -2.7057 -0.9046 10 8 5.0406 -4.3455 -2.2481 11 6 6.4029 -4.8479 -2.2462 12 6 6.8165 -5.1951 -0.8147 13 6 6.4853 -6.1020 -3.1187 14 6 7.3425 -3.7762 -2.8027 15 6 2.8146 -1.8794 0.7367 16 7 2.0300 -0.7141 1.1838 17 6 1.8073 -0.3622 2.4656 18 8 1.1417 0.6233 2.7186 19 7 2.3224 -1.1027 3.4670 20 6 2.0807 -0.7199 4.8603 21 6 2.7701 -1.7199 5.7909 22 6 2.5210 -1.3264 7.2241 23 1 1.9298 -0.4510 7.4488 24 6 3.0478 -2.0840 8.2485 25 7 3.7674 -3.1504 7.9749 26 14 2.7397 -1.5960 10.0251 27 1 1.4993 -2.2523 10.5107 28 1 3.8878 -2.0260 10.8629 29 1 2.5869 -0.1215 10.1139 30 1 -0.3633 -1.0275 0.0197 31 1 -0.3633 0.5307 0.8801 32 1 -0.3633 0.4967 -0.8996 33 1 2.3529 -0.0460 -2.0201 34 1 1.3051 -1.4459 -1.6183 35 1 2.8341 -3.1443 -1.9751 36 1 6.1471 -5.9585 -0.4181 37 1 7.8393 -5.5718 -0.8131 38 1 6.7577 -4.3019 -0.1927 39 1 6.1906 -5.8550 -4.1386 40 1 7.5081 -6.4788 -3.1177 41 1 5.8160 -6.8653 -2.7219 42 1 7.2837 -2.8830 -2.1808 43 1 8.3651 -4.1534 -2.8017 44 1 7.0478 -3.5288 -3.8226 45 1 2.1886 -2.7715 0.7127 46 1 3.6717 -2.0338 1.3921 47 1 2.8538 -1.8887 3.2651 48 1 2.4817 0.2780 5.0377 49 1 1.0086 -0.7209 5.0567 50 1 2.3688 -2.7176 5.6134 51 1 3.8423 -1.7192 5.5946 52 1 4.1383 -3.6831 8.6956 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000868492115.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:48:11 Heat of formation + Delta-G solvation = -119.095592 kcal Electronic energy + Delta-G solvation = -30556.077476 eV Core-core repulsion = 26362.524934 eV Total energy + Delta-G solvation = -4193.552542 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 341.215 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.14096 -40.22909 -38.31405 -37.07635 -34.99006 -34.68438 -33.99909 -32.94870 -31.70066 -30.07519 -29.15027 -27.73046 -27.64330 -26.06248 -24.81464 -23.69692 -22.07764 -21.38705 -20.82667 -20.35569 -19.36655 -18.54137 -17.77743 -17.08623 -16.60656 -16.33361 -16.18523 -15.56254 -15.09444 -14.81042 -14.70441 -14.57550 -14.35207 -13.90804 -13.75532 -13.62099 -13.51788 -13.36794 -12.82858 -12.76959 -12.68642 -12.42735 -12.27806 -12.23145 -12.19498 -12.05794 -11.95941 -11.65691 -11.59989 -11.24704 -11.14072 -11.05565 -10.99466 -10.65884 -10.60515 -10.31336 -10.28537 -9.94078 -9.59988 -9.47085 -9.22726 -8.72913 -8.43651 -8.17475 -6.06238 -4.08838 1.78443 2.54575 2.83832 3.31686 3.37669 3.42294 3.55991 3.74782 4.12831 4.26081 4.38676 4.40085 4.45097 4.52769 4.59414 4.61586 4.87288 4.96820 5.15373 5.23035 5.25766 5.26558 5.30758 5.34004 5.38239 5.43846 5.46672 5.55351 5.56881 5.57486 5.60897 5.68277 5.92646 5.95573 6.01505 6.12153 6.17397 6.24612 6.30042 6.42881 6.48595 6.80041 7.03171 7.07186 7.27888 7.59260 7.66605 7.92878 8.08890 8.27737 8.39962 8.95199 9.01131 9.55686 11.05459 Molecular weight = 341.21amu Principal moments of inertia in cm(-1) A = 0.009358 B = 0.002530 C = 0.002045 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2991.443350 B =11064.842773 C =13685.899965 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.157 3.843 3 H 0.078 0.922 4 C -0.134 4.134 5 C 0.152 3.848 6 H 0.113 0.887 7 N -0.701 5.701 8 C 0.651 3.349 9 O -0.560 6.560 10 O -0.365 6.365 11 C 0.137 3.863 12 C -0.186 4.186 13 C -0.141 4.141 14 C -0.184 4.184 15 C 0.088 3.912 16 N -0.637 5.637 17 C 0.720 3.280 18 O -0.591 6.591 19 N -0.736 5.736 20 C 0.140 3.860 21 C 0.013 3.987 22 C -0.520 4.520 23 H 0.060 0.940 24 C 0.058 3.942 25 N -0.894 5.894 26 Si 0.897 3.103 27 H -0.280 1.280 28 H -0.286 1.286 29 H -0.272 1.272 30 H 0.055 0.945 31 H 0.075 0.925 32 H 0.062 0.938 33 H 0.091 0.909 34 H 0.086 0.914 35 H 0.408 0.592 36 H 0.061 0.939 37 H 0.071 0.929 38 H 0.089 0.911 39 H 0.065 0.935 40 H 0.081 0.919 41 H 0.067 0.933 42 H 0.088 0.912 43 H 0.071 0.929 44 H 0.058 0.942 45 H 0.070 0.930 46 H 0.082 0.918 47 H 0.392 0.608 48 H 0.054 0.946 49 H 0.054 0.946 50 H 0.021 0.979 51 H 0.022 0.978 52 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.418 -4.080 -28.616 29.006 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.053 3.947 3 H 0.096 0.904 4 C -0.172 4.172 5 C 0.047 3.953 6 H 0.131 0.869 7 N -0.360 5.360 8 C 0.404 3.596 9 O -0.449 6.449 10 O -0.280 6.280 11 C 0.100 3.900 12 C -0.243 4.243 13 C -0.198 4.198 14 C -0.241 4.241 15 C -0.037 4.037 16 N -0.378 5.378 17 C 0.422 3.578 18 O -0.469 6.469 19 N -0.390 5.390 20 C 0.017 3.983 21 C -0.024 4.024 22 C -0.558 4.558 23 H 0.078 0.922 24 C -0.143 4.143 25 N -0.533 5.533 26 Si 0.725 3.275 27 H -0.206 1.206 28 H -0.212 1.212 29 H -0.197 1.197 30 H 0.074 0.926 31 H 0.094 0.906 32 H 0.080 0.920 33 H 0.110 0.890 34 H 0.104 0.896 35 H 0.243 0.757 36 H 0.080 0.920 37 H 0.090 0.910 38 H 0.108 0.892 39 H 0.084 0.916 40 H 0.099 0.901 41 H 0.086 0.914 42 H 0.107 0.893 43 H 0.089 0.911 44 H 0.077 0.923 45 H 0.088 0.912 46 H 0.100 0.900 47 H 0.226 0.774 48 H 0.073 0.927 49 H 0.073 0.927 50 H 0.040 0.960 51 H 0.040 0.960 52 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 2.536 -3.251 -27.915 28.218 hybrid contribution -0.071 -0.595 0.713 0.932 sum 2.465 -3.847 -27.203 27.584 Atomic orbital electron populations 1.22165 0.94546 1.02330 1.03059 1.21269 0.94799 0.96114 0.82541 0.90373 1.23067 0.96600 0.99874 0.97667 1.22054 0.99191 0.84723 0.89349 0.86907 1.44550 1.08507 1.29918 1.53026 1.18096 0.83723 0.79511 0.78250 1.90949 1.43676 1.62679 1.47550 1.86291 1.34379 1.41079 1.66235 1.22103 0.77106 0.93821 0.96953 1.22534 1.02048 1.04040 0.95665 1.21866 1.03059 0.95315 0.99552 1.22520 0.99212 1.00596 1.01750 1.22610 0.95900 0.89624 0.95580 1.47557 1.56434 1.29609 1.04155 1.15530 0.80301 0.83020 0.78977 1.90879 1.45072 1.28599 1.82360 1.45592 1.56163 1.30597 1.06606 1.21608 1.00309 0.99760 0.76581 1.19322 0.95939 0.93821 0.93361 1.21046 1.32912 1.11504 0.90383 0.92205 1.25000 0.94972 0.94924 0.99442 1.69964 1.34574 1.16306 1.32484 0.86507 0.77743 0.78964 0.84310 1.20586 1.21194 1.19717 0.92625 0.90572 0.91951 0.89034 0.89575 0.75707 0.91972 0.91029 0.89182 0.91557 0.90064 0.91383 0.89302 0.91054 0.92270 0.91189 0.90000 0.77394 0.92721 0.92742 0.96038 0.95971 0.92884 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.72 9.09 37.16 0.34 -1.38 16 2 C 0.16 1.67 3.46 -66.96 -0.23 1.44 16 3 H 0.08 0.88 8.14 -51.93 -0.42 0.46 16 4 C -0.13 -0.90 6.12 -24.90 -0.15 -1.06 16 5 C 0.15 1.31 3.42 -65.78 -0.23 1.09 16 6 H 0.11 1.14 7.54 -51.93 -0.39 0.75 16 7 N -0.70 -5.49 5.20 -56.63 -0.29 -5.79 16 8 C 0.65 6.83 8.06 54.06 0.44 7.27 16 9 O -0.56 -7.38 11.52 -19.28 -0.22 -7.60 16 10 O -0.37 -3.51 9.94 -40.32 -0.40 -3.91 16 11 C 0.14 1.15 1.13 -90.62 -0.10 1.05 16 12 C -0.19 -1.70 8.37 37.16 0.31 -1.39 16 13 C -0.14 -0.83 8.85 37.16 0.33 -0.50 16 14 C -0.18 -1.50 8.37 37.16 0.31 -1.19 16 15 C 0.09 0.97 6.27 -2.52 -0.02 0.96 16 16 N -0.64 -8.66 3.06 -168.69 -0.52 -9.18 16 17 C 0.72 13.18 8.28 -86.92 -0.72 12.46 16 18 O -0.59 -12.79 15.39 5.29 0.08 -12.71 16 19 N -0.74 -13.87 5.52 -65.23 -0.36 -14.23 16 20 C 0.14 3.11 5.61 -4.04 -0.02 3.09 16 21 C 0.01 0.33 5.09 -27.88 -0.14 0.19 16 22 C -0.52 -14.67 9.11 -34.44 -0.31 -14.99 16 23 H 0.06 1.65 7.74 -52.49 -0.41 1.25 16 24 C 0.06 1.66 5.46 -17.82 -0.10 1.56 16 25 N -0.89 -26.52 13.29 55.43 0.74 -25.78 16 26 Si 0.90 21.69 29.54 -169.99 -5.02 16.66 16 27 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 28 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 29 H -0.27 -6.48 7.11 56.52 0.40 -6.08 16 30 H 0.05 0.57 8.14 -51.93 -0.42 0.14 16 31 H 0.08 1.07 6.90 -51.93 -0.36 0.71 16 32 H 0.06 0.50 8.14 -51.93 -0.42 0.07 16 33 H 0.09 0.48 8.14 -51.93 -0.42 0.05 16 34 H 0.09 0.45 7.71 -51.93 -0.40 0.05 16 35 H 0.41 2.20 8.68 -40.82 -0.35 1.85 16 36 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 37 H 0.07 0.54 8.14 -51.93 -0.42 0.11 16 38 H 0.09 1.06 5.88 -51.93 -0.31 0.75 16 39 H 0.07 0.36 8.14 -51.93 -0.42 -0.07 16 40 H 0.08 0.36 8.14 -51.93 -0.42 -0.06 16 41 H 0.07 0.40 8.14 -51.93 -0.42 -0.03 16 42 H 0.09 0.94 5.88 -51.93 -0.31 0.63 16 43 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 44 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 45 H 0.07 0.72 8.14 -51.93 -0.42 0.29 16 46 H 0.08 1.01 7.30 -51.93 -0.38 0.63 16 47 H 0.39 6.69 6.95 -40.82 -0.28 6.41 16 48 H 0.05 1.26 8.14 -51.93 -0.42 0.84 16 49 H 0.05 1.25 8.14 -51.93 -0.42 0.82 16 50 H 0.02 0.57 8.14 -51.93 -0.42 0.14 16 51 H 0.02 0.59 8.14 -51.93 -0.42 0.17 16 52 H 0.26 7.32 8.31 -40.82 -0.34 6.98 16 LS Contribution 414.64 15.07 6.25 6.25 Total: -1.00 -34.16 414.64 -9.13 -43.29 By element: Atomic # 1 Polarization: 13.48 SS G_CDS: -9.08 Total: 4.39 kcal Atomic # 6 Polarization: 8.89 SS G_CDS: -0.30 Total: 8.59 kcal Atomic # 7 Polarization: -54.54 SS G_CDS: -0.43 Total: -54.97 kcal Atomic # 8 Polarization: -23.68 SS G_CDS: -0.54 Total: -24.22 kcal Atomic # 14 Polarization: 21.69 SS G_CDS: -5.02 Total: 16.66 kcal Total LS contribution 6.25 Total: 6.25 kcal Total: -34.16 -9.13 -43.29 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000868492115.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -75.803 kcal (2) G-P(sol) polarization free energy of solvation -34.162 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -109.965 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.130 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.293 kcal (6) G-S(sol) free energy of system = (1) + (5) -119.096 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds