Wall clock time and date at job start Wed Apr 1 2020 00:48:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09000 * 109.99614 * 2 1 4 4 C 1.54325 * 109.88027 * 238.90658 * 2 1 3 5 5 C 1.55157 * 102.94374 * 218.38782 * 4 2 1 6 6 H 1.09000 * 111.00346 * 277.43176 * 5 4 2 7 7 N 1.46495 * 111.00828 * 153.57764 * 5 4 2 8 8 C 1.34777 * 120.00234 * 155.00372 * 7 5 4 9 9 O 1.21510 * 119.99835 * 359.97438 * 8 7 5 10 10 O 1.34637 * 119.99860 * 180.02562 * 8 7 5 11 11 C 1.45201 * 116.99892 * 179.97438 * 10 8 7 12 12 C 1.53003 * 109.47261 * 59.99815 * 11 10 8 13 13 C 1.52998 * 109.47147 * 179.97438 * 11 10 8 14 14 C 1.53000 * 109.47115 * 299.99955 * 11 10 8 15 15 C 1.54918 * 101.58155 * 35.49936 * 5 4 2 16 16 N 1.47015 * 109.88603 * 121.09807 * 2 1 3 17 17 C 1.34778 * 125.64845 * 298.40418 * 16 2 1 18 18 O 1.21585 * 119.99665 * 359.97438 * 17 16 2 19 19 N 1.34777 * 120.00342 * 179.97438 * 17 16 2 20 20 C 1.46500 * 120.00145 * 179.97438 * 19 17 16 21 21 C 1.53007 * 109.47104 * 179.97438 * 20 19 17 22 22 C 1.50696 * 109.47027 * 180.02562 * 21 20 19 23 23 H 1.07997 * 120.00197 * 0.02562 * 22 21 20 24 24 C 1.37876 * 120.00128 * 180.02562 * 22 21 20 25 25 N 1.31521 * 119.99766 * 359.97438 * 24 22 21 26 26 Si 1.86795 * 120.00392 * 179.97438 * 24 22 21 27 27 H 1.48497 * 109.47125 * 89.99766 * 26 24 22 28 28 H 1.48496 * 109.47365 * 210.00133 * 26 24 22 29 29 H 1.48504 * 109.46846 * 330.00106 * 26 24 22 30 30 H 1.08997 * 109.46797 * 181.09671 * 1 2 3 31 31 H 1.09003 * 109.47122 * 301.09104 * 1 2 3 32 32 H 1.08997 * 109.47254 * 61.09277 * 1 2 3 33 33 H 1.08996 * 110.72124 * 100.02881 * 4 2 1 34 34 H 1.08993 * 110.72326 * 336.75073 * 4 2 1 35 35 H 0.97000 * 119.99509 * 334.99522 * 7 5 4 36 36 H 1.09001 * 109.47232 * 59.99489 * 12 11 10 37 37 H 1.08991 * 109.47366 * 180.02562 * 12 11 10 38 38 H 1.09001 * 109.47125 * 300.00360 * 12 11 10 39 39 H 1.08996 * 109.47204 * 59.99953 * 13 11 10 40 40 H 1.09004 * 109.47171 * 179.97438 * 13 11 10 41 41 H 1.09001 * 109.47490 * 300.00363 * 13 11 10 42 42 H 1.08997 * 109.47412 * 59.99737 * 14 11 10 43 43 H 1.08995 * 109.47423 * 180.02562 * 14 11 10 44 44 H 1.09003 * 109.46673 * 300.00172 * 14 11 10 45 45 H 1.08999 * 110.35942 * 81.82689 * 15 5 4 46 46 H 1.08996 * 110.36556 * 204.15522 * 15 5 4 47 47 H 0.97002 * 119.99502 * 0.02562 * 19 17 16 48 48 H 1.08992 * 109.46942 * 299.99887 * 20 19 17 49 49 H 1.08994 * 109.46958 * 60.00136 * 20 19 17 50 50 H 1.09000 * 109.46993 * 300.00424 * 21 20 19 51 51 H 1.09000 * 109.46628 * 60.00062 * 21 20 19 52 52 H 0.96998 * 119.99817 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9027 1.0243 0.0000 4 6 2.0548 -0.7495 -1.2428 5 6 3.2876 -1.5142 -0.6926 6 1 4.1653 -0.8688 -0.6605 7 7 3.5532 -2.7195 -1.4818 8 6 4.7965 -3.2381 -1.5223 9 8 5.6972 -2.7057 -0.9046 10 8 5.0406 -4.3455 -2.2481 11 6 6.4029 -4.8479 -2.2462 12 6 6.8165 -5.1951 -0.8147 13 6 6.4853 -6.1020 -3.1187 14 6 7.3425 -3.7762 -2.8027 15 6 2.8146 -1.8794 0.7367 16 7 2.0300 -0.7141 1.1838 17 6 1.8073 -0.3622 2.4656 18 8 1.1417 0.6233 2.7186 19 7 2.3224 -1.1027 3.4670 20 6 2.0807 -0.7199 4.8603 21 6 2.7701 -1.7199 5.7909 22 6 2.5210 -1.3264 7.2241 23 1 1.9298 -0.4510 7.4488 24 6 3.0478 -2.0840 8.2485 25 7 3.7674 -3.1504 7.9749 26 14 2.7397 -1.5960 10.0251 27 1 1.4993 -2.2523 10.5107 28 1 3.8878 -2.0260 10.8629 29 1 2.5869 -0.1215 10.1139 30 1 -0.3633 -1.0275 0.0197 31 1 -0.3633 0.5307 0.8801 32 1 -0.3633 0.4967 -0.8996 33 1 2.3529 -0.0460 -2.0201 34 1 1.3051 -1.4459 -1.6183 35 1 2.8341 -3.1443 -1.9751 36 1 6.1471 -5.9585 -0.4181 37 1 7.8393 -5.5718 -0.8131 38 1 6.7577 -4.3019 -0.1927 39 1 6.1906 -5.8550 -4.1386 40 1 7.5081 -6.4788 -3.1177 41 1 5.8160 -6.8653 -2.7219 42 1 7.2837 -2.8830 -2.1808 43 1 8.3651 -4.1534 -2.8017 44 1 7.0478 -3.5288 -3.8226 45 1 2.1886 -2.7715 0.7127 46 1 3.6717 -2.0338 1.3921 47 1 2.8538 -1.8887 3.2651 48 1 2.4817 0.2780 5.0377 49 1 1.0086 -0.7209 5.0567 50 1 2.3688 -2.7176 5.6134 51 1 3.8423 -1.7192 5.5946 52 1 4.1383 -3.6831 8.6956 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000868492115.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:48:09 Heat of formation + Delta-G solvation = -142.983385 kcal Electronic energy + Delta-G solvation = -30557.113328 eV Core-core repulsion = 26362.524934 eV Total energy + Delta-G solvation = -4194.588394 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 341.215 amu Computer time = 1.48 seconds Orbital eigenvalues (eV) -41.95979 -41.37068 -39.39908 -37.98403 -36.60841 -35.67798 -34.89935 -34.74016 -32.96452 -31.16032 -30.72770 -28.33545 -28.26106 -27.02124 -26.65440 -24.65648 -23.38280 -22.57993 -22.06537 -21.15645 -20.63392 -19.34384 -19.00847 -18.49146 -17.88516 -17.42660 -17.09452 -16.79264 -16.52454 -16.34513 -15.75825 -15.61565 -15.34925 -15.11368 -14.86621 -14.78857 -14.51130 -14.40007 -14.26195 -13.92833 -13.44543 -13.31573 -13.24616 -13.15803 -12.96178 -12.93110 -12.86930 -12.83136 -12.70119 -12.53242 -12.39785 -12.30153 -12.26959 -12.01924 -11.85563 -11.66917 -11.50672 -11.36619 -11.19332 -11.10630 -10.62116 -10.35825 -10.18242 -9.54101 -8.25245 -6.36147 1.04134 1.40604 1.41889 1.52980 1.61927 1.74233 2.10452 2.39704 2.90876 3.09314 3.22951 3.38019 3.48986 3.77909 3.82936 3.93182 3.97769 4.07417 4.17222 4.37937 4.42873 4.48116 4.50376 4.53885 4.64287 4.65785 4.73200 4.77972 4.80068 4.82613 4.85962 4.87459 4.91809 4.93069 5.09784 5.15700 5.23972 5.26245 5.31396 5.32762 5.39799 5.47099 5.49631 5.55177 5.60001 5.77096 5.99006 6.14856 6.38900 6.76832 6.93193 7.33197 7.34344 7.52752 8.86925 Molecular weight = 341.21amu Principal moments of inertia in cm(-1) A = 0.009358 B = 0.002530 C = 0.002045 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2991.443350 B =11064.842773 C =13685.899965 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.146 3.854 3 H 0.070 0.930 4 C -0.112 4.112 5 C 0.161 3.839 6 H 0.098 0.902 7 N -0.684 5.684 8 C 0.646 3.354 9 O -0.591 6.591 10 O -0.364 6.364 11 C 0.128 3.872 12 C -0.184 4.184 13 C -0.136 4.136 14 C -0.179 4.179 15 C 0.084 3.916 16 N -0.631 5.631 17 C 0.716 3.284 18 O -0.628 6.628 19 N -0.736 5.736 20 C 0.161 3.839 21 C 0.025 3.975 22 C -0.546 4.546 23 H 0.060 0.940 24 C 0.006 3.994 25 N -0.927 5.927 26 Si 0.968 3.032 27 H -0.271 1.271 28 H -0.279 1.279 29 H -0.266 1.266 30 H 0.060 0.940 31 H 0.035 0.965 32 H 0.094 0.906 33 H 0.119 0.881 34 H 0.114 0.886 35 H 0.423 0.577 36 H 0.060 0.940 37 H 0.087 0.913 38 H 0.059 0.941 39 H 0.074 0.926 40 H 0.098 0.902 41 H 0.068 0.932 42 H 0.061 0.939 43 H 0.086 0.914 44 H 0.067 0.933 45 H 0.084 0.916 46 H 0.063 0.937 47 H 0.401 0.599 48 H 0.044 0.956 49 H 0.046 0.954 50 H 0.007 0.993 51 H 0.004 0.996 52 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.988 -4.782 -30.698 31.132 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C 0.043 3.957 3 H 0.088 0.912 4 C -0.150 4.150 5 C 0.056 3.944 6 H 0.116 0.884 7 N -0.344 5.344 8 C 0.399 3.601 9 O -0.482 6.482 10 O -0.279 6.279 11 C 0.092 3.908 12 C -0.241 4.241 13 C -0.193 4.193 14 C -0.237 4.237 15 C -0.041 4.041 16 N -0.369 5.369 17 C 0.418 3.582 18 O -0.509 6.509 19 N -0.390 5.390 20 C 0.037 3.963 21 C -0.012 4.012 22 C -0.584 4.584 23 H 0.079 0.921 24 C -0.193 4.193 25 N -0.567 5.567 26 Si 0.792 3.208 27 H -0.196 1.196 28 H -0.205 1.205 29 H -0.190 1.190 30 H 0.079 0.921 31 H 0.054 0.946 32 H 0.113 0.887 33 H 0.137 0.863 34 H 0.132 0.868 35 H 0.262 0.738 36 H 0.079 0.921 37 H 0.106 0.894 38 H 0.078 0.922 39 H 0.093 0.907 40 H 0.117 0.883 41 H 0.087 0.913 42 H 0.080 0.920 43 H 0.105 0.895 44 H 0.086 0.914 45 H 0.102 0.898 46 H 0.082 0.918 47 H 0.236 0.764 48 H 0.062 0.938 49 H 0.065 0.935 50 H 0.025 0.975 51 H 0.023 0.977 52 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 2.094 -3.986 -30.079 30.414 hybrid contribution 0.102 -0.408 1.299 1.366 sum 2.196 -4.395 -28.780 29.196 Atomic orbital electron populations 1.22102 0.94191 1.02442 1.02719 1.21614 0.95165 0.96239 0.82702 0.91155 1.23034 0.95750 1.00140 0.96035 1.21847 0.99545 0.84883 0.88143 0.88353 1.44378 1.08170 1.29437 1.52416 1.18336 0.84076 0.79606 0.78053 1.90950 1.44880 1.63549 1.48784 1.86305 1.35184 1.40540 1.65845 1.22367 0.76646 0.94953 0.96877 1.22505 1.03125 1.02565 0.95931 1.21881 1.04286 0.93820 0.99273 1.22468 1.00208 0.99475 1.01503 1.22776 0.95241 0.89176 0.96864 1.47540 1.55812 1.30316 1.03281 1.15629 0.79939 0.82452 0.80210 1.90849 1.46636 1.30109 1.83349 1.45336 1.56754 1.31226 1.05701 1.21091 0.99112 0.98102 0.77983 1.19114 0.94893 0.93782 0.93456 1.21447 1.33276 1.11823 0.91879 0.92127 1.25911 0.94484 0.94747 1.04147 1.70074 1.35278 1.17267 1.34082 0.85404 0.77973 0.78900 0.78527 1.19603 1.20480 1.19011 0.92073 0.94579 0.88731 0.86296 0.86811 0.73843 0.92112 0.89442 0.92160 0.90712 0.88311 0.91282 0.92015 0.89494 0.91411 0.89762 0.91812 0.76426 0.93804 0.93529 0.97502 0.97747 0.92526 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.05 9.09 71.98 0.65 -2.40 16 2 C 0.15 2.88 3.46 45.34 0.16 3.04 16 3 H 0.07 1.52 8.14 -2.39 -0.02 1.50 16 4 C -0.11 -1.13 6.12 31.78 0.19 -0.94 16 5 C 0.16 2.53 3.42 46.39 0.16 2.68 16 6 H 0.10 1.92 7.54 -2.39 -0.02 1.90 16 7 N -0.68 -9.35 5.20 -563.49 -2.93 -12.28 16 8 C 0.65 13.06 8.06 129.79 1.05 14.11 16 9 O -0.59 -15.88 11.52 19.81 0.23 -15.65 16 10 O -0.36 -6.55 9.94 -55.47 -0.55 -7.10 16 11 C 0.13 2.01 1.13 -10.79 -0.01 2.00 16 12 C -0.18 -3.33 8.37 71.98 0.60 -2.73 16 13 C -0.14 -1.29 8.85 71.98 0.64 -0.65 16 14 C -0.18 -2.77 8.37 71.98 0.60 -2.16 16 15 C 0.08 1.80 6.27 86.86 0.54 2.35 16 16 N -0.63 -17.03 3.06 -805.89 -2.47 -19.50 16 17 C 0.72 26.89 8.28 179.05 1.48 28.37 16 18 O -0.63 -28.09 15.39 -3.98 -0.06 -28.15 16 19 N -0.74 -28.72 5.52 -478.54 -2.64 -31.36 16 20 C 0.16 7.44 5.61 86.38 0.48 7.93 16 21 C 0.03 1.33 5.09 29.85 0.15 1.48 16 22 C -0.55 -31.43 9.11 25.60 0.23 -31.20 16 23 H 0.06 3.40 7.74 -2.91 -0.02 3.38 16 24 C 0.01 0.33 5.46 84.65 0.46 0.79 16 25 N -0.93 -55.71 13.29 21.45 0.28 -55.42 16 26 Si 0.97 44.55 29.54 68.60 2.03 46.58 16 27 H -0.27 -12.01 7.11 99.48 0.71 -11.31 16 28 H -0.28 -12.48 7.11 99.48 0.71 -11.78 16 29 H -0.27 -11.86 7.11 99.48 0.71 -11.16 16 30 H 0.06 1.11 8.14 -2.39 -0.02 1.10 16 31 H 0.03 1.01 6.90 -2.39 -0.02 0.99 16 32 H 0.09 1.22 8.14 -2.39 -0.02 1.20 16 33 H 0.12 0.71 8.14 -2.39 -0.02 0.69 16 34 H 0.11 0.62 7.71 -2.39 -0.02 0.60 16 35 H 0.42 3.23 8.68 -92.71 -0.80 2.43 16 36 H 0.06 1.08 8.14 -2.39 -0.02 1.06 16 37 H 0.09 1.24 8.14 -2.39 -0.02 1.22 16 38 H 0.06 1.48 5.88 -2.39 -0.01 1.46 16 39 H 0.07 0.60 8.14 -2.39 -0.02 0.58 16 40 H 0.10 0.60 8.14 -2.38 -0.02 0.58 16 41 H 0.07 0.66 8.14 -2.39 -0.02 0.64 16 42 H 0.06 1.32 5.88 -2.39 -0.01 1.31 16 43 H 0.09 1.02 8.14 -2.39 -0.02 1.00 16 44 H 0.07 0.90 8.14 -2.39 -0.02 0.88 16 45 H 0.08 1.60 8.14 -2.39 -0.02 1.58 16 46 H 0.06 1.62 7.30 -2.39 -0.02 1.60 16 47 H 0.40 14.21 6.95 -92.71 -0.64 13.57 16 48 H 0.04 2.10 8.14 -2.39 -0.02 2.08 16 49 H 0.05 2.21 8.14 -2.39 -0.02 2.19 16 50 H 0.01 0.37 8.14 -2.39 -0.02 0.35 16 51 H 0.00 0.23 8.14 -2.39 -0.02 0.22 16 52 H 0.27 14.96 8.31 -92.71 -0.77 14.19 16 Total: -1.00 -76.92 414.64 0.76 -76.16 By element: Atomic # 1 Polarization: 24.60 SS G_CDS: -0.53 Total: 24.07 kcal Atomic # 6 Polarization: 15.27 SS G_CDS: 7.40 Total: 22.67 kcal Atomic # 7 Polarization: -110.81 SS G_CDS: -7.76 Total: -118.57 kcal Atomic # 8 Polarization: -50.52 SS G_CDS: -0.38 Total: -50.91 kcal Atomic # 14 Polarization: 44.55 SS G_CDS: 2.03 Total: 46.58 kcal Total: -76.92 0.76 -76.16 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000868492115.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -66.820 kcal (2) G-P(sol) polarization free energy of solvation -76.920 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -143.739 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.756 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.164 kcal (6) G-S(sol) free energy of system = (1) + (5) -142.983 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.48 seconds