Wall clock time and date at job start Wed Apr 1 2020 00:48:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08997 * 109.99644 * 2 1 4 4 C 1.54333 * 109.77490 * 121.15692 * 2 1 3 5 5 C 1.55159 * 103.02009 * 97.49951 * 4 2 1 6 6 H 1.08997 * 111.00439 * 277.23353 * 5 4 2 7 7 N 1.46501 * 111.00883 * 153.37812 * 5 4 2 8 8 C 1.34769 * 120.00349 * 161.35019 * 7 5 4 9 9 O 1.21509 * 119.99720 * 0.02562 * 8 7 5 10 10 O 1.34632 * 120.00220 * 180.02562 * 8 7 5 11 11 C 1.45201 * 117.00117 * 179.97438 * 10 8 7 12 12 C 1.53004 * 109.47077 * 60.00117 * 11 10 8 13 13 C 1.53003 * 109.47130 * 179.97438 * 11 10 8 14 14 C 1.52998 * 109.47110 * 300.00149 * 11 10 8 15 15 C 1.54919 * 101.57796 * 35.30538 * 5 4 2 16 16 N 1.47021 * 109.88553 * 238.90030 * 2 1 3 17 17 C 1.34777 * 125.64866 * 59.55735 * 16 2 1 18 18 O 1.21592 * 119.99797 * 359.72194 * 17 16 2 19 19 N 1.34774 * 119.99902 * 179.71911 * 17 16 2 20 20 C 1.46499 * 119.99966 * 180.02562 * 19 17 16 21 21 C 1.53002 * 109.47337 * 179.97438 * 20 19 17 22 22 C 1.50696 * 109.46997 * 179.97438 * 21 20 19 23 23 H 1.07999 * 120.00319 * 0.02562 * 22 21 20 24 24 C 1.37885 * 119.99717 * 180.02562 * 22 21 20 25 25 N 1.31516 * 119.99913 * 180.02562 * 24 22 21 26 26 Si 1.86798 * 119.99766 * 0.02562 * 24 22 21 27 27 H 1.48500 * 109.47353 * 269.99586 * 26 24 22 28 28 H 1.48501 * 109.47293 * 30.00037 * 26 24 22 29 29 H 1.48504 * 109.46680 * 149.99835 * 26 24 22 30 30 H 1.08996 * 109.46824 * 179.64365 * 1 2 3 31 31 H 1.09001 * 109.47219 * 299.64942 * 1 2 3 32 32 H 1.09001 * 109.46940 * 59.64869 * 1 2 3 33 33 H 1.09001 * 110.85576 * 339.03405 * 4 2 1 34 34 H 1.08997 * 110.66723 * 215.87745 * 4 2 1 35 35 H 0.97003 * 119.99366 * 341.35441 * 7 5 4 36 36 H 1.09002 * 109.46860 * 59.99797 * 12 11 10 37 37 H 1.09000 * 109.47208 * 179.97438 * 12 11 10 38 38 H 1.09001 * 109.46904 * 299.99839 * 12 11 10 39 39 H 1.09003 * 109.46778 * 59.99947 * 13 11 10 40 40 H 1.09005 * 109.47061 * 179.97438 * 13 11 10 41 41 H 1.09002 * 109.47383 * 300.00556 * 13 11 10 42 42 H 1.08997 * 109.46944 * 59.99668 * 14 11 10 43 43 H 1.09000 * 109.46723 * 180.02562 * 14 11 10 44 44 H 1.08997 * 109.46888 * 299.99403 * 14 11 10 45 45 H 1.09000 * 110.35941 * 204.15161 * 15 5 4 46 46 H 1.08997 * 110.36558 * 81.83719 * 15 5 4 47 47 H 0.96999 * 120.00050 * 359.97438 * 19 17 16 48 48 H 1.09005 * 109.47136 * 59.99929 * 20 19 17 49 49 H 1.09002 * 109.47352 * 299.99897 * 20 19 17 50 50 H 1.09005 * 109.46767 * 60.00068 * 21 20 19 51 51 H 1.09002 * 109.47113 * 300.00408 * 21 20 19 52 52 H 0.97001 * 119.99646 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9028 1.0243 0.0000 4 6 2.0522 -0.7514 1.2428 5 6 2.3561 -2.1696 0.6918 6 1 1.4522 -2.7777 0.6582 7 7 3.3999 -2.8275 1.4817 8 6 3.5488 -4.1655 1.4205 9 8 2.8175 -4.8263 0.7099 10 8 4.5077 -4.7701 2.1468 11 6 4.6098 -6.2140 2.0322 12 6 4.8968 -6.5910 0.5774 13 6 5.7475 -6.7171 2.9229 14 6 3.2931 -6.8551 2.4749 15 6 2.8614 -1.8465 -0.7366 16 7 2.0301 -0.7141 -1.1838 17 6 1.7755 -0.3847 -2.4657 18 8 1.0730 0.5750 -2.7186 19 7 2.2995 -1.1189 -3.4670 20 6 2.0232 -0.7604 -4.8603 21 6 2.7322 -1.7465 -5.7909 22 6 2.4474 -1.3781 -7.2241 23 1 1.8235 -0.5257 -7.4488 24 6 2.9835 -2.1293 -8.2486 25 7 2.7354 -1.8075 -9.4994 26 14 4.0621 -3.6040 -7.8598 27 1 5.4795 -3.1705 -7.7692 28 1 3.6420 -4.1969 -6.5647 29 1 3.9221 -4.6171 -8.9365 30 1 -0.3633 -1.0276 -0.0064 31 1 -0.3634 0.5084 0.8931 32 1 -0.3633 0.5193 -0.8868 33 1 1.2884 -0.7949 2.0193 34 1 2.9599 -0.2826 1.6226 35 1 3.9839 -2.2999 2.0487 36 1 5.8349 -6.1342 0.2620 37 1 4.9739 -7.6749 0.4914 38 1 4.0865 -6.2325 -0.0575 39 1 5.5435 -6.4485 3.9594 40 1 5.8239 -7.8011 2.8371 41 1 6.6855 -6.2603 2.6071 42 1 2.4829 -6.4965 1.8401 43 1 3.3699 -7.9390 2.3893 44 1 3.0887 -6.5865 3.5113 45 1 2.7179 -2.7049 -1.3929 46 1 3.9124 -1.5589 -0.7112 47 1 2.8602 -1.8842 -3.2652 48 1 2.3873 0.2484 -5.0550 49 1 0.9487 -0.7998 -5.0394 50 1 2.3685 -2.7554 -5.5963 51 1 3.8067 -1.7067 -5.6117 52 1 3.1128 -2.3358 -10.2201 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000868492117.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:48:37 Heat of formation + Delta-G solvation = -139.851076 kcal Electronic energy + Delta-G solvation = -30763.578702 eV Core-core repulsion = 26569.126135 eV Total energy + Delta-G solvation = -4194.452567 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 341.215 amu Computer time = 1.53 seconds Orbital eigenvalues (eV) -41.96886 -41.38324 -39.42110 -37.98357 -36.65324 -35.67137 -34.87975 -34.72966 -33.11187 -31.43383 -30.72424 -28.33613 -28.26368 -27.04894 -26.72408 -24.70842 -23.22353 -22.61863 -21.86617 -21.17280 -20.67313 -19.30790 -19.15211 -18.94792 -17.74230 -17.27400 -17.04588 -16.97053 -16.42769 -16.24797 -15.75791 -15.52032 -15.37476 -15.22026 -15.10702 -14.75865 -14.58910 -14.49687 -14.38545 -14.04844 -13.44108 -13.38694 -13.30303 -13.22680 -13.03583 -13.00090 -12.88437 -12.83216 -12.56949 -12.39572 -12.32912 -12.21145 -12.19559 -12.08016 -11.79932 -11.73048 -11.55277 -11.36535 -11.24091 -11.10650 -10.80745 -10.35718 -10.21366 -9.55637 -8.31981 -6.38879 1.04641 1.36131 1.38879 1.50117 1.59056 1.74898 2.09790 2.34470 2.88543 3.02686 3.21843 3.36884 3.48988 3.77789 3.82806 3.95462 3.97619 4.10194 4.13981 4.29624 4.38617 4.41245 4.49954 4.54733 4.64237 4.66766 4.67781 4.72169 4.78557 4.79991 4.86386 4.90645 4.91509 4.94013 5.03650 5.11168 5.15103 5.26442 5.29542 5.31185 5.36955 5.38742 5.41618 5.48881 5.60141 5.64206 5.97931 6.21249 6.39650 6.67705 6.93028 7.25334 7.34910 7.52685 8.84788 Molecular weight = 341.21amu Principal moments of inertia in cm(-1) A = 0.008494 B = 0.002947 C = 0.002256 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3295.491078 B = 9498.986238 C =12405.705129 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.148 3.852 3 H 0.078 0.922 4 C -0.112 4.112 5 C 0.163 3.837 6 H 0.096 0.904 7 N -0.684 5.684 8 C 0.645 3.355 9 O -0.591 6.591 10 O -0.365 6.365 11 C 0.128 3.872 12 C -0.184 4.184 13 C -0.136 4.136 14 C -0.180 4.180 15 C 0.083 3.917 16 N -0.630 5.630 17 C 0.716 3.284 18 O -0.628 6.628 19 N -0.734 5.734 20 C 0.166 3.834 21 C -0.011 4.011 22 C -0.538 4.538 23 H 0.032 0.968 24 C 0.007 3.993 25 N -0.948 5.948 26 Si 0.956 3.044 27 H -0.263 1.263 28 H -0.243 1.243 29 H -0.284 1.284 30 H 0.053 0.947 31 H 0.094 0.906 32 H 0.036 0.964 33 H 0.119 0.881 34 H 0.114 0.886 35 H 0.423 0.577 36 H 0.061 0.939 37 H 0.086 0.914 38 H 0.061 0.939 39 H 0.073 0.927 40 H 0.098 0.902 41 H 0.069 0.931 42 H 0.061 0.939 43 H 0.086 0.914 44 H 0.066 0.934 45 H 0.067 0.933 46 H 0.086 0.914 47 H 0.404 0.596 48 H 0.045 0.955 49 H 0.041 0.959 50 H 0.032 0.968 51 H 0.033 0.967 52 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.861 -8.689 36.018 37.681 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.045 3.955 3 H 0.096 0.904 4 C -0.150 4.150 5 C 0.057 3.943 6 H 0.114 0.886 7 N -0.345 5.345 8 C 0.399 3.601 9 O -0.481 6.481 10 O -0.279 6.279 11 C 0.092 3.908 12 C -0.241 4.241 13 C -0.193 4.193 14 C -0.237 4.237 15 C -0.041 4.041 16 N -0.369 5.369 17 C 0.418 3.582 18 O -0.509 6.509 19 N -0.390 5.390 20 C 0.041 3.959 21 C -0.049 4.049 22 C -0.576 4.576 23 H 0.050 0.950 24 C -0.191 4.191 25 N -0.588 5.588 26 Si 0.779 3.221 27 H -0.188 1.188 28 H -0.167 1.167 29 H -0.209 1.209 30 H 0.072 0.928 31 H 0.113 0.887 32 H 0.056 0.944 33 H 0.138 0.862 34 H 0.132 0.868 35 H 0.262 0.738 36 H 0.080 0.920 37 H 0.105 0.895 38 H 0.080 0.920 39 H 0.092 0.908 40 H 0.116 0.884 41 H 0.088 0.912 42 H 0.080 0.920 43 H 0.104 0.896 44 H 0.085 0.915 45 H 0.085 0.915 46 H 0.104 0.896 47 H 0.239 0.761 48 H 0.063 0.937 49 H 0.060 0.940 50 H 0.050 0.950 51 H 0.052 0.948 52 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 6.046 -8.417 35.251 36.743 hybrid contribution 0.513 -0.479 -0.862 1.111 sum 6.560 -8.896 34.389 36.122 Atomic orbital electron populations 1.22170 0.94964 1.02101 1.02805 1.21595 0.94707 0.96509 0.82739 0.90367 1.23018 1.04766 0.91185 0.96077 1.21831 0.89809 0.94283 0.88344 0.88613 1.44408 1.37792 1.03328 1.48968 1.18334 0.79470 0.83677 0.78620 1.90951 1.48186 1.64580 1.44365 1.86304 1.51880 1.25665 1.64081 1.22356 0.97681 0.73823 0.96945 1.22505 1.02499 1.03481 0.95611 1.21885 0.95885 1.02361 0.99183 1.22473 0.96953 1.02312 1.01988 1.22806 0.95766 0.88612 0.96909 1.47530 1.53828 1.32321 1.03207 1.15627 0.80142 0.82236 0.80241 1.90870 1.44823 1.31900 1.83335 1.45245 1.54932 1.33363 1.05423 1.20892 0.98870 0.98240 0.77877 1.19632 0.96625 0.95612 0.93002 1.21213 1.31576 1.13887 0.90917 0.95011 1.26030 0.97635 1.01003 0.94391 1.70067 1.46690 1.41907 1.00159 0.85577 0.79145 0.78309 0.79101 1.18766 1.16674 1.20944 0.92770 0.88741 0.94436 0.86245 0.86751 0.73809 0.91979 0.89537 0.92001 0.90811 0.88375 0.91209 0.91957 0.89553 0.91519 0.91494 0.89621 0.76086 0.93705 0.94017 0.95009 0.94826 0.92251 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.24 9.05 71.98 0.65 -2.59 16 2 C 0.15 2.69 3.51 45.35 0.16 2.85 16 3 H 0.08 1.48 8.14 -2.39 -0.02 1.46 16 4 C -0.11 -0.96 6.11 31.79 0.19 -0.76 16 5 C 0.16 2.22 3.32 46.39 0.15 2.38 16 6 H 0.10 1.67 7.73 -2.39 -0.02 1.65 16 7 N -0.68 -8.02 5.23 -563.49 -2.95 -10.97 16 8 C 0.65 11.80 8.05 129.79 1.05 12.84 16 9 O -0.59 -14.62 11.63 19.81 0.23 -14.39 16 10 O -0.36 -5.94 9.94 -55.41 -0.55 -6.49 16 11 C 0.13 1.82 1.13 -10.79 -0.01 1.81 16 12 C -0.18 -2.96 8.37 71.98 0.60 -2.36 16 13 C -0.14 -1.12 8.85 71.98 0.64 -0.48 16 14 C -0.18 -2.57 8.37 71.98 0.60 -1.96 16 15 C 0.08 1.59 6.27 86.86 0.54 2.13 16 16 N -0.63 -15.74 3.08 -805.86 -2.48 -18.22 16 17 C 0.72 25.44 8.27 179.06 1.48 26.93 16 18 O -0.63 -27.45 15.23 -4.01 -0.06 -27.51 16 19 N -0.73 -26.25 5.52 -478.52 -2.64 -28.89 16 20 C 0.17 7.26 5.61 86.38 0.48 7.75 16 21 C -0.01 -0.51 4.16 29.85 0.12 -0.39 16 22 C -0.54 -31.59 9.66 25.60 0.25 -31.34 16 23 H 0.03 2.08 7.99 -2.91 -0.02 2.05 16 24 C 0.01 0.40 5.47 84.66 0.46 0.86 16 25 N -0.95 -60.03 13.96 21.45 0.30 -59.73 16 26 Si 0.96 43.70 27.47 68.60 1.88 45.59 16 27 H -0.26 -11.41 7.11 99.48 0.71 -10.70 16 28 H -0.24 -10.17 6.54 99.48 0.65 -9.52 16 29 H -0.28 -12.78 7.11 99.48 0.71 -12.07 16 30 H 0.05 1.09 8.14 -2.39 -0.02 1.07 16 31 H 0.09 1.26 8.14 -2.39 -0.02 1.24 16 32 H 0.04 1.07 6.73 -2.39 -0.02 1.05 16 33 H 0.12 0.55 7.83 -2.39 -0.02 0.53 16 34 H 0.11 0.41 7.99 -2.39 -0.02 0.39 16 35 H 0.42 2.42 8.62 -92.71 -0.80 1.62 16 36 H 0.06 0.96 8.14 -2.39 -0.02 0.94 16 37 H 0.09 1.08 8.14 -2.39 -0.02 1.06 16 38 H 0.06 1.37 5.88 -2.39 -0.01 1.36 16 39 H 0.07 0.52 8.14 -2.39 -0.02 0.50 16 40 H 0.10 0.49 8.14 -2.38 -0.02 0.47 16 41 H 0.07 0.56 8.14 -2.39 -0.02 0.54 16 42 H 0.06 1.25 5.88 -2.39 -0.01 1.24 16 43 H 0.09 0.93 8.14 -2.39 -0.02 0.91 16 44 H 0.07 0.83 8.14 -2.39 -0.02 0.81 16 45 H 0.07 1.49 7.30 -2.39 -0.02 1.48 16 46 H 0.09 1.41 8.14 -2.39 -0.02 1.39 16 47 H 0.40 12.28 6.95 -92.71 -0.64 11.64 16 48 H 0.04 2.09 8.14 -2.38 -0.02 2.07 16 49 H 0.04 1.97 8.14 -2.39 -0.02 1.95 16 50 H 0.03 1.44 7.20 -2.38 -0.02 1.42 16 51 H 0.03 1.48 7.57 -2.39 -0.02 1.46 16 52 H 0.27 15.75 8.31 -92.71 -0.77 14.98 16 Total: -1.00 -80.52 410.84 0.53 -79.99 By element: Atomic # 1 Polarization: 23.55 SS G_CDS: -0.58 Total: 22.97 kcal Atomic # 6 Polarization: 10.27 SS G_CDS: 7.38 Total: 17.65 kcal Atomic # 7 Polarization: -110.04 SS G_CDS: -7.77 Total: -117.81 kcal Atomic # 8 Polarization: -48.01 SS G_CDS: -0.38 Total: -48.39 kcal Atomic # 14 Polarization: 43.70 SS G_CDS: 1.88 Total: 45.59 kcal Total: -80.52 0.53 -79.99 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000868492117.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -59.864 kcal (2) G-P(sol) polarization free energy of solvation -80.520 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -140.384 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.533 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.987 kcal (6) G-S(sol) free energy of system = (1) + (5) -139.851 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.53 seconds