Wall clock time and date at job start Wed Apr 1 2020 01:25:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09008 * 110.91216 * 2 1 4 4 C 1.55115 * 111.16564 * 236.07043 * 2 1 3 5 5 N 1.47426 * 104.94182 * 205.13392 * 4 2 1 6 6 C 1.34782 * 125.64501 * 203.96748 * 5 4 2 7 7 O 1.21589 * 119.99704 * 180.02562 * 6 5 4 8 8 N 1.34772 * 120.00081 * 0.03649 * 6 5 4 9 9 C 1.46500 * 119.99930 * 180.02562 * 8 6 5 10 10 C 1.50703 * 109.47156 * 179.97438 * 9 8 6 11 11 H 1.07998 * 120.00041 * 0.02562 * 10 9 8 12 12 C 1.37881 * 120.00142 * 179.97438 * 10 9 8 13 13 N 1.31513 * 119.99874 * 180.02562 * 12 10 9 14 14 Si 1.86797 * 119.99742 * 0.02562 * 12 10 9 15 15 H 1.48494 * 109.47576 * 89.99605 * 14 12 10 16 16 H 1.48501 * 109.46975 * 209.99670 * 14 12 10 17 17 H 1.48499 * 109.47368 * 329.99497 * 14 12 10 18 18 C 1.47020 * 108.70535 * 23.99775 * 5 4 2 19 19 C 1.54325 * 107.27123 * 358.94502 * 18 5 4 20 20 H 1.09000 * 110.72152 * 96.34581 * 19 18 5 21 21 C 1.52992 * 110.71849 * 219.44179 * 19 18 5 22 22 N 1.46499 * 109.47267 * 291.15629 * 21 19 18 23 23 C 1.34784 * 119.99971 * 180.02562 * 22 21 19 24 24 O 1.21511 * 119.99590 * 359.72740 * 23 22 21 25 25 O 1.34632 * 119.99600 * 179.97438 * 23 22 21 26 26 C 1.45208 * 116.99497 * 180.02562 * 25 23 22 27 27 C 1.52996 * 109.47185 * 60.00244 * 26 25 23 28 28 C 1.53006 * 109.46513 * 180.02562 * 26 25 23 29 29 C 1.52995 * 109.47070 * 299.99898 * 26 25 23 30 30 H 1.09004 * 109.47479 * 296.10562 * 1 2 3 31 31 H 1.09003 * 109.47115 * 56.09873 * 1 2 3 32 32 H 1.08995 * 109.47057 * 176.10103 * 1 2 3 33 33 H 1.08996 * 110.42612 * 86.20119 * 4 2 1 34 34 H 1.09008 * 110.29937 * 323.99664 * 4 2 1 35 35 H 0.97003 * 120.00226 * 359.97438 * 8 6 5 36 36 H 1.09000 * 109.47324 * 299.99798 * 9 8 6 37 37 H 1.09001 * 109.47295 * 60.00015 * 9 8 6 38 38 H 0.97002 * 119.99626 * 180.02562 * 13 12 10 39 39 H 1.08995 * 109.88152 * 239.52670 * 18 5 4 40 40 H 1.09005 * 110.00971 * 118.43400 * 18 5 4 41 41 H 1.09004 * 109.47330 * 171.15533 * 21 19 18 42 42 H 1.09005 * 109.47124 * 51.15737 * 21 19 18 43 43 H 0.96999 * 119.99984 * 359.97438 * 22 21 19 44 44 H 1.09011 * 109.46913 * 59.99811 * 27 26 25 45 45 H 1.08999 * 109.46952 * 179.97438 * 27 26 25 46 46 H 1.08996 * 109.47301 * 300.00116 * 27 26 25 47 47 H 1.08998 * 109.47261 * 60.00003 * 28 26 25 48 48 H 1.08999 * 109.46703 * 179.97438 * 28 26 25 49 49 H 1.08994 * 109.47350 * 299.99691 * 28 26 25 50 50 H 1.09005 * 109.47242 * 60.00239 * 29 26 25 51 51 H 1.08999 * 109.47112 * 180.02562 * 29 26 25 52 52 H 1.08998 * 109.47402 * 300.00425 * 29 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9191 1.0183 0.0000 4 6 2.0901 -0.8074 -1.2002 5 7 3.4299 -1.2474 -0.7703 6 6 4.4512 -1.5689 -1.5889 7 8 5.5171 -1.9210 -1.1216 8 7 4.2911 -1.5001 -2.9253 9 6 5.4011 -1.8502 -3.8150 10 6 4.9650 -1.6911 -5.2488 11 1 3.9616 -1.3616 -5.4746 12 6 5.8475 -1.9650 -6.2722 13 7 5.4671 -1.8256 -7.5234 14 14 7.5832 -2.5341 -5.8815 15 1 7.6105 -4.0162 -5.7946 16 1 8.5051 -2.0841 -6.9552 17 1 8.0141 -1.9542 -4.5840 18 6 3.4672 -1.2779 0.6991 19 6 2.0861 -0.8078 1.2024 20 1 1.4450 -1.6612 1.4231 21 6 2.2349 0.0878 2.4338 22 7 2.7029 -0.7140 3.5671 23 6 2.9062 -0.1324 4.7658 24 8 2.7061 1.0580 4.9052 25 8 3.3358 -0.8694 5.8074 26 6 3.5326 -0.1767 7.0684 27 6 2.2094 0.4435 7.5215 28 6 4.0193 -1.1702 8.1253 29 6 4.5771 0.9263 6.8867 30 1 -0.3634 0.4522 0.9228 31 1 -0.3633 0.5732 -0.8530 32 1 -0.3633 -1.0252 -0.0699 33 1 2.1643 -0.1734 -2.0837 34 1 1.4553 -1.6696 -1.4051 35 1 3.4407 -1.2195 -3.2981 36 1 6.2470 -1.1920 -3.6169 37 1 5.6962 -2.8845 -3.6381 38 1 6.0878 -2.0187 -8.2433 39 1 4.2434 -0.6055 1.0643 40 1 3.6625 -2.2926 1.0462 41 1 1.2705 0.5335 2.6777 42 1 2.9571 0.8768 2.2242 43 1 2.8656 -1.6637 3.4550 44 1 1.4652 -0.3425 7.6510 45 1 2.3571 0.9630 8.4683 46 1 1.8631 1.1512 6.7684 47 1 4.9620 -1.6117 7.8022 48 1 4.1675 -0.6502 9.0717 49 1 3.2755 -1.9563 8.2549 50 1 4.2309 1.6342 6.1335 51 1 4.7252 1.4460 7.8333 52 1 5.5198 0.4845 6.5638 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000875539998.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:25:34 Heat of formation + Delta-G solvation = -119.506042 kcal Electronic energy + Delta-G solvation = -30182.683455 eV Core-core repulsion = 25989.113115 eV Total energy + Delta-G solvation = -4193.570340 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 341.215 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.06872 -40.12420 -38.32241 -37.37603 -35.13503 -34.29643 -34.24708 -32.86932 -32.25726 -30.50462 -28.03049 -27.76922 -27.71345 -26.43810 -25.92440 -23.11485 -22.10441 -21.49651 -20.82663 -20.05830 -19.55815 -18.51479 -17.92731 -16.99649 -16.67257 -16.40357 -16.27820 -15.50756 -15.30501 -14.95616 -14.90674 -14.53689 -14.44130 -14.23568 -13.84351 -13.46559 -13.44941 -13.24706 -12.96921 -12.84505 -12.75706 -12.43437 -12.41596 -12.27440 -12.25398 -12.24541 -12.17897 -11.81386 -11.76800 -11.66478 -11.22072 -11.10021 -10.96098 -10.92732 -10.75228 -10.68466 -10.32386 -9.95763 -9.60720 -9.49213 -9.45479 -8.77551 -8.54941 -7.96758 -6.20484 -4.22340 1.86553 2.57729 3.00422 3.28466 3.35418 3.44381 3.73654 3.77557 4.17396 4.21411 4.34050 4.34906 4.35775 4.40593 4.54630 4.70027 4.83839 4.98435 5.03833 5.10796 5.15161 5.16876 5.18386 5.20197 5.32445 5.33401 5.38579 5.41328 5.46004 5.50685 5.59435 5.62929 5.63509 5.71906 5.78973 5.87456 5.88586 5.94350 6.04157 6.08162 6.23816 6.38076 6.78842 7.10690 7.11832 7.26575 7.39711 7.56270 8.09998 8.26007 8.66148 8.79576 9.18343 9.40979 10.91412 Molecular weight = 341.21amu Principal moments of inertia in cm(-1) A = 0.017948 B = 0.001982 C = 0.001828 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1559.707024 B =14122.325430 C =15315.341712 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.092 4.092 3 H 0.091 0.909 4 C 0.105 3.895 5 N -0.644 5.644 6 C 0.713 3.287 7 O -0.599 6.599 8 N -0.720 5.720 9 C 0.238 3.762 10 C -0.542 4.542 11 H 0.079 0.921 12 C 0.078 3.922 13 N -0.893 5.893 14 Si 0.877 3.123 15 H -0.273 1.273 16 H -0.284 1.284 17 H -0.260 1.260 18 C 0.133 3.867 19 C -0.112 4.112 20 H 0.096 0.904 21 C 0.150 3.850 22 N -0.711 5.711 23 C 0.650 3.350 24 O -0.569 6.569 25 O -0.365 6.365 26 C 0.136 3.864 27 C -0.183 4.183 28 C -0.141 4.141 29 C -0.184 4.184 30 H 0.061 0.939 31 H 0.063 0.937 32 H 0.060 0.940 33 H 0.078 0.922 34 H 0.068 0.932 35 H 0.392 0.608 36 H 0.023 0.977 37 H 0.019 0.981 38 H 0.267 0.733 39 H 0.066 0.934 40 H 0.064 0.936 41 H 0.077 0.923 42 H 0.076 0.924 43 H 0.408 0.592 44 H 0.059 0.941 45 H 0.070 0.930 46 H 0.087 0.913 47 H 0.067 0.933 48 H 0.080 0.920 49 H 0.066 0.934 50 H 0.088 0.912 51 H 0.070 0.930 52 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.631 3.714 28.938 31.408 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.112 4.112 3 H 0.109 0.891 4 C -0.019 4.019 5 N -0.384 5.384 6 C 0.415 3.585 7 O -0.479 6.479 8 N -0.372 5.372 9 C 0.115 3.885 10 C -0.580 4.580 11 H 0.097 0.903 12 C -0.126 4.126 13 N -0.530 5.530 14 Si 0.703 3.297 15 H -0.198 1.198 16 H -0.209 1.209 17 H -0.184 1.184 18 C 0.009 3.991 19 C -0.131 4.131 20 H 0.114 0.886 21 C 0.027 3.973 22 N -0.370 5.370 23 C 0.404 3.596 24 O -0.458 6.458 25 O -0.280 6.280 26 C 0.100 3.900 27 C -0.240 4.240 28 C -0.198 4.198 29 C -0.242 4.242 30 H 0.080 0.920 31 H 0.082 0.918 32 H 0.079 0.921 33 H 0.096 0.904 34 H 0.086 0.914 35 H 0.226 0.774 36 H 0.041 0.959 37 H 0.037 0.963 38 H 0.077 0.923 39 H 0.085 0.915 40 H 0.082 0.918 41 H 0.095 0.905 42 H 0.094 0.906 43 H 0.243 0.757 44 H 0.078 0.922 45 H 0.089 0.911 46 H 0.106 0.894 47 H 0.086 0.914 48 H 0.099 0.901 49 H 0.085 0.915 50 H 0.107 0.893 51 H 0.089 0.911 52 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -10.735 4.002 29.124 31.297 hybrid contribution 0.560 -0.596 -0.213 0.845 sum -10.175 3.406 28.911 30.838 Atomic orbital electron populations 1.21733 0.93321 1.02510 1.02442 1.22345 0.96294 0.99563 0.93021 0.89092 1.22352 0.84002 0.98073 0.97458 1.47500 1.12046 1.72994 1.05838 1.15631 0.82465 0.78782 0.81650 1.90874 1.25739 1.55525 1.75728 1.45415 1.17831 1.70866 1.03083 1.19380 0.85182 0.95456 0.88454 1.21078 1.01208 1.47744 0.87962 0.90323 1.24776 0.98725 0.94410 0.94694 1.69881 1.36222 1.48163 0.98741 0.86813 0.84268 0.79731 0.78867 1.19845 1.20923 1.18441 1.21709 0.95912 1.01374 0.80122 1.22607 0.97301 0.99123 0.94092 0.88621 1.21364 1.00528 0.93064 0.82338 1.44753 1.71127 1.13540 1.07577 1.18068 0.76599 0.83757 0.81216 1.90906 1.56780 1.14219 1.83896 1.86310 1.79786 1.42452 1.19428 1.22077 0.96139 0.92374 0.79449 1.22512 0.96222 1.02173 1.03095 1.21867 1.02265 0.98985 0.96731 1.22524 0.98387 0.99209 1.04040 0.92034 0.91771 0.92102 0.90402 0.91376 0.77421 0.95880 0.96335 0.92277 0.91546 0.91767 0.90471 0.90568 0.75741 0.92208 0.91138 0.89388 0.91368 0.90129 0.91471 0.89323 0.91150 0.92055 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.84 9.32 37.16 0.35 -0.50 16 2 C -0.09 -0.72 3.10 -88.36 -0.27 -0.99 16 3 H 0.09 0.73 8.05 -51.92 -0.42 0.31 16 4 C 0.10 1.13 6.06 -2.42 -0.01 1.11 16 5 N -0.64 -9.54 3.33 -176.10 -0.59 -10.12 16 6 C 0.71 14.53 8.49 -86.92 -0.74 13.79 16 7 O -0.60 -14.60 16.67 5.29 0.09 -14.51 16 8 N -0.72 -15.20 5.51 -66.41 -0.37 -15.57 16 9 C 0.24 5.99 4.50 -5.19 -0.02 5.97 16 10 C -0.54 -14.98 9.83 -34.44 -0.34 -15.32 16 11 H 0.08 2.25 7.84 -52.49 -0.41 1.84 16 12 C 0.08 2.21 5.47 -17.82 -0.10 2.11 16 13 N -0.89 -26.52 13.96 55.43 0.77 -25.75 16 14 Si 0.88 21.64 27.47 -169.99 -4.67 16.97 16 15 H -0.27 -6.63 7.11 56.52 0.40 -6.23 16 16 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 17 H -0.26 -6.42 6.54 56.52 0.37 -6.05 16 18 C 0.13 1.56 6.27 -3.06 -0.02 1.54 16 19 C -0.11 -0.86 2.45 -88.79 -0.22 -1.08 16 20 H 0.10 0.61 8.04 -51.93 -0.42 0.19 16 21 C 0.15 1.18 5.00 -4.05 -0.02 1.16 16 22 N -0.71 -5.99 5.43 -65.28 -0.35 -6.35 16 23 C 0.65 6.95 8.06 54.06 0.44 7.39 16 24 O -0.57 -7.23 11.88 -19.28 -0.23 -7.46 16 25 O -0.37 -3.64 9.94 -40.30 -0.40 -4.04 16 26 C 0.14 1.12 1.13 -90.62 -0.10 1.02 16 27 C -0.18 -1.41 8.37 37.16 0.31 -1.10 16 28 C -0.14 -0.83 8.85 37.16 0.33 -0.50 16 29 C -0.18 -1.55 8.37 37.16 0.31 -1.24 16 30 H 0.06 0.32 8.14 -51.93 -0.42 -0.10 16 31 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 32 H 0.06 0.35 8.08 -51.93 -0.42 -0.07 16 33 H 0.08 0.85 7.30 -51.93 -0.38 0.47 16 34 H 0.07 0.68 7.99 -51.92 -0.41 0.26 16 35 H 0.39 7.32 6.80 -40.82 -0.28 7.04 16 36 H 0.02 0.62 7.20 -51.93 -0.37 0.24 16 37 H 0.02 0.49 7.57 -51.93 -0.39 0.10 16 38 H 0.27 7.43 8.31 -40.82 -0.34 7.10 16 39 H 0.07 0.86 7.73 -51.93 -0.40 0.46 16 40 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 41 H 0.08 0.57 8.14 -51.93 -0.42 0.15 16 42 H 0.08 0.70 8.00 -51.93 -0.42 0.29 16 43 H 0.41 2.81 8.51 -40.82 -0.35 2.46 16 44 H 0.06 0.43 8.14 -51.92 -0.42 0.01 16 45 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 46 H 0.09 0.87 5.89 -51.93 -0.31 0.57 16 47 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 48 H 0.08 0.33 8.14 -51.93 -0.42 -0.09 16 49 H 0.07 0.37 8.14 -51.93 -0.42 -0.05 16 50 H 0.09 0.95 5.87 -51.93 -0.30 0.64 16 51 H 0.07 0.46 8.14 -51.93 -0.42 0.03 16 52 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 LS Contribution 412.93 15.07 6.22 6.22 Total: -1.00 -35.02 412.93 -8.73 -43.75 By element: Atomic # 1 Polarization: 12.59 SS G_CDS: -9.10 Total: 3.49 kcal Atomic # 6 Polarization: 13.49 SS G_CDS: -0.11 Total: 13.37 kcal Atomic # 7 Polarization: -57.26 SS G_CDS: -0.53 Total: -57.79 kcal Atomic # 8 Polarization: -25.47 SS G_CDS: -0.54 Total: -26.01 kcal Atomic # 14 Polarization: 21.64 SS G_CDS: -4.67 Total: 16.97 kcal Total LS contribution 6.22 Total: 6.22 kcal Total: -35.02 -8.73 -43.75 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000875539998.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -75.753 kcal (2) G-P(sol) polarization free energy of solvation -35.023 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -110.777 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.729 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.753 kcal (6) G-S(sol) free energy of system = (1) + (5) -119.506 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds