Wall clock time and date at job start Wed Apr 1 2020 01:25:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09008 * 110.91216 * 2 1 4 4 C 1.55115 * 111.16564 * 236.07043 * 2 1 3 5 5 N 1.47426 * 104.94182 * 205.13392 * 4 2 1 6 6 C 1.34782 * 125.64501 * 203.96748 * 5 4 2 7 7 O 1.21589 * 119.99704 * 180.02562 * 6 5 4 8 8 N 1.34772 * 120.00081 * 0.03649 * 6 5 4 9 9 C 1.46500 * 119.99930 * 180.02562 * 8 6 5 10 10 C 1.50703 * 109.47156 * 179.97438 * 9 8 6 11 11 H 1.07998 * 120.00041 * 0.02562 * 10 9 8 12 12 C 1.37881 * 120.00142 * 179.97438 * 10 9 8 13 13 N 1.31513 * 119.99874 * 180.02562 * 12 10 9 14 14 Si 1.86797 * 119.99742 * 0.02562 * 12 10 9 15 15 H 1.48494 * 109.47576 * 89.99605 * 14 12 10 16 16 H 1.48501 * 109.46975 * 209.99670 * 14 12 10 17 17 H 1.48499 * 109.47368 * 329.99497 * 14 12 10 18 18 C 1.47020 * 108.70535 * 23.99775 * 5 4 2 19 19 C 1.54325 * 107.27123 * 358.94502 * 18 5 4 20 20 H 1.09000 * 110.72152 * 96.34581 * 19 18 5 21 21 C 1.52992 * 110.71849 * 219.44179 * 19 18 5 22 22 N 1.46499 * 109.47267 * 291.15629 * 21 19 18 23 23 C 1.34784 * 119.99971 * 180.02562 * 22 21 19 24 24 O 1.21511 * 119.99590 * 359.72740 * 23 22 21 25 25 O 1.34632 * 119.99600 * 179.97438 * 23 22 21 26 26 C 1.45208 * 116.99497 * 180.02562 * 25 23 22 27 27 C 1.52996 * 109.47185 * 60.00244 * 26 25 23 28 28 C 1.53006 * 109.46513 * 180.02562 * 26 25 23 29 29 C 1.52995 * 109.47070 * 299.99898 * 26 25 23 30 30 H 1.09004 * 109.47479 * 296.10562 * 1 2 3 31 31 H 1.09003 * 109.47115 * 56.09873 * 1 2 3 32 32 H 1.08995 * 109.47057 * 176.10103 * 1 2 3 33 33 H 1.08996 * 110.42612 * 86.20119 * 4 2 1 34 34 H 1.09008 * 110.29937 * 323.99664 * 4 2 1 35 35 H 0.97003 * 120.00226 * 359.97438 * 8 6 5 36 36 H 1.09000 * 109.47324 * 299.99798 * 9 8 6 37 37 H 1.09001 * 109.47295 * 60.00015 * 9 8 6 38 38 H 0.97002 * 119.99626 * 180.02562 * 13 12 10 39 39 H 1.08995 * 109.88152 * 239.52670 * 18 5 4 40 40 H 1.09005 * 110.00971 * 118.43400 * 18 5 4 41 41 H 1.09004 * 109.47330 * 171.15533 * 21 19 18 42 42 H 1.09005 * 109.47124 * 51.15737 * 21 19 18 43 43 H 0.96999 * 119.99984 * 359.97438 * 22 21 19 44 44 H 1.09011 * 109.46913 * 59.99811 * 27 26 25 45 45 H 1.08999 * 109.46952 * 179.97438 * 27 26 25 46 46 H 1.08996 * 109.47301 * 300.00116 * 27 26 25 47 47 H 1.08998 * 109.47261 * 60.00003 * 28 26 25 48 48 H 1.08999 * 109.46703 * 179.97438 * 28 26 25 49 49 H 1.08994 * 109.47350 * 299.99691 * 28 26 25 50 50 H 1.09005 * 109.47242 * 60.00239 * 29 26 25 51 51 H 1.08999 * 109.47112 * 180.02562 * 29 26 25 52 52 H 1.08998 * 109.47402 * 300.00425 * 29 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9191 1.0183 0.0000 4 6 2.0901 -0.8074 -1.2002 5 7 3.4299 -1.2474 -0.7703 6 6 4.4512 -1.5689 -1.5889 7 8 5.5171 -1.9210 -1.1216 8 7 4.2911 -1.5001 -2.9253 9 6 5.4011 -1.8502 -3.8150 10 6 4.9650 -1.6911 -5.2488 11 1 3.9616 -1.3616 -5.4746 12 6 5.8475 -1.9650 -6.2722 13 7 5.4671 -1.8256 -7.5234 14 14 7.5832 -2.5341 -5.8815 15 1 7.6105 -4.0162 -5.7946 16 1 8.5051 -2.0841 -6.9552 17 1 8.0141 -1.9542 -4.5840 18 6 3.4672 -1.2779 0.6991 19 6 2.0861 -0.8078 1.2024 20 1 1.4450 -1.6612 1.4231 21 6 2.2349 0.0878 2.4338 22 7 2.7029 -0.7140 3.5671 23 6 2.9062 -0.1324 4.7658 24 8 2.7061 1.0580 4.9052 25 8 3.3358 -0.8694 5.8074 26 6 3.5326 -0.1767 7.0684 27 6 2.2094 0.4435 7.5215 28 6 4.0193 -1.1702 8.1253 29 6 4.5771 0.9263 6.8867 30 1 -0.3634 0.4522 0.9228 31 1 -0.3633 0.5732 -0.8530 32 1 -0.3633 -1.0252 -0.0699 33 1 2.1643 -0.1734 -2.0837 34 1 1.4553 -1.6696 -1.4051 35 1 3.4407 -1.2195 -3.2981 36 1 6.2470 -1.1920 -3.6169 37 1 5.6962 -2.8845 -3.6381 38 1 6.0878 -2.0187 -8.2433 39 1 4.2434 -0.6055 1.0643 40 1 3.6625 -2.2926 1.0462 41 1 1.2705 0.5335 2.6777 42 1 2.9571 0.8768 2.2242 43 1 2.8656 -1.6637 3.4550 44 1 1.4652 -0.3425 7.6510 45 1 2.3571 0.9630 8.4683 46 1 1.8631 1.1512 6.7684 47 1 4.9620 -1.6117 7.8022 48 1 4.1675 -0.6502 9.0717 49 1 3.2755 -1.9563 8.2549 50 1 4.2309 1.6342 6.1335 51 1 4.7252 1.4460 7.8333 52 1 5.5198 0.4845 6.5638 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000875539998.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:25:33 Heat of formation + Delta-G solvation = -144.893245 kcal Electronic energy + Delta-G solvation = -30183.784327 eV Core-core repulsion = 25989.113115 eV Total energy + Delta-G solvation = -4194.671212 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 341.215 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -41.84086 -41.33688 -39.48269 -38.23109 -36.19253 -36.00188 -34.96732 -34.43181 -33.69669 -31.38112 -29.84891 -28.34445 -28.28060 -27.24889 -27.02775 -24.29012 -23.55364 -22.48684 -21.58442 -21.08488 -20.77352 -19.64550 -19.10224 -18.31023 -17.80940 -17.54030 -17.21325 -16.84909 -16.46873 -16.26064 -15.89200 -15.62074 -15.37824 -15.19285 -14.99445 -14.73123 -14.47509 -14.41824 -14.15044 -13.97148 -13.75054 -13.43657 -13.34152 -13.21910 -13.03615 -13.02038 -12.89352 -12.84489 -12.72053 -12.56455 -12.45744 -12.32035 -11.96379 -11.93499 -11.78368 -11.65749 -11.59494 -11.37132 -11.27097 -11.09276 -10.92207 -10.22096 -10.16215 -9.45759 -8.40324 -6.47103 1.18108 1.32828 1.34720 1.48286 1.66706 1.77886 2.13733 2.28348 2.95078 3.09243 3.17203 3.42094 3.50632 3.64985 3.76915 3.81920 3.96706 4.14674 4.24308 4.30869 4.48340 4.52741 4.61995 4.62886 4.63641 4.64874 4.70187 4.76811 4.78497 4.82040 4.87434 4.89565 4.90110 5.02620 5.03215 5.09177 5.13893 5.20283 5.25039 5.29851 5.33031 5.34769 5.38265 5.50943 5.51877 5.59884 6.00088 6.21087 6.38857 6.54052 7.06615 7.18128 7.34364 7.60134 8.74220 Molecular weight = 341.21amu Principal moments of inertia in cm(-1) A = 0.017948 B = 0.001982 C = 0.001828 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1559.707024 B =14122.325430 C =15315.341712 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.082 4.082 3 H 0.089 0.911 4 C 0.095 3.905 5 N -0.638 5.638 6 C 0.709 3.291 7 O -0.645 6.645 8 N -0.719 5.719 9 C 0.252 3.748 10 C -0.545 4.545 11 H 0.060 0.940 12 C 0.029 3.971 13 N -0.929 5.929 14 Si 0.936 3.064 15 H -0.264 1.264 16 H -0.272 1.272 17 H -0.263 1.263 18 C 0.126 3.874 19 C -0.090 4.090 20 H 0.121 0.879 21 C 0.155 3.845 22 N -0.703 5.703 23 C 0.645 3.355 24 O -0.593 6.593 25 O -0.371 6.371 26 C 0.125 3.875 27 C -0.177 4.177 28 C -0.137 4.137 29 C -0.181 4.181 30 H 0.074 0.926 31 H 0.066 0.934 32 H 0.068 0.932 33 H 0.075 0.925 34 H 0.084 0.916 35 H 0.403 0.597 36 H 0.009 0.991 37 H 0.009 0.991 38 H 0.273 0.727 39 H 0.051 0.949 40 H 0.065 0.935 41 H 0.090 0.910 42 H 0.061 0.939 43 H 0.416 0.584 44 H 0.064 0.936 45 H 0.089 0.911 46 H 0.063 0.937 47 H 0.065 0.935 48 H 0.101 0.899 49 H 0.071 0.929 50 H 0.062 0.938 51 H 0.090 0.910 52 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.747 3.310 30.910 33.598 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.102 4.102 3 H 0.108 0.892 4 C -0.027 4.027 5 N -0.376 5.376 6 C 0.410 3.590 7 O -0.528 6.528 8 N -0.373 5.373 9 C 0.127 3.873 10 C -0.583 4.583 11 H 0.078 0.922 12 C -0.172 4.172 13 N -0.567 5.567 14 Si 0.760 3.240 15 H -0.189 1.189 16 H -0.197 1.197 17 H -0.187 1.187 18 C 0.003 3.997 19 C -0.109 4.109 20 H 0.139 0.861 21 C 0.032 3.968 22 N -0.363 5.363 23 C 0.398 3.602 24 O -0.484 6.484 25 O -0.286 6.286 26 C 0.088 3.912 27 C -0.235 4.235 28 C -0.194 4.194 29 C -0.238 4.238 30 H 0.093 0.907 31 H 0.085 0.915 32 H 0.087 0.913 33 H 0.093 0.907 34 H 0.102 0.898 35 H 0.239 0.761 36 H 0.026 0.974 37 H 0.027 0.973 38 H 0.082 0.918 39 H 0.069 0.931 40 H 0.083 0.917 41 H 0.109 0.891 42 H 0.079 0.921 43 H 0.252 0.748 44 H 0.083 0.917 45 H 0.108 0.892 46 H 0.082 0.918 47 H 0.084 0.916 48 H 0.120 0.880 49 H 0.090 0.910 50 H 0.081 0.919 51 H 0.109 0.891 52 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -11.923 3.602 31.119 33.519 hybrid contribution 0.831 -0.422 -0.784 1.217 sum -11.092 3.180 30.335 32.456 Atomic orbital electron populations 1.21717 0.91150 1.03290 1.03316 1.22314 0.97793 0.98853 0.91197 0.89224 1.22700 0.82038 0.99153 0.98816 1.47491 1.12231 1.71144 1.06720 1.15750 0.83046 0.78649 0.81525 1.90831 1.28013 1.57514 1.76401 1.45125 1.17389 1.71402 1.03389 1.18964 0.85948 0.94513 0.87842 1.21236 1.00517 1.47251 0.89313 0.92205 1.25552 1.02571 0.94533 0.94537 1.69972 1.37815 1.49266 0.99685 0.85873 0.79807 0.79654 0.78657 1.18870 1.19661 1.18749 1.21948 0.98174 1.01355 0.78236 1.22508 0.94930 0.99802 0.93673 0.86107 1.21327 1.00697 0.92646 0.82084 1.44755 1.70495 1.13987 1.07050 1.18276 0.76552 0.83602 0.81779 1.90898 1.57857 1.15265 1.84362 1.86320 1.79592 1.42732 1.19921 1.22398 0.96392 0.93045 0.79330 1.22453 0.95992 1.01840 1.03178 1.21889 1.02116 0.98712 0.96671 1.22485 0.98151 0.98933 1.04273 0.90712 0.91494 0.91295 0.90689 0.89765 0.76097 0.97350 0.97279 0.91790 0.93089 0.91666 0.89142 0.92067 0.74774 0.91719 0.89247 0.91785 0.91589 0.88026 0.90997 0.91886 0.89133 0.92451 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.16 9.32 71.98 0.67 -0.49 16 2 C -0.08 -1.07 3.10 -9.33 -0.03 -1.10 16 3 H 0.09 1.25 8.05 -2.38 -0.02 1.23 16 4 C 0.09 1.88 6.06 86.93 0.53 2.41 16 5 N -0.64 -18.46 3.33 -829.33 -2.76 -21.22 16 6 C 0.71 29.05 8.49 179.05 1.52 30.57 16 7 O -0.64 -31.94 16.67 -4.00 -0.07 -32.00 16 8 N -0.72 -30.64 5.51 -482.29 -2.66 -33.29 16 9 C 0.25 12.82 4.50 85.63 0.38 13.21 16 10 C -0.55 -30.54 9.83 25.60 0.25 -30.29 16 11 H 0.06 3.50 7.84 -2.91 -0.02 3.47 16 12 C 0.03 1.63 5.47 84.66 0.46 2.10 16 13 N -0.93 -55.52 13.96 21.45 0.30 -55.22 16 14 Si 0.94 44.67 27.47 68.60 1.88 46.55 16 15 H -0.26 -12.14 7.11 99.48 0.71 -11.44 16 16 H -0.27 -12.36 7.11 99.48 0.71 -11.65 16 17 H -0.26 -12.61 6.54 99.48 0.65 -11.95 16 18 C 0.13 2.84 6.27 86.73 0.54 3.39 16 19 C -0.09 -1.17 2.45 -9.61 -0.02 -1.19 16 20 H 0.12 1.08 8.04 -2.39 -0.02 1.06 16 21 C 0.15 2.18 5.00 86.38 0.43 2.61 16 22 N -0.70 -11.02 5.43 -590.85 -3.21 -14.23 16 23 C 0.64 13.47 8.06 129.79 1.05 14.51 16 24 O -0.59 -15.11 11.88 19.81 0.24 -14.87 16 25 O -0.37 -7.15 9.94 -55.42 -0.55 -7.70 16 26 C 0.12 1.92 1.13 -10.79 -0.01 1.91 16 27 C -0.18 -2.53 8.37 71.98 0.60 -1.93 16 28 C -0.14 -1.34 8.85 71.98 0.64 -0.70 16 29 C -0.18 -2.95 8.37 71.98 0.60 -2.35 16 30 H 0.07 0.49 8.14 -2.39 -0.02 0.47 16 31 H 0.07 0.57 8.14 -2.39 -0.02 0.55 16 32 H 0.07 0.51 8.08 -2.39 -0.02 0.49 16 33 H 0.07 1.55 7.30 -2.39 -0.02 1.54 16 34 H 0.08 1.46 7.99 -2.38 -0.02 1.44 16 35 H 0.40 15.10 6.80 -92.71 -0.63 14.47 16 36 H 0.01 0.46 7.20 -2.39 -0.02 0.44 16 37 H 0.01 0.49 7.57 -2.39 -0.02 0.47 16 38 H 0.27 15.18 8.31 -92.71 -0.77 14.41 16 39 H 0.05 1.32 7.73 -2.39 -0.02 1.31 16 40 H 0.06 1.48 8.14 -2.38 -0.02 1.46 16 41 H 0.09 1.12 8.14 -2.38 -0.02 1.10 16 42 H 0.06 1.08 8.00 -2.38 -0.02 1.07 16 43 H 0.42 5.10 8.51 -92.71 -0.79 4.31 16 44 H 0.06 0.84 8.14 -2.38 -0.02 0.82 16 45 H 0.09 0.89 8.14 -2.39 -0.02 0.87 16 46 H 0.06 1.25 5.89 -2.39 -0.01 1.24 16 47 H 0.07 0.68 8.14 -2.39 -0.02 0.66 16 48 H 0.10 0.56 8.14 -2.39 -0.02 0.54 16 49 H 0.07 0.64 8.14 -2.39 -0.02 0.62 16 50 H 0.06 1.38 5.87 -2.38 -0.01 1.36 16 51 H 0.09 1.05 8.14 -2.39 -0.02 1.03 16 52 H 0.06 0.95 8.14 -2.39 -0.02 0.93 16 Total: -1.00 -77.25 412.93 0.23 -77.02 By element: Atomic # 1 Polarization: 22.89 SS G_CDS: -0.56 Total: 22.33 kcal Atomic # 6 Polarization: 25.03 SS G_CDS: 7.62 Total: 32.65 kcal Atomic # 7 Polarization: -115.64 SS G_CDS: -8.33 Total: -123.97 kcal Atomic # 8 Polarization: -54.19 SS G_CDS: -0.38 Total: -54.57 kcal Atomic # 14 Polarization: 44.67 SS G_CDS: 1.88 Total: 46.55 kcal Total: -77.25 0.23 -77.02 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000875539998.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -67.877 kcal (2) G-P(sol) polarization free energy of solvation -77.249 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -145.126 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.233 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.016 kcal (6) G-S(sol) free energy of system = (1) + (5) -144.893 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds