Wall clock time and date at job start Wed Apr 1 2020 00:27:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08997 * 109.58317 * 2 1 4 4 C 1.53195 * 109.58867 * 239.57299 * 2 1 3 5 5 C 1.53047 * 109.31141 * 294.84821 * 4 2 1 6 6 C 1.53046 * 109.53490 * 298.63588 * 5 4 2 7 7 H 1.08999 * 109.52113 * 301.39634 * 6 5 4 8 8 N 1.46500 * 109.49396 * 181.31958 * 6 5 4 9 9 C 1.34772 * 120.00121 * 155.16468 * 8 6 5 10 10 O 1.21583 * 119.99720 * 359.97438 * 9 8 6 11 11 N 1.34780 * 120.00305 * 179.97438 * 9 8 6 12 12 C 1.46491 * 120.00091 * 179.97438 * 11 9 8 13 13 C 1.50702 * 109.46957 * 179.97438 * 12 11 9 14 14 H 1.08002 * 120.00299 * 0.02562 * 13 12 11 15 15 C 1.37884 * 119.99942 * 179.72213 * 13 12 11 16 16 N 1.31514 * 119.99698 * 0.28408 * 15 13 12 17 17 Si 1.86794 * 119.99837 * 180.27476 * 15 13 12 18 18 H 1.48496 * 109.47341 * 0.02562 * 17 15 13 19 19 H 1.48508 * 109.46983 * 120.00379 * 17 15 13 20 20 H 1.48503 * 109.47491 * 240.00192 * 17 15 13 21 21 C 1.53184 * 109.31204 * 61.36565 * 6 5 4 22 22 N 1.46920 * 108.77751 * 305.36111 * 21 6 5 23 23 C 1.34775 * 120.63203 * 233.63229 * 22 21 6 24 24 O 1.21519 * 120.00260 * 179.97438 * 23 22 21 25 25 O 1.34643 * 120.00148 * 0.02562 * 23 22 21 26 26 C 1.45198 * 116.99985 * 180.02562 * 25 23 22 27 27 C 1.52996 * 109.47088 * 59.99948 * 26 25 23 28 28 C 1.53001 * 109.46755 * 179.97438 * 26 25 23 29 29 C 1.52996 * 109.47113 * 299.99811 * 26 25 23 30 30 H 1.08995 * 109.47681 * 299.72116 * 1 2 3 31 31 H 1.09006 * 109.47067 * 59.72127 * 1 2 3 32 32 H 1.09001 * 109.46952 * 179.71303 * 1 2 3 33 33 H 1.08993 * 109.49650 * 54.79923 * 4 2 1 34 34 H 1.09003 * 109.49524 * 174.86581 * 4 2 1 35 35 H 1.09000 * 109.45578 * 178.61594 * 5 4 2 36 36 H 1.09001 * 109.45688 * 58.65339 * 5 4 2 37 37 H 0.97005 * 120.00110 * 335.15350 * 8 6 5 38 38 H 0.97003 * 119.99349 * 359.97438 * 11 9 8 39 39 H 1.09004 * 109.47166 * 60.00164 * 12 11 9 40 40 H 1.08994 * 109.47507 * 299.99870 * 12 11 9 41 41 H 0.97005 * 119.99651 * 179.97438 * 16 15 13 42 42 H 1.08994 * 109.58889 * 65.15394 * 21 6 5 43 43 H 1.09000 * 109.58541 * 185.43195 * 21 6 5 44 44 H 1.08997 * 109.47526 * 59.99906 * 27 26 25 45 45 H 1.09002 * 109.46938 * 179.97438 * 27 26 25 46 46 H 1.08997 * 109.47571 * 299.99505 * 27 26 25 47 47 H 1.08999 * 109.47284 * 60.00059 * 28 26 25 48 48 H 1.09002 * 109.46920 * 179.97438 * 28 26 25 49 49 H 1.08997 * 109.47102 * 299.99629 * 28 26 25 50 50 H 1.09001 * 109.47510 * 60.00323 * 29 26 25 51 51 H 1.09002 * 109.47098 * 180.02562 * 29 26 25 52 52 H 1.08999 * 109.47131 * 300.00066 * 29 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8953 1.0269 0.0000 4 6 2.0436 -0.7309 -1.2445 5 6 1.6415 -2.2056 -1.1674 6 6 2.2800 -2.8463 0.0672 7 1 3.3640 -2.7478 0.0091 8 7 1.9202 -4.2653 0.1229 9 6 2.7137 -5.1365 0.7770 10 8 3.7283 -4.7448 1.3204 11 7 2.3824 -6.4420 0.8288 12 6 3.2452 -7.3890 1.5393 13 6 2.6543 -8.7723 1.4486 14 1 1.7288 -8.9304 0.9147 15 6 3.2984 -9.8374 2.0419 16 7 4.4255 -9.6450 2.6917 17 14 2.5699 -11.5533 1.9229 18 1 1.3068 -11.5019 1.1437 19 1 3.5345 -12.4544 1.2425 20 1 2.2897 -12.0679 3.2874 21 6 1.7691 -2.1393 1.3264 22 7 2.0225 -0.6981 1.1953 23 6 2.6943 -0.0291 2.1532 24 8 2.8979 1.1629 2.0329 25 8 3.1408 -0.6815 3.2430 26 6 3.8559 0.1027 4.2340 27 6 2.9429 1.2104 4.7633 28 6 4.2814 -0.8034 5.3911 29 6 5.0962 0.7273 3.5919 30 1 -0.3634 0.5095 0.8924 31 1 -0.3633 0.5182 -0.8875 32 1 -0.3633 -1.0277 -0.0051 33 1 1.6076 -0.2811 -2.1364 34 1 3.1297 -0.6515 -1.2907 35 1 1.9844 -2.7228 -2.0635 36 1 0.5565 -2.2829 -1.0965 37 1 1.1108 -4.5779 -0.3108 38 1 1.5727 -6.7543 0.3955 39 1 3.3224 -7.0952 2.5861 40 1 4.2369 -7.3868 1.0872 41 1 4.8784 -10.3942 3.1094 42 1 0.6987 -2.3138 1.4346 43 1 2.2925 -2.5265 2.2006 44 1 2.0593 0.7655 5.2207 45 1 3.4796 1.7989 5.5076 46 1 2.6394 1.8560 3.9392 47 1 4.9316 -1.5928 5.0143 48 1 4.8186 -0.2147 6.1348 49 1 3.3975 -1.2479 5.8484 50 1 4.7927 1.3728 2.7678 51 1 5.6332 1.3156 4.3360 52 1 5.7466 -0.0619 3.2148 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000875540529.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:27:02 Heat of formation + Delta-G solvation = -121.218749 kcal Electronic energy + Delta-G solvation = -31541.187650 eV Core-core repulsion = 27347.543041 eV Total energy + Delta-G solvation = -4193.644609 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 341.215 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -41.07340 -39.70633 -38.60968 -36.68841 -34.63767 -34.31848 -33.96110 -32.64816 -32.34291 -30.57595 -27.94750 -27.47209 -27.43846 -26.82299 -24.84456 -23.44315 -22.68318 -21.74201 -20.25830 -20.05718 -18.97081 -18.10280 -17.82161 -16.75374 -16.41032 -16.03478 -15.78762 -15.59732 -15.24277 -14.77153 -14.69187 -14.40738 -14.12763 -14.00270 -13.63729 -13.50483 -13.35063 -13.26122 -12.99311 -12.54579 -12.47613 -12.37291 -12.24790 -12.00211 -11.97215 -11.94519 -11.92647 -11.58136 -11.48366 -11.35972 -11.09454 -11.05299 -10.91713 -10.90524 -10.63178 -10.39850 -10.30063 -10.02495 -9.42103 -9.34879 -9.16115 -8.73592 -8.57822 -7.76833 -6.15211 -4.21589 2.04702 2.78096 3.22816 3.23939 3.31748 3.34962 3.78625 3.93097 4.32795 4.48567 4.58189 4.61568 4.65453 4.70781 4.83497 4.83933 4.97914 5.07864 5.17025 5.21073 5.25361 5.30909 5.34848 5.39465 5.45390 5.48367 5.56677 5.62444 5.65472 5.69687 5.75044 5.77040 5.78558 5.86973 5.95471 6.00738 6.15377 6.17961 6.22781 6.37750 6.44821 6.82621 7.11385 7.28089 7.51530 7.55390 7.57830 7.90513 8.04303 8.29662 8.76898 8.93955 9.33106 9.48212 10.95043 Molecular weight = 341.21amu Principal moments of inertia in cm(-1) A = 0.012064 B = 0.002733 C = 0.002331 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2320.489670 B =10243.087636 C =12009.057002 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.150 3.850 3 H 0.104 0.896 4 C -0.125 4.125 5 C -0.130 4.130 6 C 0.155 3.845 7 H 0.091 0.909 8 N -0.751 5.751 9 C 0.692 3.308 10 O -0.596 6.596 11 N -0.729 5.729 12 C 0.267 3.733 13 C -0.541 4.541 14 H 0.063 0.937 15 C 0.063 3.937 16 N -0.885 5.885 17 Si 0.904 3.096 18 H -0.272 1.272 19 H -0.282 1.282 20 H -0.282 1.282 21 C 0.100 3.900 22 N -0.588 5.588 23 C 0.658 3.342 24 O -0.575 6.575 25 O -0.355 6.355 26 C 0.136 3.864 27 C -0.181 4.181 28 C -0.143 4.143 29 C -0.183 4.183 30 H 0.058 0.942 31 H 0.070 0.930 32 H 0.063 0.937 33 H 0.083 0.917 34 H 0.072 0.928 35 H 0.075 0.925 36 H 0.073 0.927 37 H 0.392 0.608 38 H 0.386 0.614 39 H 0.025 0.975 40 H 0.024 0.976 41 H 0.265 0.735 42 H 0.069 0.931 43 H 0.100 0.900 44 H 0.058 0.942 45 H 0.068 0.932 46 H 0.086 0.914 47 H 0.071 0.929 48 H 0.078 0.922 49 H 0.067 0.933 50 H 0.086 0.914 51 H 0.068 0.932 52 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.788 22.001 -3.932 23.668 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.048 3.952 3 H 0.122 0.878 4 C -0.164 4.164 5 C -0.168 4.168 6 C 0.048 3.952 7 H 0.109 0.891 8 N -0.408 5.408 9 C 0.391 3.609 10 O -0.475 6.475 11 N -0.380 5.380 12 C 0.146 3.854 13 C -0.579 4.579 14 H 0.081 0.919 15 C -0.141 4.141 16 N -0.522 5.522 17 Si 0.731 3.269 18 H -0.197 1.197 19 H -0.208 1.208 20 H -0.208 1.208 21 C -0.024 4.024 22 N -0.328 5.328 23 C 0.413 3.587 24 O -0.466 6.466 25 O -0.269 6.269 26 C 0.099 3.901 27 C -0.238 4.238 28 C -0.200 4.200 29 C -0.240 4.240 30 H 0.078 0.922 31 H 0.089 0.911 32 H 0.082 0.918 33 H 0.102 0.898 34 H 0.091 0.909 35 H 0.094 0.906 36 H 0.091 0.909 37 H 0.226 0.774 38 H 0.218 0.782 39 H 0.043 0.957 40 H 0.042 0.958 41 H 0.075 0.925 42 H 0.087 0.913 43 H 0.119 0.881 44 H 0.077 0.923 45 H 0.087 0.913 46 H 0.104 0.896 47 H 0.090 0.910 48 H 0.097 0.903 49 H 0.086 0.914 50 H 0.104 0.896 51 H 0.087 0.913 52 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -6.543 22.575 -3.232 23.725 hybrid contribution -1.059 -1.373 -0.325 1.764 sum -7.601 21.202 -3.557 22.802 Atomic orbital electron populations 1.22176 0.94691 1.02750 1.02520 1.21225 0.94108 0.97370 0.82514 0.87760 1.21906 1.02168 0.94984 0.97324 1.21870 1.01207 0.95615 0.98070 1.20919 1.01071 0.79685 0.93526 0.89129 1.45140 1.28260 1.06861 1.60551 1.16186 0.83260 0.81632 0.79779 1.90892 1.26942 1.78215 1.51413 1.45722 1.28494 1.05672 1.58160 1.18977 0.89442 0.85172 0.91816 1.21263 1.08964 0.91999 1.35711 0.91927 1.24948 0.94809 0.99445 0.94862 1.69992 1.16230 1.31814 1.34202 0.86368 0.79035 0.83632 0.77882 1.19683 1.20839 1.20820 1.22206 1.01281 0.78360 1.00588 1.46973 1.56909 1.09299 1.19631 1.17964 0.77200 0.83486 0.80040 1.90855 1.62081 1.13933 1.79712 1.86396 1.68638 1.42353 1.29492 1.22071 0.91058 0.90862 0.86123 1.22502 0.99691 0.98929 1.02714 1.21871 1.02451 0.99926 0.95759 1.22505 0.96715 1.02006 1.02755 0.92247 0.91089 0.91773 0.89835 0.90926 0.90623 0.90889 0.77439 0.78182 0.95725 0.95775 0.92533 0.91289 0.88123 0.92289 0.91271 0.89555 0.90994 0.90283 0.91442 0.89557 0.91303 0.91923 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.21 9.03 37.16 0.34 -0.87 16 2 C 0.15 1.40 3.21 -67.60 -0.22 1.18 16 3 H 0.10 1.06 7.00 -51.93 -0.36 0.70 16 4 C -0.13 -1.00 5.55 -26.61 -0.15 -1.15 16 5 C -0.13 -1.11 5.15 -26.68 -0.14 -1.25 16 6 C 0.16 1.95 2.60 -67.81 -0.18 1.77 16 7 H 0.09 1.42 7.58 -51.93 -0.39 1.03 16 8 N -0.75 -10.44 5.09 -58.56 -0.30 -10.73 16 9 C 0.69 13.79 8.53 -86.92 -0.74 13.05 16 10 O -0.60 -14.58 16.01 5.29 0.08 -14.49 16 11 N -0.73 -15.19 5.55 -66.42 -0.37 -15.56 16 12 C 0.27 7.08 5.43 -5.20 -0.03 7.05 16 13 C -0.54 -14.59 9.28 -34.44 -0.32 -14.91 16 14 H 0.06 1.58 7.60 -52.49 -0.40 1.18 16 15 C 0.06 1.74 5.46 -17.82 -0.10 1.64 16 16 N -0.88 -26.04 13.29 55.43 0.74 -25.31 16 17 Si 0.90 20.76 29.54 -169.99 -5.02 15.74 16 18 H -0.27 -6.04 7.11 56.52 0.40 -5.64 16 19 H -0.28 -6.46 7.11 56.52 0.40 -6.05 16 20 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 21 C 0.10 1.27 5.60 -3.72 -0.02 1.25 16 22 N -0.59 -7.16 2.68 -170.98 -0.46 -7.62 16 23 C 0.66 9.41 7.74 54.05 0.42 9.83 16 24 O -0.58 -8.67 11.29 -19.29 -0.22 -8.89 16 25 O -0.35 -5.24 8.53 -40.33 -0.34 -5.58 16 26 C 0.14 1.65 1.13 -90.62 -0.10 1.55 16 27 C -0.18 -1.96 8.37 37.16 0.31 -1.65 16 28 C -0.14 -1.53 8.85 37.16 0.33 -1.20 16 29 C -0.18 -2.13 8.37 37.16 0.31 -1.82 16 30 H 0.06 0.50 8.14 -51.93 -0.42 0.07 16 31 H 0.07 0.40 8.14 -51.93 -0.42 -0.03 16 32 H 0.06 0.46 5.72 -51.93 -0.30 0.16 16 33 H 0.08 0.48 8.14 -51.93 -0.42 0.06 16 34 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 35 H 0.08 0.63 8.14 -51.93 -0.42 0.21 16 36 H 0.07 0.51 6.49 -51.93 -0.34 0.18 16 37 H 0.39 4.18 8.62 -40.82 -0.35 3.83 16 38 H 0.39 6.81 8.34 -40.82 -0.34 6.47 16 39 H 0.02 0.73 8.14 -51.93 -0.42 0.30 16 40 H 0.02 0.71 8.14 -51.93 -0.42 0.29 16 41 H 0.26 7.29 8.31 -40.82 -0.34 6.95 16 42 H 0.07 0.77 7.50 -51.93 -0.39 0.38 16 43 H 0.10 1.62 6.93 -51.93 -0.36 1.26 16 44 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 45 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 46 H 0.09 1.08 5.88 -51.93 -0.31 0.77 16 47 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 48 H 0.08 0.65 8.14 -51.93 -0.42 0.23 16 49 H 0.07 0.72 8.14 -51.93 -0.42 0.29 16 50 H 0.09 1.14 5.88 -51.93 -0.31 0.83 16 51 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 52 H 0.06 0.77 8.14 -51.93 -0.42 0.34 16 LS Contribution 407.42 15.07 6.14 6.14 Total: -1.00 -33.84 407.42 -8.93 -42.77 By element: Atomic # 1 Polarization: 17.95 SS G_CDS: -8.90 Total: 9.05 kcal Atomic # 6 Polarization: 14.77 SS G_CDS: -0.28 Total: 14.49 kcal Atomic # 7 Polarization: -58.83 SS G_CDS: -0.39 Total: -59.22 kcal Atomic # 8 Polarization: -28.49 SS G_CDS: -0.48 Total: -28.96 kcal Atomic # 14 Polarization: 20.76 SS G_CDS: -5.02 Total: 15.74 kcal Total LS contribution 6.14 Total: 6.14 kcal Total: -33.84 -8.93 -42.77 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000875540529.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -78.448 kcal (2) G-P(sol) polarization free energy of solvation -33.845 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -112.293 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.926 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.771 kcal (6) G-S(sol) free energy of system = (1) + (5) -121.219 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds