Wall clock time and date at job start Wed Apr 1 2020 00:27:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08997 * 109.58317 * 2 1 4 4 C 1.53195 * 109.58867 * 239.57299 * 2 1 3 5 5 C 1.53047 * 109.31141 * 294.84821 * 4 2 1 6 6 C 1.53046 * 109.53490 * 298.63588 * 5 4 2 7 7 H 1.08999 * 109.52113 * 301.39634 * 6 5 4 8 8 N 1.46500 * 109.49396 * 181.31958 * 6 5 4 9 9 C 1.34772 * 120.00121 * 155.16468 * 8 6 5 10 10 O 1.21583 * 119.99720 * 359.97438 * 9 8 6 11 11 N 1.34780 * 120.00305 * 179.97438 * 9 8 6 12 12 C 1.46491 * 120.00091 * 179.97438 * 11 9 8 13 13 C 1.50702 * 109.46957 * 179.97438 * 12 11 9 14 14 H 1.08002 * 120.00299 * 0.02562 * 13 12 11 15 15 C 1.37884 * 119.99942 * 179.72213 * 13 12 11 16 16 N 1.31514 * 119.99698 * 0.28408 * 15 13 12 17 17 Si 1.86794 * 119.99837 * 180.27476 * 15 13 12 18 18 H 1.48496 * 109.47341 * 0.02562 * 17 15 13 19 19 H 1.48508 * 109.46983 * 120.00379 * 17 15 13 20 20 H 1.48503 * 109.47491 * 240.00192 * 17 15 13 21 21 C 1.53184 * 109.31204 * 61.36565 * 6 5 4 22 22 N 1.46920 * 108.77751 * 305.36111 * 21 6 5 23 23 C 1.34775 * 120.63203 * 233.63229 * 22 21 6 24 24 O 1.21519 * 120.00260 * 179.97438 * 23 22 21 25 25 O 1.34643 * 120.00148 * 0.02562 * 23 22 21 26 26 C 1.45198 * 116.99985 * 180.02562 * 25 23 22 27 27 C 1.52996 * 109.47088 * 59.99948 * 26 25 23 28 28 C 1.53001 * 109.46755 * 179.97438 * 26 25 23 29 29 C 1.52996 * 109.47113 * 299.99811 * 26 25 23 30 30 H 1.08995 * 109.47681 * 299.72116 * 1 2 3 31 31 H 1.09006 * 109.47067 * 59.72127 * 1 2 3 32 32 H 1.09001 * 109.46952 * 179.71303 * 1 2 3 33 33 H 1.08993 * 109.49650 * 54.79923 * 4 2 1 34 34 H 1.09003 * 109.49524 * 174.86581 * 4 2 1 35 35 H 1.09000 * 109.45578 * 178.61594 * 5 4 2 36 36 H 1.09001 * 109.45688 * 58.65339 * 5 4 2 37 37 H 0.97005 * 120.00110 * 335.15350 * 8 6 5 38 38 H 0.97003 * 119.99349 * 359.97438 * 11 9 8 39 39 H 1.09004 * 109.47166 * 60.00164 * 12 11 9 40 40 H 1.08994 * 109.47507 * 299.99870 * 12 11 9 41 41 H 0.97005 * 119.99651 * 179.97438 * 16 15 13 42 42 H 1.08994 * 109.58889 * 65.15394 * 21 6 5 43 43 H 1.09000 * 109.58541 * 185.43195 * 21 6 5 44 44 H 1.08997 * 109.47526 * 59.99906 * 27 26 25 45 45 H 1.09002 * 109.46938 * 179.97438 * 27 26 25 46 46 H 1.08997 * 109.47571 * 299.99505 * 27 26 25 47 47 H 1.08999 * 109.47284 * 60.00059 * 28 26 25 48 48 H 1.09002 * 109.46920 * 179.97438 * 28 26 25 49 49 H 1.08997 * 109.47102 * 299.99629 * 28 26 25 50 50 H 1.09001 * 109.47510 * 60.00323 * 29 26 25 51 51 H 1.09002 * 109.47098 * 180.02562 * 29 26 25 52 52 H 1.08999 * 109.47131 * 300.00066 * 29 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8953 1.0269 0.0000 4 6 2.0436 -0.7309 -1.2445 5 6 1.6415 -2.2056 -1.1674 6 6 2.2800 -2.8463 0.0672 7 1 3.3640 -2.7478 0.0091 8 7 1.9202 -4.2653 0.1229 9 6 2.7137 -5.1365 0.7770 10 8 3.7283 -4.7448 1.3204 11 7 2.3824 -6.4420 0.8288 12 6 3.2452 -7.3890 1.5393 13 6 2.6543 -8.7723 1.4486 14 1 1.7288 -8.9304 0.9147 15 6 3.2984 -9.8374 2.0419 16 7 4.4255 -9.6450 2.6917 17 14 2.5699 -11.5533 1.9229 18 1 1.3068 -11.5019 1.1437 19 1 3.5345 -12.4544 1.2425 20 1 2.2897 -12.0679 3.2874 21 6 1.7691 -2.1393 1.3264 22 7 2.0225 -0.6981 1.1953 23 6 2.6943 -0.0291 2.1532 24 8 2.8979 1.1629 2.0329 25 8 3.1408 -0.6815 3.2430 26 6 3.8559 0.1027 4.2340 27 6 2.9429 1.2104 4.7633 28 6 4.2814 -0.8034 5.3911 29 6 5.0962 0.7273 3.5919 30 1 -0.3634 0.5095 0.8924 31 1 -0.3633 0.5182 -0.8875 32 1 -0.3633 -1.0277 -0.0051 33 1 1.6076 -0.2811 -2.1364 34 1 3.1297 -0.6515 -1.2907 35 1 1.9844 -2.7228 -2.0635 36 1 0.5565 -2.2829 -1.0965 37 1 1.1108 -4.5779 -0.3108 38 1 1.5727 -6.7543 0.3955 39 1 3.3224 -7.0952 2.5861 40 1 4.2369 -7.3868 1.0872 41 1 4.8784 -10.3942 3.1094 42 1 0.6987 -2.3138 1.4346 43 1 2.2925 -2.5265 2.2006 44 1 2.0593 0.7655 5.2207 45 1 3.4796 1.7989 5.5076 46 1 2.6394 1.8560 3.9392 47 1 4.9316 -1.5928 5.0143 48 1 4.8186 -0.2147 6.1348 49 1 3.3975 -1.2479 5.8484 50 1 4.7927 1.3728 2.7678 51 1 5.6332 1.3156 4.3360 52 1 5.7466 -0.0619 3.2148 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000875540529.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:27:01 Heat of formation + Delta-G solvation = -145.340249 kcal Electronic energy + Delta-G solvation = -31542.233637 eV Core-core repulsion = 27347.543041 eV Total energy + Delta-G solvation = -4194.690596 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 341.215 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -42.11281 -41.06295 -39.82711 -37.78912 -36.22054 -35.63501 -35.27251 -34.32922 -33.54685 -31.71563 -29.22261 -28.42652 -28.39288 -28.31341 -25.74654 -24.88549 -24.03901 -22.95877 -21.78963 -21.09726 -20.12272 -19.56435 -18.91568 -18.00813 -17.76576 -17.53326 -17.15995 -16.63222 -16.48663 -16.19094 -16.02349 -15.55112 -15.40742 -15.23644 -14.95663 -14.56786 -14.39317 -14.32312 -14.11717 -14.01006 -13.86770 -13.40242 -13.21322 -13.14607 -13.03149 -12.93279 -12.90892 -12.84147 -12.74985 -12.53986 -12.42719 -12.33800 -12.19793 -11.99261 -11.80021 -11.46086 -11.41825 -11.41423 -11.18334 -11.08444 -10.79827 -10.44392 -9.85085 -9.49980 -8.26735 -6.42832 1.08497 1.44804 1.46179 1.59291 1.67911 1.86901 2.26235 2.40504 2.78089 3.08549 3.54145 3.63816 3.70402 3.75881 3.79155 3.90731 3.91593 3.94312 4.12341 4.34789 4.39641 4.51704 4.57446 4.58159 4.59417 4.66863 4.72003 4.74458 4.81446 4.82593 4.90239 4.96206 5.05050 5.08206 5.10243 5.12193 5.19669 5.23785 5.27696 5.29606 5.38985 5.47219 5.49066 5.51862 5.61041 5.71398 5.87536 6.22019 6.30083 6.69631 7.22612 7.26715 7.35602 7.76186 8.85838 Molecular weight = 341.21amu Principal moments of inertia in cm(-1) A = 0.012064 B = 0.002733 C = 0.002331 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2320.489670 B =10243.087636 C =12009.057002 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.143 3.857 3 H 0.094 0.906 4 C -0.119 4.119 5 C -0.118 4.118 6 C 0.156 3.844 7 H 0.053 0.947 8 N -0.722 5.722 9 C 0.691 3.309 10 O -0.647 6.647 11 N -0.721 5.721 12 C 0.286 3.714 13 C -0.552 4.552 14 H 0.085 0.915 15 C 0.002 3.998 16 N -0.932 5.932 17 Si 0.985 3.015 18 H -0.252 1.252 19 H -0.280 1.280 20 H -0.280 1.280 21 C 0.107 3.893 22 N -0.585 5.585 23 C 0.647 3.353 24 O -0.588 6.588 25 O -0.377 6.377 26 C 0.121 3.879 27 C -0.171 4.171 28 C -0.140 4.140 29 C -0.176 4.176 30 H 0.046 0.954 31 H 0.098 0.902 32 H 0.072 0.928 33 H 0.120 0.880 34 H 0.054 0.946 35 H 0.087 0.913 36 H 0.103 0.897 37 H 0.415 0.585 38 H 0.406 0.594 39 H -0.016 1.016 40 H -0.017 1.017 41 H 0.268 0.732 42 H 0.093 0.907 43 H 0.059 0.941 44 H 0.059 0.941 45 H 0.094 0.906 46 H 0.068 0.932 47 H 0.052 0.948 48 H 0.109 0.891 49 H 0.065 0.935 50 H 0.069 0.931 51 H 0.095 0.905 52 H 0.047 0.953 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.789 22.041 -5.598 25.171 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C 0.042 3.958 3 H 0.112 0.888 4 C -0.158 4.158 5 C -0.156 4.156 6 C 0.049 3.951 7 H 0.071 0.929 8 N -0.380 5.380 9 C 0.390 3.610 10 O -0.529 6.529 11 N -0.375 5.375 12 C 0.163 3.837 13 C -0.589 4.589 14 H 0.103 0.897 15 C -0.197 4.197 16 N -0.570 5.570 17 Si 0.809 3.191 18 H -0.175 1.175 19 H -0.206 1.206 20 H -0.206 1.206 21 C -0.017 4.017 22 N -0.325 5.325 23 C 0.403 3.597 24 O -0.480 6.480 25 O -0.292 6.292 26 C 0.085 3.915 27 C -0.229 4.229 28 C -0.197 4.197 29 C -0.233 4.233 30 H 0.065 0.935 31 H 0.116 0.884 32 H 0.091 0.909 33 H 0.138 0.862 34 H 0.073 0.927 35 H 0.105 0.895 36 H 0.121 0.879 37 H 0.253 0.747 38 H 0.241 0.759 39 H 0.002 0.998 40 H 0.001 0.999 41 H 0.077 0.923 42 H 0.111 0.889 43 H 0.078 0.922 44 H 0.078 0.922 45 H 0.112 0.888 46 H 0.087 0.913 47 H 0.071 0.929 48 H 0.127 0.873 49 H 0.084 0.916 50 H 0.088 0.912 51 H 0.114 0.886 52 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges -9.630 22.655 -4.967 25.113 hybrid contribution -0.071 -1.273 0.205 1.292 sum -9.701 21.381 -4.762 23.957 Atomic orbital electron populations 1.22148 0.92480 1.03513 1.03269 1.21522 0.95767 0.96732 0.81770 0.88811 1.21917 1.01355 0.94558 0.97928 1.21856 1.02562 0.95404 0.95750 1.21034 0.99487 0.78757 0.95843 0.92902 1.44820 1.27851 1.06625 1.58668 1.16358 0.83174 0.81762 0.79676 1.90868 1.29502 1.79004 1.53504 1.45269 1.28581 1.05511 1.58135 1.18380 0.88809 0.86858 0.89669 1.21636 1.09676 0.91870 1.35766 0.89684 1.26070 0.95022 1.04499 0.94107 1.70158 1.18070 1.33468 1.35331 0.85102 0.78761 0.77204 0.78065 1.17491 1.20584 1.20559 1.22025 1.01920 0.78763 0.99003 1.47177 1.56351 1.08991 1.20025 1.18226 0.77527 0.83613 0.80371 1.90834 1.62718 1.14341 1.80065 1.86401 1.68995 1.43576 1.30201 1.22417 0.91416 0.91542 0.86128 1.22411 0.99698 0.98214 1.02537 1.21899 1.02280 0.99659 0.95814 1.22446 0.96548 1.01436 1.02914 0.93489 0.88381 0.90909 0.86182 0.92713 0.89477 0.87885 0.74747 0.75876 0.99815 0.99864 0.92317 0.88912 0.92195 0.92203 0.88756 0.91307 0.92895 0.87269 0.91605 0.91237 0.88616 0.93353 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.83 9.03 71.98 0.65 -1.19 16 2 C 0.14 2.46 3.21 44.97 0.14 2.60 16 3 H 0.09 1.85 7.00 -2.39 -0.02 1.84 16 4 C -0.12 -1.61 5.55 30.68 0.17 -1.44 16 5 C -0.12 -1.66 5.15 30.63 0.16 -1.50 16 6 C 0.16 3.84 2.60 45.07 0.12 3.96 16 7 H 0.05 1.74 7.58 -2.39 -0.02 1.73 16 8 N -0.72 -19.38 5.09 -457.45 -2.33 -21.71 16 9 C 0.69 28.23 8.53 179.05 1.53 29.76 16 10 O -0.65 -33.64 16.01 -3.98 -0.06 -33.70 16 11 N -0.72 -30.46 5.55 -482.32 -2.68 -33.14 16 12 C 0.29 15.86 5.43 85.64 0.46 16.32 16 13 C -0.55 -29.85 9.28 25.60 0.24 -29.61 16 14 H 0.09 4.13 7.60 -2.91 -0.02 4.10 16 15 C 0.00 0.13 5.46 84.66 0.46 0.60 16 16 N -0.93 -56.41 13.29 21.45 0.28 -56.13 16 17 Si 0.99 42.11 29.54 68.60 2.03 44.13 16 18 H -0.25 -9.84 7.11 99.48 0.71 -9.13 16 19 H -0.28 -11.80 7.11 99.48 0.71 -11.09 16 20 H -0.28 -11.79 7.11 99.48 0.71 -11.08 16 21 C 0.11 2.76 5.60 86.36 0.48 3.25 16 22 N -0.58 -14.44 2.68 -925.26 -2.48 -16.92 16 23 C 0.65 19.45 7.74 129.79 1.00 20.45 16 24 O -0.59 -18.45 11.29 19.78 0.22 -18.22 16 25 O -0.38 -11.93 8.53 -55.53 -0.47 -12.41 16 26 C 0.12 3.07 1.13 -10.80 -0.01 3.06 16 27 C -0.17 -3.69 8.37 71.98 0.60 -3.08 16 28 C -0.14 -3.08 8.85 71.98 0.64 -2.44 16 29 C -0.18 -4.28 8.37 71.98 0.60 -3.68 16 30 H 0.05 0.69 8.14 -2.39 -0.02 0.67 16 31 H 0.10 0.66 8.14 -2.38 -0.02 0.64 16 32 H 0.07 0.74 5.72 -2.39 -0.01 0.72 16 33 H 0.12 0.85 8.14 -2.39 -0.02 0.83 16 34 H 0.05 0.96 8.14 -2.39 -0.02 0.94 16 35 H 0.09 1.12 8.14 -2.39 -0.02 1.10 16 36 H 0.10 0.92 6.49 -2.39 -0.02 0.90 16 37 H 0.42 7.62 8.62 -92.70 -0.80 6.82 16 38 H 0.41 13.77 8.34 -92.71 -0.77 13.00 16 39 H -0.02 -1.01 8.14 -2.38 -0.02 -1.03 16 40 H -0.02 -1.04 8.14 -2.39 -0.02 -1.06 16 41 H 0.27 15.11 8.31 -92.70 -0.77 14.34 16 42 H 0.09 1.94 7.50 -2.39 -0.02 1.92 16 43 H 0.06 2.07 6.93 -2.39 -0.02 2.05 16 44 H 0.06 1.25 8.14 -2.39 -0.02 1.23 16 45 H 0.09 1.51 8.14 -2.39 -0.02 1.49 16 46 H 0.07 1.74 5.88 -2.39 -0.01 1.73 16 47 H 0.05 1.35 8.14 -2.39 -0.02 1.33 16 48 H 0.11 1.69 8.14 -2.39 -0.02 1.67 16 49 H 0.06 1.45 8.14 -2.39 -0.02 1.43 16 50 H 0.07 1.93 5.88 -2.39 -0.01 1.91 16 51 H 0.10 1.74 8.14 -2.39 -0.02 1.72 16 52 H 0.05 1.27 8.14 -2.39 -0.02 1.26 16 Total: -1.00 -80.18 407.42 1.12 -79.06 By element: Atomic # 1 Polarization: 32.61 SS G_CDS: -0.64 Total: 31.97 kcal Atomic # 6 Polarization: 29.81 SS G_CDS: 7.25 Total: 37.06 kcal Atomic # 7 Polarization: -120.69 SS G_CDS: -7.20 Total: -127.89 kcal Atomic # 8 Polarization: -64.02 SS G_CDS: -0.31 Total: -64.33 kcal Atomic # 14 Polarization: 42.11 SS G_CDS: 2.03 Total: 44.13 kcal Total: -80.18 1.12 -79.06 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000875540529.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -66.281 kcal (2) G-P(sol) polarization free energy of solvation -80.181 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -146.462 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.122 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.059 kcal (6) G-S(sol) free energy of system = (1) + (5) -145.340 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds