Wall clock time and date at job start Wed Apr 1 2020 00:27:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09007 * 109.69850 * 2 1 4 4 C 1.53187 * 109.58683 * 120.35554 * 2 1 3 5 5 C 1.53036 * 109.33909 * 65.13579 * 4 2 1 6 6 C 1.53109 * 109.50477 * 61.34678 * 5 4 2 7 7 H 1.09001 * 109.48443 * 58.61442 * 6 5 4 8 8 N 1.46498 * 109.49311 * 178.69982 * 6 5 4 9 9 C 1.34772 * 120.00472 * 204.86066 * 8 6 5 10 10 O 1.21594 * 119.99734 * 359.97438 * 9 8 6 11 11 N 1.34779 * 120.00419 * 180.02562 * 9 8 6 12 12 C 1.46498 * 119.99947 * 179.97438 * 11 9 8 13 13 C 1.50698 * 109.46593 * 179.97438 * 12 11 9 14 14 H 1.07993 * 120.00701 * 359.97438 * 13 12 11 15 15 C 1.37883 * 119.99577 * 179.97438 * 13 12 11 16 16 N 1.31511 * 119.99888 * 179.97438 * 15 13 12 17 17 Si 1.86795 * 120.00307 * 359.97438 * 15 13 12 18 18 H 1.48505 * 109.47407 * 89.99713 * 17 15 13 19 19 H 1.48501 * 109.47374 * 210.00194 * 17 15 13 20 20 H 1.48505 * 109.47195 * 330.00208 * 17 15 13 21 21 C 1.53194 * 109.33021 * 298.65929 * 6 5 4 22 22 N 1.46925 * 108.77661 * 54.63469 * 21 6 5 23 23 C 1.34770 * 120.63591 * 126.41308 * 22 21 6 24 24 O 1.21505 * 120.00299 * 179.97438 * 23 22 21 25 25 O 1.34644 * 119.99533 * 359.97438 * 23 22 21 26 26 C 1.45198 * 116.99638 * 179.97438 * 25 23 22 27 27 C 1.53000 * 109.47086 * 60.00180 * 26 25 23 28 28 C 1.53002 * 109.46879 * 179.97438 * 26 25 23 29 29 C 1.52995 * 109.47407 * 300.00084 * 26 25 23 30 30 H 1.09003 * 109.47155 * 299.64706 * 1 2 3 31 31 H 1.09003 * 109.47257 * 59.64230 * 1 2 3 32 32 H 1.08996 * 109.47189 * 179.64428 * 1 2 3 33 33 H 1.09002 * 109.49796 * 185.10512 * 4 2 1 34 34 H 1.09000 * 109.49812 * 305.17236 * 4 2 1 35 35 H 1.08997 * 109.46472 * 181.39933 * 5 4 2 36 36 H 1.09003 * 109.46509 * 301.36375 * 5 4 2 37 37 H 0.97003 * 119.99891 * 24.85093 * 8 6 5 38 38 H 0.96998 * 119.99532 * 359.97438 * 11 9 8 39 39 H 1.09001 * 109.47344 * 299.99463 * 12 11 9 40 40 H 1.08993 * 109.47228 * 59.99913 * 12 11 9 41 41 H 0.97004 * 120.00202 * 179.97438 * 16 15 13 42 42 H 1.08995 * 109.58354 * 294.84465 * 21 6 5 43 43 H 1.09003 * 109.58278 * 174.41971 * 21 6 5 44 44 H 1.08995 * 109.47583 * 59.99743 * 27 26 25 45 45 H 1.09011 * 109.47112 * 179.97438 * 27 26 25 46 46 H 1.09003 * 109.47483 * 299.99306 * 27 26 25 47 47 H 1.08998 * 109.47193 * 60.00121 * 28 26 25 48 48 H 1.09006 * 109.47152 * 179.97438 * 28 26 25 49 49 H 1.08995 * 109.47126 * 299.99850 * 28 26 25 50 50 H 1.08994 * 109.47281 * 59.99802 * 29 26 25 51 51 H 1.09006 * 109.47488 * 180.02562 * 29 26 25 52 52 H 1.09006 * 109.46955 * 300.00205 * 29 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8974 1.0263 0.0000 4 6 2.0435 -0.7294 1.2454 5 6 1.6414 -2.2041 1.1709 6 6 2.2800 -2.8464 -0.0636 7 1 3.3639 -2.7474 -0.0053 8 7 1.9202 -4.2654 -0.1176 9 6 2.7137 -5.1375 -0.7705 10 8 3.7281 -4.7464 -1.3150 11 7 2.3824 -6.4430 -0.8207 12 6 3.2447 -7.3907 -1.5308 13 6 2.6545 -8.7742 -1.4372 14 1 1.7299 -8.9318 -0.9019 15 6 3.2951 -9.8388 -2.0350 16 7 2.7803 -11.0462 -1.9529 17 14 4.8940 -9.5663 -2.9615 18 1 6.0392 -9.7214 -2.0289 19 1 5.0082 -10.5635 -4.0559 20 1 4.9058 -8.1970 -3.5363 21 6 1.7691 -2.1409 -1.3238 22 7 2.0225 -0.6995 -1.1946 23 6 2.6936 -0.0315 -2.1536 24 8 2.8964 1.1607 -2.0351 25 8 3.1393 -0.6852 -3.2430 26 6 3.8536 0.0979 -4.2353 27 6 5.0944 0.7233 -3.5948 28 6 4.2795 -0.8096 -5.3912 29 6 2.9403 1.2050 -4.7653 30 1 -0.3633 0.5084 0.8932 31 1 -0.3634 0.5194 -0.8868 32 1 -0.3633 -1.0276 -0.0064 33 1 3.1297 -0.6503 1.2913 34 1 1.6079 -0.2781 2.1368 35 1 1.9843 -2.7198 2.0679 36 1 0.5565 -2.2816 1.1000 37 1 1.1108 -4.5775 0.3166 38 1 1.5730 -6.7549 -0.3866 39 1 3.3212 -7.0981 -2.5780 40 1 4.2367 -7.3880 -1.0794 41 1 3.2307 -11.7952 -2.3737 42 1 0.6987 -2.3156 -1.4317 43 1 2.2944 -2.5274 -2.1972 44 1 5.7451 -0.0654 -3.2173 45 1 5.6309 1.3109 -4.3400 46 1 4.7915 1.3698 -2.7712 47 1 3.3958 -1.2556 -5.8476 48 1 4.8153 -0.2217 -6.1364 49 1 4.9303 -1.5980 -5.0133 50 1 2.6373 1.8514 -3.9417 51 1 3.4764 1.7927 -5.5106 52 1 2.0563 0.7594 -5.2216 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000875540531.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:27:05 Heat of formation + Delta-G solvation = -117.651628 kcal Electronic energy + Delta-G solvation = -31629.163979 eV Core-core repulsion = 27435.674052 eV Total energy + Delta-G solvation = -4193.489927 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 341.215 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -41.13046 -39.80358 -38.71715 -36.75352 -34.74563 -34.37839 -34.07639 -32.70182 -32.37554 -30.71588 -28.17354 -27.53311 -27.50480 -27.26502 -24.89491 -23.44569 -22.52405 -21.60540 -20.35698 -20.15672 -19.04596 -18.21633 -17.91364 -16.80742 -16.46532 -16.31166 -15.96613 -15.66834 -15.29078 -14.86549 -14.59148 -14.44579 -14.21265 -14.11832 -13.70870 -13.56558 -13.41031 -13.31742 -13.06741 -12.62128 -12.55240 -12.43821 -12.34114 -12.29753 -12.25910 -12.03810 -12.00485 -11.64620 -11.57089 -11.41813 -11.14897 -11.10727 -10.95782 -10.76204 -10.68383 -10.45579 -10.07981 -9.96037 -9.61127 -9.45556 -9.24581 -8.77938 -8.67142 -8.03148 -6.20669 -4.22506 1.99122 2.72865 3.12650 3.28316 3.35442 3.43956 3.70410 3.79561 4.34649 4.43404 4.52047 4.56996 4.59618 4.64955 4.77388 4.77915 4.92829 4.94972 5.12910 5.15155 5.18266 5.26353 5.30033 5.33990 5.39798 5.42819 5.52349 5.56866 5.60160 5.64901 5.69849 5.71419 5.73668 5.81269 5.89357 5.94921 6.09619 6.12583 6.16954 6.31976 6.39187 6.72480 6.74080 7.12077 7.22704 7.23651 7.40146 7.55502 8.24355 8.28088 8.68205 8.81229 9.19263 9.40856 10.91317 Molecular weight = 341.21amu Principal moments of inertia in cm(-1) A = 0.011249 B = 0.003013 C = 0.002492 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2488.491075 B = 9289.807942 C =11231.766161 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.150 3.850 3 H 0.105 0.895 4 C -0.125 4.125 5 C -0.130 4.130 6 C 0.155 3.845 7 H 0.091 0.909 8 N -0.749 5.749 9 C 0.694 3.306 10 O -0.599 6.599 11 N -0.722 5.722 12 C 0.239 3.761 13 C -0.542 4.542 14 H 0.079 0.921 15 C 0.077 3.923 16 N -0.894 5.894 17 Si 0.877 3.123 18 H -0.273 1.273 19 H -0.284 1.284 20 H -0.260 1.260 21 C 0.100 3.900 22 N -0.588 5.588 23 C 0.658 3.342 24 O -0.575 6.575 25 O -0.355 6.355 26 C 0.136 3.864 27 C -0.183 4.183 28 C -0.143 4.143 29 C -0.181 4.181 30 H 0.071 0.929 31 H 0.059 0.941 32 H 0.064 0.936 33 H 0.072 0.928 34 H 0.084 0.916 35 H 0.076 0.924 36 H 0.073 0.927 37 H 0.394 0.606 38 H 0.392 0.608 39 H 0.023 0.977 40 H 0.018 0.982 41 H 0.267 0.733 42 H 0.070 0.930 43 H 0.100 0.900 44 H 0.061 0.939 45 H 0.068 0.932 46 H 0.086 0.914 47 H 0.067 0.933 48 H 0.079 0.921 49 H 0.070 0.930 50 H 0.086 0.914 51 H 0.068 0.932 52 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.204 25.490 2.352 25.941 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.048 3.952 3 H 0.123 0.877 4 C -0.164 4.164 5 C -0.168 4.168 6 C 0.048 3.952 7 H 0.109 0.891 8 N -0.406 5.406 9 C 0.394 3.606 10 O -0.478 6.478 11 N -0.374 5.374 12 C 0.116 3.884 13 C -0.580 4.580 14 H 0.097 0.903 15 C -0.126 4.126 16 N -0.531 5.531 17 Si 0.703 3.297 18 H -0.199 1.199 19 H -0.209 1.209 20 H -0.184 1.184 21 C -0.025 4.025 22 N -0.328 5.328 23 C 0.413 3.587 24 O -0.465 6.465 25 O -0.269 6.269 26 C 0.099 3.901 27 C -0.240 4.240 28 C -0.200 4.200 29 C -0.239 4.239 30 H 0.090 0.910 31 H 0.078 0.922 32 H 0.082 0.918 33 H 0.091 0.909 34 H 0.102 0.898 35 H 0.094 0.906 36 H 0.092 0.908 37 H 0.228 0.772 38 H 0.225 0.775 39 H 0.041 0.959 40 H 0.036 0.964 41 H 0.077 0.923 42 H 0.088 0.912 43 H 0.118 0.882 44 H 0.080 0.920 45 H 0.087 0.913 46 H 0.105 0.895 47 H 0.086 0.914 48 H 0.097 0.903 49 H 0.089 0.911 50 H 0.105 0.895 51 H 0.087 0.913 52 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -3.093 25.965 1.709 26.204 hybrid contribution 0.027 -0.464 -0.139 0.485 sum -3.066 25.501 1.570 25.733 Atomic orbital electron populations 1.22175 0.94626 1.02777 1.02563 1.21234 0.94145 0.97362 0.82484 0.87739 1.21906 1.02150 0.94965 0.97365 1.21881 1.01284 0.95627 0.97998 1.20957 1.01085 0.79523 0.93666 0.89106 1.45094 1.28243 1.06858 1.60360 1.16151 0.83233 0.81549 0.79711 1.90887 1.27063 1.78332 1.51512 1.45399 1.28534 1.05377 1.58064 1.19354 0.89968 0.87263 0.91812 1.21093 1.10778 0.89794 1.36345 0.90309 1.24781 0.97620 0.94760 0.95461 1.69879 1.39716 0.99391 1.44106 0.86819 0.83791 0.78953 0.80149 1.19868 1.20942 1.18408 1.22210 1.01356 0.78417 1.00468 1.46977 1.56936 1.09255 1.19653 1.17956 0.77216 0.83497 0.80031 1.90855 1.62029 1.13891 1.79704 1.86390 1.68714 1.42364 1.29477 1.22070 0.91079 0.90888 0.86081 1.22508 0.96697 1.01993 1.02788 1.21869 1.02430 0.99890 0.95799 1.22503 0.99685 0.98925 1.02737 0.91046 0.92233 0.91755 0.90947 0.89775 0.90561 0.90809 0.77199 0.77461 0.95888 0.96402 0.92279 0.91178 0.88164 0.91978 0.91287 0.89530 0.91439 0.90262 0.91086 0.89520 0.91256 0.92266 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.16 9.02 37.16 0.34 -0.82 16 2 C 0.15 1.34 3.21 -67.60 -0.22 1.12 16 3 H 0.10 1.03 7.00 -51.92 -0.36 0.66 16 4 C -0.13 -0.94 5.55 -26.62 -0.15 -1.09 16 5 C -0.13 -1.05 5.15 -26.66 -0.14 -1.19 16 6 C 0.15 1.84 2.60 -67.77 -0.18 1.67 16 7 H 0.09 1.35 7.58 -51.93 -0.39 0.96 16 8 N -0.75 -9.88 5.09 -58.52 -0.30 -10.18 16 9 C 0.69 13.12 8.53 -86.92 -0.74 12.38 16 10 O -0.60 -13.79 16.01 5.28 0.08 -13.70 16 11 N -0.72 -14.43 5.55 -66.42 -0.37 -14.80 16 12 C 0.24 5.87 4.50 -5.20 -0.02 5.84 16 13 C -0.54 -14.78 9.83 -34.44 -0.34 -15.12 16 14 H 0.08 2.23 7.84 -52.49 -0.41 1.82 16 15 C 0.08 2.18 5.47 -17.82 -0.10 2.09 16 16 N -0.89 -26.45 13.96 55.43 0.77 -25.67 16 17 Si 0.88 21.46 27.47 -169.99 -4.67 16.79 16 18 H -0.27 -6.60 7.11 56.52 0.40 -6.20 16 19 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 20 H -0.26 -6.34 6.54 56.52 0.37 -5.97 16 21 C 0.10 1.21 5.61 -3.71 -0.02 1.19 16 22 N -0.59 -6.85 2.68 -170.97 -0.46 -7.31 16 23 C 0.66 9.06 7.74 54.05 0.42 9.48 16 24 O -0.57 -8.38 11.29 -19.28 -0.22 -8.60 16 25 O -0.36 -5.03 8.53 -40.33 -0.34 -5.37 16 26 C 0.14 1.58 1.13 -90.62 -0.10 1.48 16 27 C -0.18 -2.04 8.37 37.16 0.31 -1.73 16 28 C -0.14 -1.44 8.85 37.16 0.33 -1.11 16 29 C -0.18 -1.88 8.37 37.15 0.31 -1.57 16 30 H 0.07 0.38 8.14 -51.93 -0.42 -0.05 16 31 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 32 H 0.06 0.44 5.72 -51.93 -0.30 0.14 16 33 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 34 H 0.08 0.45 8.14 -51.93 -0.42 0.03 16 35 H 0.08 0.60 8.14 -51.93 -0.42 0.18 16 36 H 0.07 0.49 6.51 -51.93 -0.34 0.15 16 37 H 0.39 4.00 8.62 -40.82 -0.35 3.65 16 38 H 0.39 6.81 8.34 -40.82 -0.34 6.47 16 39 H 0.02 0.60 7.20 -51.93 -0.37 0.23 16 40 H 0.02 0.46 7.57 -51.93 -0.39 0.07 16 41 H 0.27 7.41 8.31 -40.82 -0.34 7.07 16 42 H 0.07 0.75 7.48 -51.93 -0.39 0.36 16 43 H 0.10 1.54 6.93 -51.93 -0.36 1.18 16 44 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 45 H 0.07 0.61 8.14 -51.92 -0.42 0.19 16 46 H 0.09 1.10 5.88 -51.93 -0.31 0.79 16 47 H 0.07 0.68 8.14 -51.93 -0.42 0.25 16 48 H 0.08 0.61 8.14 -51.93 -0.42 0.19 16 49 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 50 H 0.09 1.05 5.88 -51.93 -0.31 0.74 16 51 H 0.07 0.58 8.14 -51.93 -0.42 0.15 16 52 H 0.06 0.60 8.14 -51.93 -0.42 0.17 16 LS Contribution 403.82 15.07 6.09 6.09 Total: -1.00 -33.81 403.82 -8.57 -42.38 By element: Atomic # 1 Polarization: 16.64 SS G_CDS: -8.86 Total: 7.77 kcal Atomic # 6 Polarization: 12.91 SS G_CDS: -0.30 Total: 12.61 kcal Atomic # 7 Polarization: -57.61 SS G_CDS: -0.35 Total: -57.96 kcal Atomic # 8 Polarization: -27.20 SS G_CDS: -0.48 Total: -27.68 kcal Atomic # 14 Polarization: 21.46 SS G_CDS: -4.67 Total: 16.79 kcal Total LS contribution 6.09 Total: 6.09 kcal Total: -33.81 -8.57 -42.38 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000875540531.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -75.267 kcal (2) G-P(sol) polarization free energy of solvation -33.813 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -109.080 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.571 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.384 kcal (6) G-S(sol) free energy of system = (1) + (5) -117.652 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds