Wall clock time and date at job start Wed Apr 1 2020 00:27:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09007 * 109.69850 * 2 1 4 4 C 1.53187 * 109.58683 * 120.35554 * 2 1 3 5 5 C 1.53036 * 109.33909 * 65.13579 * 4 2 1 6 6 C 1.53109 * 109.50477 * 61.34678 * 5 4 2 7 7 H 1.09001 * 109.48443 * 58.61442 * 6 5 4 8 8 N 1.46498 * 109.49311 * 178.69982 * 6 5 4 9 9 C 1.34772 * 120.00472 * 204.86066 * 8 6 5 10 10 O 1.21594 * 119.99734 * 359.97438 * 9 8 6 11 11 N 1.34779 * 120.00419 * 180.02562 * 9 8 6 12 12 C 1.46498 * 119.99947 * 179.97438 * 11 9 8 13 13 C 1.50698 * 109.46593 * 179.97438 * 12 11 9 14 14 H 1.07993 * 120.00701 * 359.97438 * 13 12 11 15 15 C 1.37883 * 119.99577 * 179.97438 * 13 12 11 16 16 N 1.31511 * 119.99888 * 179.97438 * 15 13 12 17 17 Si 1.86795 * 120.00307 * 359.97438 * 15 13 12 18 18 H 1.48505 * 109.47407 * 89.99713 * 17 15 13 19 19 H 1.48501 * 109.47374 * 210.00194 * 17 15 13 20 20 H 1.48505 * 109.47195 * 330.00208 * 17 15 13 21 21 C 1.53194 * 109.33021 * 298.65929 * 6 5 4 22 22 N 1.46925 * 108.77661 * 54.63469 * 21 6 5 23 23 C 1.34770 * 120.63591 * 126.41308 * 22 21 6 24 24 O 1.21505 * 120.00299 * 179.97438 * 23 22 21 25 25 O 1.34644 * 119.99533 * 359.97438 * 23 22 21 26 26 C 1.45198 * 116.99638 * 179.97438 * 25 23 22 27 27 C 1.53000 * 109.47086 * 60.00180 * 26 25 23 28 28 C 1.53002 * 109.46879 * 179.97438 * 26 25 23 29 29 C 1.52995 * 109.47407 * 300.00084 * 26 25 23 30 30 H 1.09003 * 109.47155 * 299.64706 * 1 2 3 31 31 H 1.09003 * 109.47257 * 59.64230 * 1 2 3 32 32 H 1.08996 * 109.47189 * 179.64428 * 1 2 3 33 33 H 1.09002 * 109.49796 * 185.10512 * 4 2 1 34 34 H 1.09000 * 109.49812 * 305.17236 * 4 2 1 35 35 H 1.08997 * 109.46472 * 181.39933 * 5 4 2 36 36 H 1.09003 * 109.46509 * 301.36375 * 5 4 2 37 37 H 0.97003 * 119.99891 * 24.85093 * 8 6 5 38 38 H 0.96998 * 119.99532 * 359.97438 * 11 9 8 39 39 H 1.09001 * 109.47344 * 299.99463 * 12 11 9 40 40 H 1.08993 * 109.47228 * 59.99913 * 12 11 9 41 41 H 0.97004 * 120.00202 * 179.97438 * 16 15 13 42 42 H 1.08995 * 109.58354 * 294.84465 * 21 6 5 43 43 H 1.09003 * 109.58278 * 174.41971 * 21 6 5 44 44 H 1.08995 * 109.47583 * 59.99743 * 27 26 25 45 45 H 1.09011 * 109.47112 * 179.97438 * 27 26 25 46 46 H 1.09003 * 109.47483 * 299.99306 * 27 26 25 47 47 H 1.08998 * 109.47193 * 60.00121 * 28 26 25 48 48 H 1.09006 * 109.47152 * 179.97438 * 28 26 25 49 49 H 1.08995 * 109.47126 * 299.99850 * 28 26 25 50 50 H 1.08994 * 109.47281 * 59.99802 * 29 26 25 51 51 H 1.09006 * 109.47488 * 180.02562 * 29 26 25 52 52 H 1.09006 * 109.46955 * 300.00205 * 29 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8974 1.0263 0.0000 4 6 2.0435 -0.7294 1.2454 5 6 1.6414 -2.2041 1.1709 6 6 2.2800 -2.8464 -0.0636 7 1 3.3639 -2.7474 -0.0053 8 7 1.9202 -4.2654 -0.1176 9 6 2.7137 -5.1375 -0.7705 10 8 3.7281 -4.7464 -1.3150 11 7 2.3824 -6.4430 -0.8207 12 6 3.2447 -7.3907 -1.5308 13 6 2.6545 -8.7742 -1.4372 14 1 1.7299 -8.9318 -0.9019 15 6 3.2951 -9.8388 -2.0350 16 7 2.7803 -11.0462 -1.9529 17 14 4.8940 -9.5663 -2.9615 18 1 6.0392 -9.7214 -2.0289 19 1 5.0082 -10.5635 -4.0559 20 1 4.9058 -8.1970 -3.5363 21 6 1.7691 -2.1409 -1.3238 22 7 2.0225 -0.6995 -1.1946 23 6 2.6936 -0.0315 -2.1536 24 8 2.8964 1.1607 -2.0351 25 8 3.1393 -0.6852 -3.2430 26 6 3.8536 0.0979 -4.2353 27 6 5.0944 0.7233 -3.5948 28 6 4.2795 -0.8096 -5.3912 29 6 2.9403 1.2050 -4.7653 30 1 -0.3633 0.5084 0.8932 31 1 -0.3634 0.5194 -0.8868 32 1 -0.3633 -1.0276 -0.0064 33 1 3.1297 -0.6503 1.2913 34 1 1.6079 -0.2781 2.1368 35 1 1.9843 -2.7198 2.0679 36 1 0.5565 -2.2816 1.1000 37 1 1.1108 -4.5775 0.3166 38 1 1.5730 -6.7549 -0.3866 39 1 3.3212 -7.0981 -2.5780 40 1 4.2367 -7.3880 -1.0794 41 1 3.2307 -11.7952 -2.3737 42 1 0.6987 -2.3156 -1.4317 43 1 2.2944 -2.5274 -2.1972 44 1 5.7451 -0.0654 -3.2173 45 1 5.6309 1.3109 -4.3400 46 1 4.7915 1.3698 -2.7712 47 1 3.3958 -1.2556 -5.8476 48 1 4.8153 -0.2217 -6.1364 49 1 4.9303 -1.5980 -5.0133 50 1 2.6373 1.8514 -3.9417 51 1 3.4764 1.7927 -5.5106 52 1 2.0563 0.7594 -5.2216 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000875540531.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:27:04 Heat of formation + Delta-G solvation = -141.633683 kcal Electronic energy + Delta-G solvation = -31630.203919 eV Core-core repulsion = 27435.674052 eV Total energy + Delta-G solvation = -4194.529867 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 341.215 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -42.11220 -41.08844 -39.83900 -37.79266 -36.24965 -35.63967 -35.27048 -34.39257 -33.54658 -31.82636 -29.65405 -28.49636 -28.39007 -28.32841 -25.72701 -24.61949 -23.88901 -22.90716 -21.83063 -21.10228 -20.17383 -19.62509 -18.92932 -18.26514 -17.76328 -17.59763 -17.16291 -16.64859 -16.37212 -16.22557 -16.02140 -15.64296 -15.42025 -15.20096 -15.03897 -14.60618 -14.50016 -14.35925 -14.27917 -14.15020 -13.96431 -13.40309 -13.23405 -13.14473 -13.03998 -13.00578 -12.92189 -12.90409 -12.71043 -12.53750 -12.42619 -12.33590 -11.99407 -11.92191 -11.79852 -11.62771 -11.45778 -11.41413 -11.22626 -11.08299 -10.90302 -10.46291 -9.90748 -9.54117 -8.38510 -6.44695 1.08302 1.33863 1.36175 1.49322 1.68147 1.84039 2.22203 2.29798 2.77580 2.97429 3.48466 3.63576 3.70647 3.76041 3.79116 3.90621 3.91694 3.94066 4.12712 4.34614 4.39762 4.51593 4.57248 4.58147 4.59342 4.66967 4.72279 4.73081 4.78060 4.81760 4.82905 4.93194 4.96421 5.05418 5.07345 5.08181 5.11028 5.18890 5.24042 5.27276 5.28108 5.38185 5.47053 5.48920 5.56863 5.61673 6.00589 6.22667 6.31049 6.57799 7.16515 7.23031 7.29918 7.69738 8.76179 Molecular weight = 341.21amu Principal moments of inertia in cm(-1) A = 0.011249 B = 0.003013 C = 0.002492 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2488.491075 B = 9289.807942 C =11231.766161 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.143 3.857 3 H 0.094 0.906 4 C -0.119 4.119 5 C -0.119 4.119 6 C 0.156 3.844 7 H 0.057 0.943 8 N -0.723 5.723 9 C 0.694 3.306 10 O -0.642 6.642 11 N -0.720 5.720 12 C 0.252 3.748 13 C -0.543 4.543 14 H 0.061 0.939 15 C 0.028 3.972 16 N -0.931 5.931 17 Si 0.935 3.065 18 H -0.266 1.266 19 H -0.273 1.273 20 H -0.262 1.262 21 C 0.107 3.893 22 N -0.585 5.585 23 C 0.648 3.352 24 O -0.588 6.588 25 O -0.376 6.376 26 C 0.122 3.878 27 C -0.176 4.176 28 C -0.139 4.139 29 C -0.172 4.172 30 H 0.097 0.903 31 H 0.046 0.954 32 H 0.071 0.929 33 H 0.056 0.944 34 H 0.118 0.882 35 H 0.087 0.913 36 H 0.101 0.899 37 H 0.415 0.585 38 H 0.406 0.594 39 H 0.009 0.991 40 H 0.007 0.993 41 H 0.272 0.728 42 H 0.091 0.909 43 H 0.063 0.937 44 H 0.049 0.951 45 H 0.094 0.906 46 H 0.068 0.932 47 H 0.065 0.935 48 H 0.108 0.892 49 H 0.054 0.946 50 H 0.067 0.933 51 H 0.093 0.907 52 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.075 26.924 3.074 27.570 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C 0.042 3.958 3 H 0.112 0.888 4 C -0.157 4.157 5 C -0.157 4.157 6 C 0.049 3.951 7 H 0.075 0.925 8 N -0.380 5.380 9 C 0.394 3.606 10 O -0.524 6.524 11 N -0.374 5.374 12 C 0.128 3.872 13 C -0.581 4.581 14 H 0.079 0.921 15 C -0.173 4.173 16 N -0.570 5.570 17 Si 0.759 3.241 18 H -0.191 1.191 19 H -0.198 1.198 20 H -0.186 1.186 21 C -0.018 4.018 22 N -0.325 5.325 23 C 0.403 3.597 24 O -0.480 6.480 25 O -0.290 6.290 26 C 0.085 3.915 27 C -0.234 4.234 28 C -0.196 4.196 29 C -0.230 4.230 30 H 0.115 0.885 31 H 0.065 0.935 32 H 0.090 0.910 33 H 0.074 0.926 34 H 0.136 0.864 35 H 0.105 0.895 36 H 0.119 0.881 37 H 0.252 0.748 38 H 0.242 0.758 39 H 0.027 0.973 40 H 0.025 0.975 41 H 0.081 0.919 42 H 0.109 0.891 43 H 0.082 0.918 44 H 0.068 0.932 45 H 0.113 0.887 46 H 0.087 0.913 47 H 0.084 0.916 48 H 0.126 0.874 49 H 0.073 0.927 50 H 0.086 0.914 51 H 0.112 0.888 52 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -4.028 27.424 2.485 27.830 hybrid contribution 0.255 -0.850 -0.331 0.947 sum -3.773 26.575 2.154 26.928 Atomic orbital electron populations 1.22147 0.92605 1.03439 1.03257 1.21508 0.95656 0.96738 0.81852 0.88828 1.21911 1.01409 0.94554 0.97861 1.21868 1.02519 0.95423 0.95887 1.21059 0.99667 0.78610 0.95750 0.92465 1.44838 1.27876 1.06682 1.58613 1.16263 0.83198 0.81494 0.79656 1.90865 1.29228 1.78963 1.53349 1.45081 1.28629 1.05461 1.58182 1.18919 0.90024 0.86867 0.91411 1.21276 1.10139 0.91099 1.35590 0.92054 1.25547 1.00747 0.94557 0.96400 1.69973 1.41356 1.00279 1.45395 0.85899 0.80150 0.78814 0.79277 1.19064 1.19797 1.18604 1.22046 1.01923 0.78732 0.99069 1.47171 1.56373 1.09014 1.19990 1.18214 0.77529 0.83602 0.80374 1.90837 1.62694 1.14365 1.80072 1.86394 1.69047 1.43482 1.30103 1.22410 0.91369 0.91553 0.86131 1.22449 0.96555 1.01472 1.02889 1.21895 1.02300 0.99653 0.95759 1.22418 0.99726 0.98294 1.02520 0.88473 0.93499 0.90970 0.92561 0.86352 0.89480 0.88091 0.74789 0.75842 0.97337 0.97494 0.91864 0.89065 0.91847 0.93182 0.88715 0.91312 0.91604 0.87386 0.92660 0.91362 0.88833 0.92224 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.76 9.02 71.98 0.65 -1.11 16 2 C 0.14 2.33 3.21 44.97 0.14 2.47 16 3 H 0.09 1.76 7.00 -2.38 -0.02 1.75 16 4 C -0.12 -1.48 5.55 30.67 0.17 -1.31 16 5 C -0.12 -1.55 5.15 30.64 0.16 -1.39 16 6 C 0.16 3.55 2.60 45.09 0.12 3.67 16 7 H 0.06 1.73 7.58 -2.39 -0.02 1.72 16 8 N -0.72 -18.03 5.09 -457.33 -2.33 -20.36 16 9 C 0.69 26.07 8.53 179.06 1.53 27.60 16 10 O -0.64 -30.17 16.01 -4.01 -0.06 -30.23 16 11 N -0.72 -28.53 5.55 -482.30 -2.68 -31.20 16 12 C 0.25 12.45 4.50 85.63 0.38 12.84 16 13 C -0.54 -29.81 9.83 25.60 0.25 -29.56 16 14 H 0.06 3.51 7.84 -2.91 -0.02 3.48 16 15 C 0.03 1.57 5.47 84.66 0.46 2.03 16 16 N -0.93 -55.40 13.96 21.45 0.30 -55.10 16 17 Si 0.93 44.29 27.47 68.60 1.88 46.18 16 18 H -0.27 -12.21 7.11 99.48 0.71 -11.50 16 19 H -0.27 -12.38 7.11 99.48 0.71 -11.67 16 20 H -0.26 -12.40 6.54 99.48 0.65 -11.75 16 21 C 0.11 2.55 5.61 86.36 0.48 3.04 16 22 N -0.59 -13.57 2.68 -925.23 -2.48 -16.05 16 23 C 0.65 18.42 7.74 129.79 1.00 19.42 16 24 O -0.59 -17.69 11.29 19.82 0.22 -17.46 16 25 O -0.38 -11.12 8.53 -55.53 -0.47 -11.60 16 26 C 0.12 2.87 1.13 -10.79 -0.01 2.85 16 27 C -0.18 -3.99 8.37 71.98 0.60 -3.38 16 28 C -0.14 -2.78 8.85 71.98 0.64 -2.14 16 29 C -0.17 -3.50 8.37 71.98 0.60 -2.90 16 30 H 0.10 0.62 8.14 -2.39 -0.02 0.60 16 31 H 0.05 0.66 8.14 -2.39 -0.02 0.64 16 32 H 0.07 0.70 5.72 -2.39 -0.01 0.69 16 33 H 0.06 0.91 8.14 -2.39 -0.02 0.89 16 34 H 0.12 0.76 8.14 -2.39 -0.02 0.74 16 35 H 0.09 1.04 8.14 -2.39 -0.02 1.02 16 36 H 0.10 0.84 6.51 -2.39 -0.02 0.83 16 37 H 0.41 7.21 8.62 -92.71 -0.80 6.41 16 38 H 0.41 13.71 8.34 -92.71 -0.77 12.93 16 39 H 0.01 0.46 7.20 -2.39 -0.02 0.44 16 40 H 0.01 0.37 7.57 -2.39 -0.02 0.35 16 41 H 0.27 15.10 8.31 -92.71 -0.77 14.33 16 42 H 0.09 1.79 7.48 -2.39 -0.02 1.77 16 43 H 0.06 2.02 6.93 -2.39 -0.02 2.01 16 44 H 0.05 1.22 8.14 -2.39 -0.02 1.20 16 45 H 0.09 1.58 8.14 -2.38 -0.02 1.56 16 46 H 0.07 1.81 5.88 -2.39 -0.01 1.79 16 47 H 0.06 1.32 8.14 -2.39 -0.02 1.30 16 48 H 0.11 1.48 8.14 -2.38 -0.02 1.46 16 49 H 0.05 1.27 8.14 -2.39 -0.02 1.25 16 50 H 0.07 1.66 5.88 -2.39 -0.01 1.65 16 51 H 0.09 1.40 8.14 -2.38 -0.02 1.38 16 52 H 0.06 1.18 8.14 -2.38 -0.02 1.16 16 Total: -1.00 -76.14 403.82 0.88 -75.26 By element: Atomic # 1 Polarization: 29.13 SS G_CDS: -0.70 Total: 28.43 kcal Atomic # 6 Polarization: 24.95 SS G_CDS: 7.19 Total: 32.13 kcal Atomic # 7 Polarization: -115.53 SS G_CDS: -7.18 Total: -122.71 kcal Atomic # 8 Polarization: -58.97 SS G_CDS: -0.31 Total: -59.29 kcal Atomic # 14 Polarization: 44.29 SS G_CDS: 1.88 Total: 46.18 kcal Total: -76.14 0.88 -75.26 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000875540531.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -66.373 kcal (2) G-P(sol) polarization free energy of solvation -76.137 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -142.510 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.877 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.261 kcal (6) G-S(sol) free energy of system = (1) + (5) -141.634 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds