Wall clock time and date at job start Wed Apr 1 2020 00:27:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09001 * 109.70211 * 2 1 4 4 C 1.53615 * 109.66546 * 120.58959 * 2 1 3 5 5 C 1.53045 * 109.24269 * 174.55007 * 4 2 1 6 6 C 1.53046 * 109.53669 * 298.51082 * 5 4 2 7 7 H 1.08996 * 109.50182 * 301.41646 * 6 5 4 8 8 N 1.46500 * 109.49621 * 181.31477 * 6 5 4 9 9 C 1.34777 * 119.99636 * 155.16276 * 8 6 5 10 10 O 1.21581 * 120.00204 * 0.02562 * 9 8 6 11 11 N 1.34778 * 119.99888 * 179.97438 * 9 8 6 12 12 C 1.46495 * 120.00343 * 180.02562 * 11 9 8 13 13 C 1.50696 * 109.47432 * 179.97438 * 12 11 9 14 14 H 1.08001 * 119.99667 * 0.02562 * 13 12 11 15 15 C 1.37880 * 120.00091 * 179.97438 * 13 12 11 16 16 N 1.31513 * 119.99959 * 179.97438 * 15 13 12 17 17 Si 1.86800 * 119.99940 * 0.02562 * 15 13 12 18 18 H 1.48494 * 109.47490 * 89.99471 * 17 15 13 19 19 H 1.48500 * 109.46895 * 209.99778 * 17 15 13 20 20 H 1.48498 * 109.47068 * 329.99522 * 17 15 13 21 21 C 1.53194 * 109.31003 * 61.36502 * 6 5 4 22 22 N 1.46924 * 109.58513 * 239.64774 * 2 1 3 23 23 C 1.34771 * 120.63268 * 6.62203 * 22 2 1 24 24 O 1.21511 * 119.99893 * 354.61759 * 23 22 2 25 25 O 1.34640 * 120.00203 * 174.61912 * 23 22 2 26 26 C 1.45197 * 117.00066 * 180.02562 * 25 23 22 27 27 C 1.53000 * 109.47255 * 59.99961 * 26 25 23 28 28 C 1.53006 * 109.47125 * 179.97438 * 26 25 23 29 29 C 1.53004 * 109.47136 * 299.99695 * 26 25 23 30 30 H 1.09002 * 109.47141 * 176.18846 * 1 2 3 31 31 H 1.08996 * 109.47001 * 296.18666 * 1 2 3 32 32 H 1.08999 * 109.47323 * 56.18440 * 1 2 3 33 33 H 1.09005 * 109.63362 * 54.56291 * 4 2 1 34 34 H 1.08998 * 109.46446 * 294.43228 * 4 2 1 35 35 H 1.09003 * 109.46099 * 178.49367 * 5 4 2 36 36 H 1.09000 * 109.44821 * 58.52489 * 5 4 2 37 37 H 0.97001 * 120.00004 * 335.16004 * 8 6 5 38 38 H 0.97009 * 119.99899 * 0.02562 * 11 9 8 39 39 H 1.08997 * 109.46987 * 300.00309 * 12 11 9 40 40 H 1.09000 * 109.47176 * 59.99948 * 12 11 9 41 41 H 0.97001 * 120.00099 * 179.97438 * 16 15 13 42 42 H 1.09004 * 109.58629 * 185.57608 * 21 6 5 43 43 H 1.09006 * 109.70435 * 65.22031 * 21 6 5 44 44 H 1.08992 * 109.47267 * 59.99924 * 27 26 25 45 45 H 1.09000 * 109.46828 * 179.97438 * 27 26 25 46 46 H 1.08995 * 109.47116 * 299.99672 * 27 26 25 47 47 H 1.08997 * 109.47401 * 59.99760 * 28 26 25 48 48 H 1.08998 * 109.47144 * 180.02562 * 28 26 25 49 49 H 1.09005 * 109.46796 * 299.99537 * 28 26 25 50 50 H 1.08998 * 109.46981 * 59.99878 * 29 26 25 51 51 H 1.08998 * 109.47026 * 179.97438 * 29 26 25 52 52 H 1.09002 * 109.46812 * 300.00462 * 29 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8974 1.0262 0.0000 4 6 2.0469 -0.7361 1.2452 5 6 3.5712 -0.8496 1.1676 6 6 3.9615 -1.6627 -0.0689 7 1 3.5062 -2.6514 -0.0129 8 7 5.4192 -1.7975 -0.1253 9 6 5.9751 -2.8349 -0.7819 10 8 5.2668 -3.6587 -1.3278 11 7 7.3162 -2.9587 -0.8343 12 6 7.9205 -4.0860 -1.5484 13 6 9.4217 -3.9916 -1.4577 14 1 9.8799 -3.1738 -0.9213 15 6 10.2103 -4.9498 -2.0586 16 7 11.5205 -4.8671 -1.9798 17 14 9.4178 -6.3646 -2.9858 18 1 9.2317 -5.9817 -4.4084 19 1 10.2937 -7.5611 -2.9057 20 1 8.0981 -6.6757 -2.3802 21 6 3.4656 -0.9419 -1.3264 22 7 2.0225 -0.6995 -1.1945 23 6 1.1674 -1.1061 -2.1536 24 8 -0.0306 -0.9835 -1.9912 25 8 1.6405 -1.6483 -3.2916 26 6 0.6619 -2.0631 -4.2807 27 6 -0.1680 -0.8536 -4.7156 28 6 1.3825 -2.6502 -5.4961 29 6 -0.2600 -3.1223 -3.6730 30 1 -0.3633 -1.0254 -0.0683 31 1 -0.3633 0.4535 0.9222 32 1 -0.3634 0.5719 -0.8538 33 1 1.6096 -1.7337 1.2889 34 1 1.7689 -0.1775 2.1390 35 1 3.9443 -1.3479 2.0624 36 1 4.0063 0.1474 1.0988 37 1 5.9843 -1.1400 0.3099 38 1 7.8813 -2.3012 -0.3990 39 1 7.5870 -5.0214 -1.0992 40 1 7.6176 -4.0574 -2.5951 41 1 12.0753 -5.5413 -2.4022 42 1 3.6532 -1.5637 -2.2019 43 1 3.9874 0.0089 -1.4349 44 1 0.4886 -0.0991 -5.1485 45 1 -0.9024 -1.1650 -5.4585 46 1 -0.6814 -0.4350 -3.8500 47 1 1.9740 -3.5118 -5.1867 48 1 0.6478 -2.9612 -6.2388 49 1 2.0389 -1.8952 -5.9289 50 1 -0.7733 -2.7038 -2.8074 51 1 -0.9949 -3.4334 -4.4154 52 1 0.3313 -3.9840 -3.3632 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000875540532.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:27:09 Heat of formation + Delta-G solvation = -103.103470 kcal Electronic energy + Delta-G solvation = -31669.988424 eV Core-core repulsion = 27477.129353 eV Total energy + Delta-G solvation = -4192.859072 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 341.215 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -41.22146 -39.73619 -38.67524 -36.80358 -34.67989 -34.43325 -34.08855 -32.62835 -32.38987 -31.03059 -28.02279 -27.52803 -27.49968 -26.90595 -24.88906 -23.33729 -22.34095 -21.40192 -20.76797 -20.25288 -19.41484 -18.21541 -17.65237 -16.84877 -16.41032 -16.30926 -15.94064 -15.69902 -15.00365 -14.76673 -14.68169 -14.53755 -14.24618 -14.08109 -13.84896 -13.67326 -13.52064 -13.12650 -12.88364 -12.78274 -12.46875 -12.39734 -12.34795 -12.31686 -12.23278 -11.96482 -11.88591 -11.67154 -11.39028 -11.35357 -11.28532 -11.09283 -10.98900 -10.81468 -10.74615 -10.40870 -9.96441 -9.62473 -9.46125 -9.42469 -9.18320 -8.77606 -8.64870 -8.03399 -6.20707 -4.22573 2.00670 2.73140 3.13132 3.28307 3.35392 3.43894 3.70067 3.79113 4.34596 4.46456 4.52216 4.56156 4.59706 4.64719 4.77826 4.80039 4.94832 5.00880 5.13268 5.15096 5.17929 5.32620 5.35005 5.39820 5.42560 5.52094 5.53547 5.56932 5.65233 5.67954 5.71476 5.74664 5.82554 5.89145 5.96062 6.07115 6.11428 6.14166 6.20622 6.34956 6.48242 6.72040 6.73888 7.11901 7.23407 7.27509 7.39937 7.55313 8.27032 8.28039 8.67984 8.81061 9.18855 9.40767 10.91285 Molecular weight = 341.21amu Principal moments of inertia in cm(-1) A = 0.012037 B = 0.002934 C = 0.002455 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2325.682315 B = 9540.455315 C =11400.792502 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C 0.156 3.844 3 H 0.076 0.924 4 C -0.127 4.127 5 C -0.129 4.129 6 C 0.155 3.845 7 H 0.091 0.909 8 N -0.749 5.749 9 C 0.694 3.306 10 O -0.599 6.599 11 N -0.722 5.722 12 C 0.239 3.761 13 C -0.542 4.542 14 H 0.079 0.921 15 C 0.077 3.923 16 N -0.894 5.894 17 Si 0.877 3.123 18 H -0.273 1.273 19 H -0.284 1.284 20 H -0.260 1.260 21 C 0.101 3.899 22 N -0.591 5.591 23 C 0.656 3.344 24 O -0.566 6.566 25 O -0.359 6.359 26 C 0.137 3.863 27 C -0.181 4.181 28 C -0.143 4.143 29 C -0.182 4.182 30 H 0.075 0.925 31 H 0.045 0.955 32 H 0.073 0.927 33 H 0.073 0.927 34 H 0.083 0.917 35 H 0.076 0.924 36 H 0.071 0.929 37 H 0.395 0.605 38 H 0.392 0.608 39 H 0.023 0.977 40 H 0.019 0.981 41 H 0.267 0.733 42 H 0.100 0.900 43 H 0.070 0.930 44 H 0.057 0.943 45 H 0.068 0.932 46 H 0.087 0.913 47 H 0.070 0.930 48 H 0.078 0.922 49 H 0.066 0.934 50 H 0.086 0.914 51 H 0.067 0.933 52 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.329 12.196 2.196 26.416 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C 0.054 3.946 3 H 0.094 0.906 4 C -0.166 4.166 5 C -0.167 4.167 6 C 0.048 3.952 7 H 0.109 0.891 8 N -0.406 5.406 9 C 0.394 3.606 10 O -0.478 6.478 11 N -0.374 5.374 12 C 0.116 3.884 13 C -0.580 4.580 14 H 0.097 0.903 15 C -0.126 4.126 16 N -0.531 5.531 17 Si 0.703 3.297 18 H -0.198 1.198 19 H -0.210 1.210 20 H -0.184 1.184 21 C -0.024 4.024 22 N -0.332 5.332 23 C 0.412 3.588 24 O -0.456 6.456 25 O -0.274 6.274 26 C 0.100 3.900 27 C -0.238 4.238 28 C -0.200 4.200 29 C -0.240 4.240 30 H 0.094 0.906 31 H 0.063 0.937 32 H 0.091 0.909 33 H 0.091 0.909 34 H 0.101 0.899 35 H 0.095 0.905 36 H 0.089 0.911 37 H 0.228 0.772 38 H 0.226 0.774 39 H 0.041 0.959 40 H 0.037 0.963 41 H 0.077 0.923 42 H 0.118 0.882 43 H 0.088 0.912 44 H 0.077 0.923 45 H 0.087 0.913 46 H 0.105 0.895 47 H 0.089 0.911 48 H 0.097 0.903 49 H 0.085 0.915 50 H 0.105 0.895 51 H 0.086 0.914 52 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -24.149 11.290 1.574 26.704 hybrid contribution 0.495 -0.152 -0.168 0.545 sum -23.653 11.138 1.406 26.182 Atomic orbital electron populations 1.22244 0.92110 1.04322 1.00808 1.21416 0.96143 0.94615 0.82377 0.90570 1.22068 0.95075 1.01956 0.97511 1.21845 0.96176 1.00674 0.97998 1.20945 0.80388 1.00247 0.93657 0.89092 1.45095 1.06265 1.29022 1.60179 1.16147 0.83145 0.81618 0.79717 1.90882 1.61471 1.43940 1.51534 1.45402 1.03435 1.30665 1.57864 1.19354 0.93303 0.84196 0.91551 1.21093 0.88296 1.12343 1.36279 0.90307 1.24780 0.94665 0.97678 0.95497 1.69880 1.03636 1.35512 1.44062 0.86817 0.80071 0.81959 0.80855 1.19840 1.20951 1.18433 1.22223 0.78757 1.00899 1.00482 1.46968 1.06874 1.59946 1.19363 1.18061 0.84009 0.76578 0.80120 1.90928 1.14080 1.60602 1.80017 1.86384 1.40913 1.73759 1.26309 1.22041 0.87321 0.94508 0.86147 1.22502 1.00404 0.97626 1.03275 1.21873 1.01137 1.01893 0.95116 1.22504 0.99843 0.98531 1.03082 0.90630 0.93663 0.90856 0.90866 0.89879 0.90519 0.91054 0.77164 0.77447 0.95936 0.96348 0.92278 0.88156 0.91215 0.92344 0.91342 0.89462 0.91126 0.90305 0.91498 0.89475 0.91370 0.92011 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.29 7.60 37.16 0.28 -1.00 16 2 C 0.16 1.39 3.51 -67.38 -0.24 1.16 16 3 H 0.08 0.58 8.14 -51.93 -0.42 0.16 16 4 C -0.13 -0.98 5.40 -26.39 -0.14 -1.12 16 5 C -0.13 -1.05 5.35 -26.68 -0.14 -1.20 16 6 C 0.15 1.85 2.60 -67.81 -0.18 1.67 16 7 H 0.09 1.36 7.58 -51.93 -0.39 0.96 16 8 N -0.75 -9.93 5.09 -58.56 -0.30 -10.23 16 9 C 0.69 13.15 8.53 -86.92 -0.74 12.41 16 10 O -0.60 -13.82 16.01 5.29 0.08 -13.73 16 11 N -0.72 -14.45 5.55 -66.42 -0.37 -14.82 16 12 C 0.24 5.87 4.50 -5.20 -0.02 5.85 16 13 C -0.54 -14.80 9.83 -34.44 -0.34 -15.13 16 14 H 0.08 2.23 7.84 -52.49 -0.41 1.82 16 15 C 0.08 2.18 5.47 -17.82 -0.10 2.09 16 16 N -0.89 -26.46 13.96 55.43 0.77 -25.69 16 17 Si 0.88 21.47 27.47 -169.99 -4.67 16.80 16 18 H -0.27 -6.58 7.11 56.52 0.40 -6.18 16 19 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 20 H -0.26 -6.35 6.54 56.52 0.37 -5.98 16 21 C 0.10 1.22 6.00 -3.71 -0.02 1.20 16 22 N -0.59 -6.82 2.97 -170.71 -0.51 -7.32 16 23 C 0.66 8.70 7.64 54.05 0.41 9.12 16 24 O -0.57 -7.55 7.28 -19.28 -0.14 -7.69 16 25 O -0.36 -4.96 8.55 -40.32 -0.34 -5.30 16 26 C 0.14 1.55 1.13 -90.61 -0.10 1.45 16 27 C -0.18 -1.81 8.37 37.16 0.31 -1.49 16 28 C -0.14 -1.42 8.85 37.16 0.33 -1.09 16 29 C -0.18 -1.99 8.37 37.16 0.31 -1.68 16 30 H 0.07 0.85 6.73 -51.93 -0.35 0.50 16 31 H 0.04 0.33 8.14 -51.93 -0.42 -0.09 16 32 H 0.07 0.79 6.76 -51.93 -0.35 0.44 16 33 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 34 H 0.08 0.47 8.14 -51.93 -0.42 0.05 16 35 H 0.08 0.61 8.14 -51.93 -0.42 0.19 16 36 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 37 H 0.39 4.03 8.62 -40.82 -0.35 3.68 16 38 H 0.39 6.83 8.34 -40.82 -0.34 6.49 16 39 H 0.02 0.59 7.20 -51.93 -0.37 0.22 16 40 H 0.02 0.48 7.57 -51.93 -0.39 0.08 16 41 H 0.27 7.41 8.31 -40.82 -0.34 7.07 16 42 H 0.10 1.53 6.96 -51.93 -0.36 1.17 16 43 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 44 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 45 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 46 H 0.09 1.00 5.88 -51.93 -0.31 0.69 16 47 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 48 H 0.08 0.60 8.14 -51.93 -0.42 0.18 16 49 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 50 H 0.09 1.07 5.88 -51.93 -0.31 0.76 16 51 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 52 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 LS Contribution 402.44 15.07 6.06 6.06 Total: -1.00 -33.17 402.44 -8.80 -41.98 By element: Atomic # 1 Polarization: 16.76 SS G_CDS: -9.02 Total: 7.73 kcal Atomic # 6 Polarization: 12.60 SS G_CDS: -0.38 Total: 12.22 kcal Atomic # 7 Polarization: -57.67 SS G_CDS: -0.40 Total: -58.07 kcal Atomic # 8 Polarization: -26.33 SS G_CDS: -0.40 Total: -26.73 kcal Atomic # 14 Polarization: 21.47 SS G_CDS: -4.67 Total: 16.80 kcal Total LS contribution 6.06 Total: 6.06 kcal Total: -33.17 -8.80 -41.98 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000875540532.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -61.128 kcal (2) G-P(sol) polarization free energy of solvation -33.172 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.300 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.804 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.976 kcal (6) G-S(sol) free energy of system = (1) + (5) -103.103 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds