Wall clock time and date at job start Wed Apr 1 2020 00:27:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09001 * 109.70211 * 2 1 4 4 C 1.53615 * 109.66546 * 120.58959 * 2 1 3 5 5 C 1.53045 * 109.24269 * 174.55007 * 4 2 1 6 6 C 1.53046 * 109.53669 * 298.51082 * 5 4 2 7 7 H 1.08996 * 109.50182 * 301.41646 * 6 5 4 8 8 N 1.46500 * 109.49621 * 181.31477 * 6 5 4 9 9 C 1.34777 * 119.99636 * 155.16276 * 8 6 5 10 10 O 1.21581 * 120.00204 * 0.02562 * 9 8 6 11 11 N 1.34778 * 119.99888 * 179.97438 * 9 8 6 12 12 C 1.46495 * 120.00343 * 180.02562 * 11 9 8 13 13 C 1.50696 * 109.47432 * 179.97438 * 12 11 9 14 14 H 1.08001 * 119.99667 * 0.02562 * 13 12 11 15 15 C 1.37880 * 120.00091 * 179.97438 * 13 12 11 16 16 N 1.31513 * 119.99959 * 179.97438 * 15 13 12 17 17 Si 1.86800 * 119.99940 * 0.02562 * 15 13 12 18 18 H 1.48494 * 109.47490 * 89.99471 * 17 15 13 19 19 H 1.48500 * 109.46895 * 209.99778 * 17 15 13 20 20 H 1.48498 * 109.47068 * 329.99522 * 17 15 13 21 21 C 1.53194 * 109.31003 * 61.36502 * 6 5 4 22 22 N 1.46924 * 109.58513 * 239.64774 * 2 1 3 23 23 C 1.34771 * 120.63268 * 6.62203 * 22 2 1 24 24 O 1.21511 * 119.99893 * 354.61759 * 23 22 2 25 25 O 1.34640 * 120.00203 * 174.61912 * 23 22 2 26 26 C 1.45197 * 117.00066 * 180.02562 * 25 23 22 27 27 C 1.53000 * 109.47255 * 59.99961 * 26 25 23 28 28 C 1.53006 * 109.47125 * 179.97438 * 26 25 23 29 29 C 1.53004 * 109.47136 * 299.99695 * 26 25 23 30 30 H 1.09002 * 109.47141 * 176.18846 * 1 2 3 31 31 H 1.08996 * 109.47001 * 296.18666 * 1 2 3 32 32 H 1.08999 * 109.47323 * 56.18440 * 1 2 3 33 33 H 1.09005 * 109.63362 * 54.56291 * 4 2 1 34 34 H 1.08998 * 109.46446 * 294.43228 * 4 2 1 35 35 H 1.09003 * 109.46099 * 178.49367 * 5 4 2 36 36 H 1.09000 * 109.44821 * 58.52489 * 5 4 2 37 37 H 0.97001 * 120.00004 * 335.16004 * 8 6 5 38 38 H 0.97009 * 119.99899 * 0.02562 * 11 9 8 39 39 H 1.08997 * 109.46987 * 300.00309 * 12 11 9 40 40 H 1.09000 * 109.47176 * 59.99948 * 12 11 9 41 41 H 0.97001 * 120.00099 * 179.97438 * 16 15 13 42 42 H 1.09004 * 109.58629 * 185.57608 * 21 6 5 43 43 H 1.09006 * 109.70435 * 65.22031 * 21 6 5 44 44 H 1.08992 * 109.47267 * 59.99924 * 27 26 25 45 45 H 1.09000 * 109.46828 * 179.97438 * 27 26 25 46 46 H 1.08995 * 109.47116 * 299.99672 * 27 26 25 47 47 H 1.08997 * 109.47401 * 59.99760 * 28 26 25 48 48 H 1.08998 * 109.47144 * 180.02562 * 28 26 25 49 49 H 1.09005 * 109.46796 * 299.99537 * 28 26 25 50 50 H 1.08998 * 109.46981 * 59.99878 * 29 26 25 51 51 H 1.08998 * 109.47026 * 179.97438 * 29 26 25 52 52 H 1.09002 * 109.46812 * 300.00462 * 29 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8974 1.0262 0.0000 4 6 2.0469 -0.7361 1.2452 5 6 3.5712 -0.8496 1.1676 6 6 3.9615 -1.6627 -0.0689 7 1 3.5062 -2.6514 -0.0129 8 7 5.4192 -1.7975 -0.1253 9 6 5.9751 -2.8349 -0.7819 10 8 5.2668 -3.6587 -1.3278 11 7 7.3162 -2.9587 -0.8343 12 6 7.9205 -4.0860 -1.5484 13 6 9.4217 -3.9916 -1.4577 14 1 9.8799 -3.1738 -0.9213 15 6 10.2103 -4.9498 -2.0586 16 7 11.5205 -4.8671 -1.9798 17 14 9.4178 -6.3646 -2.9858 18 1 9.2317 -5.9817 -4.4084 19 1 10.2937 -7.5611 -2.9057 20 1 8.0981 -6.6757 -2.3802 21 6 3.4656 -0.9419 -1.3264 22 7 2.0225 -0.6995 -1.1945 23 6 1.1674 -1.1061 -2.1536 24 8 -0.0306 -0.9835 -1.9912 25 8 1.6405 -1.6483 -3.2916 26 6 0.6619 -2.0631 -4.2807 27 6 -0.1680 -0.8536 -4.7156 28 6 1.3825 -2.6502 -5.4961 29 6 -0.2600 -3.1223 -3.6730 30 1 -0.3633 -1.0254 -0.0683 31 1 -0.3633 0.4535 0.9222 32 1 -0.3634 0.5719 -0.8538 33 1 1.6096 -1.7337 1.2889 34 1 1.7689 -0.1775 2.1390 35 1 3.9443 -1.3479 2.0624 36 1 4.0063 0.1474 1.0988 37 1 5.9843 -1.1400 0.3099 38 1 7.8813 -2.3012 -0.3990 39 1 7.5870 -5.0214 -1.0992 40 1 7.6176 -4.0574 -2.5951 41 1 12.0753 -5.5413 -2.4022 42 1 3.6532 -1.5637 -2.2019 43 1 3.9874 0.0089 -1.4349 44 1 0.4886 -0.0991 -5.1485 45 1 -0.9024 -1.1650 -5.4585 46 1 -0.6814 -0.4350 -3.8500 47 1 1.9740 -3.5118 -5.1867 48 1 0.6478 -2.9612 -6.2388 49 1 2.0389 -1.8952 -5.9289 50 1 -0.7733 -2.7038 -2.8074 51 1 -0.9949 -3.4334 -4.4154 52 1 0.3313 -3.9840 -3.3632 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000875540532.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:27:08 Heat of formation + Delta-G solvation = -126.658801 kcal Electronic energy + Delta-G solvation = -31671.009860 eV Core-core repulsion = 27477.129353 eV Total energy + Delta-G solvation = -4193.880507 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 341.215 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -42.16476 -41.06474 -39.73823 -37.83008 -36.20679 -35.59117 -35.29726 -34.39913 -33.45476 -32.15187 -29.73468 -28.37074 -28.32855 -28.00760 -25.81270 -24.39615 -23.91013 -22.52314 -21.84921 -21.54513 -20.37470 -19.81016 -18.61092 -18.31747 -17.82215 -17.36063 -17.17221 -16.70288 -16.37593 -16.25063 -15.77608 -15.55824 -15.45135 -15.22922 -15.05026 -14.69705 -14.52527 -14.46916 -14.37685 -14.13244 -13.69300 -13.57042 -13.21784 -13.20730 -13.12203 -13.01150 -12.84971 -12.75375 -12.70621 -12.54774 -12.28201 -12.13458 -12.03633 -11.92595 -11.87793 -11.68016 -11.62490 -11.33399 -11.25441 -10.90586 -10.48489 -10.29067 -9.85881 -9.50476 -8.38791 -6.45014 1.12359 1.33676 1.35909 1.49019 1.72179 1.85956 2.21773 2.29514 2.79371 2.97111 3.48889 3.64893 3.73055 3.77711 3.80295 3.84082 3.93533 3.98583 4.17433 4.34954 4.38329 4.51247 4.59755 4.62691 4.66195 4.70021 4.73617 4.73876 4.81095 4.85016 4.85460 4.90109 4.99408 5.06975 5.07178 5.09875 5.16949 5.25933 5.26892 5.28997 5.32244 5.35971 5.45162 5.56045 5.58345 5.68603 6.00268 6.30028 6.31971 6.57443 7.16182 7.29319 7.30504 7.69153 8.75910 Molecular weight = 341.21amu Principal moments of inertia in cm(-1) A = 0.012037 B = 0.002934 C = 0.002455 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2325.682315 B = 9540.455315 C =11400.792502 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C 0.150 3.850 3 H 0.101 0.899 4 C -0.121 4.121 5 C -0.118 4.118 6 C 0.156 3.844 7 H 0.056 0.944 8 N -0.723 5.723 9 C 0.694 3.306 10 O -0.642 6.642 11 N -0.720 5.720 12 C 0.252 3.748 13 C -0.543 4.543 14 H 0.061 0.939 15 C 0.028 3.972 16 N -0.931 5.931 17 Si 0.935 3.065 18 H -0.265 1.265 19 H -0.273 1.273 20 H -0.262 1.262 21 C 0.107 3.893 22 N -0.590 5.590 23 C 0.645 3.355 24 O -0.572 6.572 25 O -0.381 6.381 26 C 0.124 3.876 27 C -0.171 4.171 28 C -0.140 4.140 29 C -0.176 4.176 30 H 0.050 0.950 31 H 0.071 0.929 32 H 0.056 0.944 33 H 0.055 0.945 34 H 0.116 0.884 35 H 0.085 0.915 36 H 0.100 0.900 37 H 0.415 0.585 38 H 0.406 0.594 39 H 0.008 0.992 40 H 0.008 0.992 41 H 0.272 0.728 42 H 0.062 0.938 43 H 0.092 0.908 44 H 0.058 0.942 45 H 0.090 0.910 46 H 0.070 0.930 47 H 0.053 0.947 48 H 0.106 0.894 49 H 0.065 0.935 50 H 0.070 0.930 51 H 0.092 0.908 52 H 0.046 0.954 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.506 13.689 2.890 28.219 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C 0.050 3.950 3 H 0.119 0.881 4 C -0.159 4.159 5 C -0.156 4.156 6 C 0.049 3.951 7 H 0.074 0.926 8 N -0.380 5.380 9 C 0.394 3.606 10 O -0.525 6.525 11 N -0.374 5.374 12 C 0.128 3.872 13 C -0.581 4.581 14 H 0.079 0.921 15 C -0.172 4.172 16 N -0.570 5.570 17 Si 0.759 3.241 18 H -0.190 1.190 19 H -0.198 1.198 20 H -0.186 1.186 21 C -0.017 4.017 22 N -0.331 5.331 23 C 0.401 3.599 24 O -0.463 6.463 25 O -0.296 6.296 26 C 0.087 3.913 27 C -0.229 4.229 28 C -0.197 4.197 29 C -0.233 4.233 30 H 0.069 0.931 31 H 0.090 0.910 32 H 0.075 0.925 33 H 0.074 0.926 34 H 0.135 0.865 35 H 0.104 0.896 36 H 0.118 0.882 37 H 0.252 0.748 38 H 0.242 0.758 39 H 0.026 0.974 40 H 0.025 0.975 41 H 0.081 0.919 42 H 0.081 0.919 43 H 0.110 0.890 44 H 0.077 0.923 45 H 0.109 0.891 46 H 0.089 0.911 47 H 0.072 0.928 48 H 0.124 0.876 49 H 0.084 0.916 50 H 0.089 0.911 51 H 0.111 0.889 52 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -25.334 12.852 2.319 28.502 hybrid contribution 0.812 -0.553 -0.344 1.041 sum -24.522 12.299 1.975 27.504 Atomic orbital electron populations 1.22086 0.92508 1.02618 1.01375 1.21732 0.95862 0.95719 0.81713 0.88102 1.22063 0.94398 1.01400 0.98083 1.21824 0.96616 1.01349 0.95800 1.21051 0.78832 0.99391 0.95836 0.92557 1.44843 1.07204 1.27561 1.58419 1.16261 0.82363 0.82306 0.79674 1.90860 1.62264 1.45954 1.53382 1.45084 1.04214 1.30071 1.57990 1.18918 0.91773 0.85234 0.91299 1.21275 0.89642 1.11668 1.35530 0.92051 1.25547 0.95086 1.00172 0.96438 1.69973 1.04907 1.36777 1.45340 0.85897 0.79083 0.79340 0.79815 1.19013 1.19800 1.18649 1.22053 0.79536 1.01143 0.98969 1.47140 1.06377 1.59779 1.19813 1.18329 0.84320 0.76858 0.80402 1.90932 1.14246 1.60902 1.80199 1.86384 1.42247 1.73948 1.26997 1.22354 0.87471 0.95244 0.86182 1.22410 1.00449 0.96921 1.03079 1.21897 1.01608 1.01073 0.95095 1.22440 0.99941 0.97772 1.03162 0.93139 0.91028 0.92539 0.92631 0.86545 0.89595 0.88183 0.74768 0.75832 0.97387 0.97458 0.91857 0.91892 0.89014 0.92300 0.89083 0.91075 0.92797 0.87556 0.91566 0.91083 0.88927 0.93477 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.24 7.60 71.98 0.55 -1.69 16 2 C 0.15 2.34 3.51 45.12 0.16 2.50 16 3 H 0.10 1.15 8.14 -2.39 -0.02 1.13 16 4 C -0.12 -1.50 5.40 30.82 0.17 -1.34 16 5 C -0.12 -1.54 5.35 30.62 0.16 -1.37 16 6 C 0.16 3.55 2.60 45.07 0.12 3.67 16 7 H 0.06 1.72 7.58 -2.39 -0.02 1.70 16 8 N -0.72 -18.13 5.09 -457.44 -2.33 -20.46 16 9 C 0.69 26.18 8.53 179.05 1.53 27.71 16 10 O -0.64 -30.30 16.01 -3.97 -0.06 -30.37 16 11 N -0.72 -28.63 5.55 -482.32 -2.68 -31.31 16 12 C 0.25 12.48 4.50 85.63 0.38 12.87 16 13 C -0.54 -29.88 9.83 25.60 0.25 -29.62 16 14 H 0.06 3.51 7.84 -2.91 -0.02 3.49 16 15 C 0.03 1.58 5.47 84.66 0.46 2.04 16 16 N -0.93 -55.46 13.96 21.45 0.30 -55.16 16 17 Si 0.93 44.36 27.47 68.60 1.88 46.25 16 18 H -0.27 -12.19 7.11 99.48 0.71 -11.48 16 19 H -0.27 -12.40 7.11 99.48 0.71 -11.69 16 20 H -0.26 -12.45 6.54 99.48 0.65 -11.80 16 21 C 0.11 2.55 6.00 86.36 0.52 3.07 16 22 N -0.59 -13.34 2.97 -924.43 -2.74 -16.08 16 23 C 0.65 17.55 7.64 129.79 0.99 18.54 16 24 O -0.57 -15.68 7.28 19.81 0.14 -15.53 16 25 O -0.38 -10.97 8.55 -55.49 -0.47 -11.45 16 26 C 0.12 2.84 1.13 -10.79 -0.01 2.82 16 27 C -0.17 -3.33 8.37 71.98 0.60 -2.72 16 28 C -0.14 -2.74 8.85 71.98 0.64 -2.11 16 29 C -0.18 -3.91 8.37 71.98 0.60 -3.31 16 30 H 0.05 1.13 6.73 -2.39 -0.02 1.12 16 31 H 0.07 0.86 8.14 -2.39 -0.02 0.84 16 32 H 0.06 1.18 6.76 -2.39 -0.02 1.16 16 33 H 0.05 0.92 8.14 -2.38 -0.02 0.90 16 34 H 0.12 0.77 8.14 -2.39 -0.02 0.75 16 35 H 0.09 1.05 8.14 -2.39 -0.02 1.03 16 36 H 0.10 0.82 8.14 -2.39 -0.02 0.80 16 37 H 0.42 7.28 8.62 -92.71 -0.80 6.48 16 38 H 0.41 13.77 8.34 -92.70 -0.77 12.99 16 39 H 0.01 0.43 7.20 -2.39 -0.02 0.41 16 40 H 0.01 0.39 7.57 -2.39 -0.02 0.37 16 41 H 0.27 15.12 8.31 -92.71 -0.77 14.35 16 42 H 0.06 2.00 6.96 -2.38 -0.02 1.98 16 43 H 0.09 1.76 8.14 -2.38 -0.02 1.74 16 44 H 0.06 1.12 8.14 -2.39 -0.02 1.10 16 45 H 0.09 1.31 8.14 -2.39 -0.02 1.29 16 46 H 0.07 1.63 5.88 -2.39 -0.01 1.61 16 47 H 0.05 1.22 8.14 -2.39 -0.02 1.21 16 48 H 0.11 1.45 8.14 -2.39 -0.02 1.43 16 49 H 0.07 1.29 8.14 -2.38 -0.02 1.27 16 50 H 0.07 1.81 5.88 -2.39 -0.01 1.80 16 51 H 0.09 1.54 8.14 -2.39 -0.02 1.52 16 52 H 0.05 1.15 8.14 -2.39 -0.02 1.14 16 Total: -1.00 -74.88 402.44 0.46 -74.42 By element: Atomic # 1 Polarization: 29.34 SS G_CDS: -0.70 Total: 28.64 kcal Atomic # 6 Polarization: 23.93 SS G_CDS: 7.12 Total: 31.05 kcal Atomic # 7 Polarization: -115.56 SS G_CDS: -7.45 Total: -123.01 kcal Atomic # 8 Polarization: -56.95 SS G_CDS: -0.39 Total: -57.35 kcal Atomic # 14 Polarization: 44.36 SS G_CDS: 1.88 Total: 46.25 kcal Total: -74.88 0.46 -74.42 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000875540532.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -52.237 kcal (2) G-P(sol) polarization free energy of solvation -74.884 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -127.121 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.462 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.422 kcal (6) G-S(sol) free energy of system = (1) + (5) -126.659 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds