Wall clock time and date at job start Wed Apr 1 2020 00:27:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08997 * 109.70048 * 2 1 4 4 C 1.53196 * 109.58339 * 239.64705 * 2 1 3 5 5 C 1.53046 * 109.30905 * 185.57770 * 4 2 1 6 6 C 1.53036 * 109.53602 * 61.36752 * 5 4 2 7 7 H 1.08996 * 109.50492 * 58.61699 * 6 5 4 8 8 N 1.46505 * 109.49698 * 178.68027 * 6 5 4 9 9 C 1.34767 * 120.00175 * 204.93288 * 8 6 5 10 10 O 1.21591 * 120.00210 * 359.97438 * 9 8 6 11 11 N 1.34781 * 120.00273 * 179.97438 * 9 8 6 12 12 C 1.46502 * 120.00205 * 179.97438 * 11 9 8 13 13 C 1.50705 * 109.46809 * 179.97438 * 12 11 9 14 14 H 1.08000 * 120.00023 * 0.02562 * 13 12 11 15 15 C 1.37874 * 119.99599 * 179.72444 * 13 12 11 16 16 N 1.31521 * 120.00109 * 0.27800 * 15 13 12 17 17 Si 1.86797 * 119.99851 * 180.27797 * 15 13 12 18 18 H 1.48504 * 109.47146 * 90.00063 * 17 15 13 19 19 H 1.48504 * 109.47123 * 209.99903 * 17 15 13 20 20 H 1.48493 * 109.47308 * 330.00292 * 17 15 13 21 21 C 1.53197 * 109.34045 * 298.64600 * 6 5 4 22 22 N 1.46926 * 109.58528 * 120.35728 * 2 1 3 23 23 C 1.34774 * 120.63265 * 353.39603 * 22 2 1 24 24 O 1.21508 * 119.99967 * 5.08775 * 23 22 2 25 25 O 1.34633 * 120.00007 * 185.09312 * 23 22 2 26 26 C 1.45204 * 117.00042 * 180.02562 * 25 23 22 27 27 C 1.52997 * 109.47268 * 59.99526 * 26 25 23 28 28 C 1.53001 * 109.46923 * 179.97438 * 26 25 23 29 29 C 1.53005 * 109.46635 * 299.99404 * 26 25 23 30 30 H 1.09000 * 109.47576 * 183.90143 * 1 2 3 31 31 H 1.09008 * 109.46954 * 303.90006 * 1 2 3 32 32 H 1.08997 * 109.47208 * 63.89847 * 1 2 3 33 33 H 1.08998 * 109.49943 * 65.62976 * 4 2 1 34 34 H 1.09004 * 109.49765 * 305.53026 * 4 2 1 35 35 H 1.08995 * 109.46087 * 301.34373 * 5 4 2 36 36 H 1.09004 * 109.45493 * 181.38095 * 5 4 2 37 37 H 0.96999 * 119.99830 * 24.93106 * 8 6 5 38 38 H 0.96999 * 119.99732 * 359.97438 * 11 9 8 39 39 H 1.08996 * 109.46787 * 60.00540 * 12 11 9 40 40 H 1.09001 * 109.47103 * 300.00231 * 12 11 9 41 41 H 0.96996 * 119.99841 * 179.97438 * 16 15 13 42 42 H 1.08994 * 109.58630 * 174.41103 * 21 6 5 43 43 H 1.08995 * 109.58327 * 294.83750 * 21 6 5 44 44 H 1.08998 * 109.47260 * 60.00394 * 27 26 25 45 45 H 1.08996 * 109.47102 * 180.02562 * 27 26 25 46 46 H 1.09001 * 109.47151 * 300.00149 * 27 26 25 47 47 H 1.08996 * 109.46963 * 60.00084 * 28 26 25 48 48 H 1.08999 * 109.46887 * 179.97438 * 28 26 25 49 49 H 1.08998 * 109.47430 * 299.99498 * 28 26 25 50 50 H 1.09001 * 109.47129 * 60.00252 * 29 26 25 51 51 H 1.09005 * 109.46723 * 180.02562 * 29 26 25 52 52 H 1.09001 * 109.47211 * 300.00003 * 29 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8974 1.0262 0.0000 4 6 2.0435 -0.7294 -1.2455 5 6 3.5675 -0.8480 -1.1702 6 6 3.9568 -1.6658 0.0633 7 1 3.4987 -2.6531 0.0049 8 7 5.4142 -1.8055 0.1173 9 6 5.9676 -2.8475 0.7685 10 8 5.2574 -3.6716 1.3116 11 7 7.3083 -2.9764 0.8178 12 6 7.9099 -4.1089 1.5262 13 6 9.4114 -4.0201 1.4318 14 1 9.8714 -3.2017 0.8979 15 6 10.1977 -4.9803 2.0323 16 7 9.6375 -5.9767 2.6827 17 14 12.0590 -4.8661 1.9219 18 1 12.5756 -4.0798 3.0709 19 1 12.6415 -6.2317 1.9547 20 1 12.4394 -4.1959 0.6526 21 6 3.4650 -0.9478 1.3240 22 7 2.0225 -0.6996 1.1945 23 6 1.1674 -1.1066 2.1533 24 8 -0.0303 -0.9794 1.9931 25 8 1.6403 -1.6542 3.2888 26 6 0.6616 -2.0702 4.2774 27 6 -0.2637 -3.1246 3.6668 28 6 1.3819 -2.6647 5.4893 29 6 -0.1647 -0.8600 4.7177 30 1 -0.3634 -1.0253 0.0699 31 1 -0.3633 0.5732 0.8530 32 1 -0.3633 0.4521 -0.9228 33 1 1.7660 -0.1668 -2.1369 34 1 1.6028 -1.7253 -1.2914 35 1 4.0061 0.1473 -1.0994 36 1 3.9377 -1.3449 -2.0670 37 1 5.9808 -1.1479 -0.3156 38 1 7.8749 -2.3192 0.3842 39 1 7.5723 -5.0412 1.0736 40 1 7.6091 -4.0835 2.5735 41 1 10.1907 -6.6523 3.1048 42 1 3.6517 -1.5731 2.1970 43 1 3.9902 0.0011 1.4325 44 1 0.3249 -3.9868 3.3532 45 1 -0.9987 -3.4366 4.4088 46 1 -0.7769 -2.7014 2.8032 47 1 2.0413 -1.9138 5.9244 48 1 0.6472 -2.9766 6.2316 49 1 1.9702 -3.5269 5.1754 50 1 -0.6778 -0.4368 3.8541 51 1 -0.8991 -1.1722 5.4602 52 1 0.4946 -0.1088 5.1527 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000875540533.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:27:12 Heat of formation + Delta-G solvation = -106.674003 kcal Electronic energy + Delta-G solvation = -31582.806048 eV Core-core repulsion = 27389.792147 eV Total energy + Delta-G solvation = -4193.013901 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 341.215 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -41.17024 -39.63055 -38.58374 -36.73389 -34.57795 -34.38149 -33.97127 -32.58764 -32.35894 -30.89475 -27.61585 -27.47338 -27.43312 -26.62489 -24.83722 -23.31061 -22.62272 -21.44618 -20.70471 -20.11372 -19.35346 -18.05420 -17.59554 -16.80045 -16.34058 -16.03765 -15.76118 -15.63159 -14.92302 -14.76458 -14.63506 -14.57576 -14.17920 -13.98770 -13.72122 -13.61684 -13.49413 -13.09919 -12.77774 -12.69504 -12.40064 -12.31420 -12.25943 -12.00414 -11.95965 -11.85755 -11.81264 -11.60187 -11.31614 -11.29950 -11.23885 -11.03694 -10.95802 -10.88675 -10.74755 -10.35215 -10.29905 -9.44931 -9.37119 -9.35641 -9.09871 -8.72918 -8.55929 -7.77092 -6.15022 -4.21587 2.06183 2.78597 3.23136 3.24748 3.31513 3.34346 3.78275 3.92544 4.32919 4.52463 4.56997 4.61780 4.65488 4.70586 4.83656 4.87236 5.04053 5.09035 5.18933 5.21121 5.25109 5.37834 5.39769 5.45418 5.48086 5.56923 5.58168 5.62676 5.70965 5.73382 5.77093 5.79615 5.87825 5.95473 6.01424 6.12992 6.16933 6.19622 6.25791 6.40805 6.53084 6.82104 7.11156 7.32796 7.51167 7.55028 7.57735 7.90446 8.04248 8.32418 8.76602 8.93686 9.32785 9.48056 10.95199 Molecular weight = 341.21amu Principal moments of inertia in cm(-1) A = 0.012982 B = 0.002667 C = 0.002292 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2156.265764 B =10497.722830 C =12215.636354 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C 0.156 3.844 3 H 0.076 0.924 4 C -0.128 4.128 5 C -0.128 4.128 6 C 0.155 3.845 7 H 0.091 0.909 8 N -0.751 5.751 9 C 0.692 3.308 10 O -0.597 6.597 11 N -0.728 5.728 12 C 0.267 3.733 13 C -0.542 4.542 14 H 0.062 0.938 15 C 0.063 3.937 16 N -0.885 5.885 17 Si 0.904 3.096 18 H -0.279 1.279 19 H -0.285 1.285 20 H -0.273 1.273 21 C 0.101 3.899 22 N -0.591 5.591 23 C 0.657 3.343 24 O -0.566 6.566 25 O -0.359 6.359 26 C 0.137 3.863 27 C -0.182 4.182 28 C -0.143 4.143 29 C -0.181 4.181 30 H 0.075 0.925 31 H 0.073 0.927 32 H 0.044 0.956 33 H 0.082 0.918 34 H 0.073 0.927 35 H 0.070 0.930 36 H 0.076 0.924 37 H 0.393 0.607 38 H 0.386 0.614 39 H 0.024 0.976 40 H 0.025 0.975 41 H 0.266 0.734 42 H 0.101 0.899 43 H 0.069 0.931 44 H 0.061 0.939 45 H 0.067 0.933 46 H 0.086 0.914 47 H 0.066 0.934 48 H 0.078 0.922 49 H 0.071 0.929 50 H 0.086 0.914 51 H 0.067 0.933 52 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.799 14.494 -3.614 24.012 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C 0.055 3.945 3 H 0.093 0.907 4 C -0.167 4.167 5 C -0.167 4.167 6 C 0.048 3.952 7 H 0.109 0.891 8 N -0.408 5.408 9 C 0.392 3.608 10 O -0.475 6.475 11 N -0.380 5.380 12 C 0.146 3.854 13 C -0.580 4.580 14 H 0.080 0.920 15 C -0.140 4.140 16 N -0.523 5.523 17 Si 0.731 3.269 18 H -0.205 1.205 19 H -0.210 1.210 20 H -0.198 1.198 21 C -0.023 4.023 22 N -0.331 5.331 23 C 0.413 3.587 24 O -0.457 6.457 25 O -0.273 6.273 26 C 0.100 3.900 27 C -0.240 4.240 28 C -0.200 4.200 29 C -0.238 4.238 30 H 0.094 0.906 31 H 0.091 0.909 32 H 0.063 0.937 33 H 0.101 0.899 34 H 0.091 0.909 35 H 0.089 0.911 36 H 0.094 0.906 37 H 0.226 0.774 38 H 0.218 0.782 39 H 0.042 0.958 40 H 0.043 0.957 41 H 0.075 0.925 42 H 0.119 0.881 43 H 0.087 0.913 44 H 0.081 0.919 45 H 0.086 0.914 46 H 0.105 0.895 47 H 0.085 0.915 48 H 0.097 0.903 49 H 0.090 0.910 50 H 0.105 0.895 51 H 0.086 0.914 52 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -19.757 13.494 -2.931 24.105 hybrid contribution 1.718 0.555 -0.330 1.836 sum -18.039 14.049 -3.261 23.096 Atomic orbital electron populations 1.22249 0.92132 1.04330 1.00764 1.21314 0.96133 0.94616 0.82460 0.90653 1.22000 0.95159 1.02011 0.97487 1.21839 0.96127 1.00594 0.98094 1.20926 0.80628 1.00168 0.93527 0.89124 1.45136 1.06149 1.28824 1.60697 1.16186 0.83324 0.81569 0.79769 1.90893 1.61287 1.43922 1.51412 1.45725 1.03346 1.30763 1.58203 1.18977 0.91771 0.82786 0.91842 1.21224 0.90603 1.10596 1.35587 0.91972 1.24944 0.99286 0.94963 0.94838 1.69981 1.35772 1.12499 1.34008 0.86420 0.84555 0.77456 0.78480 1.20494 1.21026 1.19797 1.22231 0.78700 1.00824 1.00574 1.46969 1.06952 1.59858 1.19367 1.18059 0.83992 0.76565 0.80135 1.90924 1.14105 1.60687 1.80000 1.86390 1.40907 1.73518 1.26491 1.22043 0.87320 0.94471 0.86179 1.22502 0.99821 0.98614 1.03028 1.21872 1.01130 1.01906 0.95129 1.22504 1.00414 0.97645 1.03220 0.90630 0.90857 0.93707 0.89903 0.90865 0.91142 0.90574 0.77405 0.78173 0.95773 0.95723 0.92470 0.88089 0.91305 0.91950 0.91384 0.89514 0.91515 0.90324 0.91026 0.89482 0.91358 0.92368 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.34 7.59 37.16 0.28 -1.06 16 2 C 0.16 1.46 3.49 -67.60 -0.24 1.23 16 3 H 0.08 0.61 8.14 -51.93 -0.42 0.18 16 4 C -0.13 -1.04 5.37 -26.61 -0.14 -1.18 16 5 C -0.13 -1.11 5.35 -26.69 -0.14 -1.26 16 6 C 0.15 1.95 2.60 -67.81 -0.18 1.78 16 7 H 0.09 1.43 7.58 -51.93 -0.39 1.03 16 8 N -0.75 -10.49 5.08 -58.56 -0.30 -10.78 16 9 C 0.69 13.83 8.53 -86.92 -0.74 13.08 16 10 O -0.60 -14.62 16.01 5.29 0.08 -14.53 16 11 N -0.73 -15.23 5.55 -66.41 -0.37 -15.60 16 12 C 0.27 7.10 5.43 -5.19 -0.03 7.07 16 13 C -0.54 -14.63 9.28 -34.44 -0.32 -14.95 16 14 H 0.06 1.57 7.60 -52.49 -0.40 1.17 16 15 C 0.06 1.75 5.46 -17.82 -0.10 1.65 16 16 N -0.89 -26.08 13.29 55.43 0.74 -25.34 16 17 Si 0.90 20.78 29.54 -169.99 -5.02 15.75 16 18 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 19 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 20 H -0.27 -6.09 7.11 56.52 0.40 -5.69 16 21 C 0.10 1.29 6.01 -3.70 -0.02 1.27 16 22 N -0.59 -7.13 2.97 -170.96 -0.51 -7.64 16 23 C 0.66 9.06 7.64 54.05 0.41 9.47 16 24 O -0.57 -7.82 7.28 -19.28 -0.14 -7.96 16 25 O -0.36 -5.17 8.55 -40.30 -0.34 -5.52 16 26 C 0.14 1.62 1.13 -90.62 -0.10 1.52 16 27 C -0.18 -2.09 8.37 37.16 0.31 -1.78 16 28 C -0.14 -1.51 8.85 37.16 0.33 -1.18 16 29 C -0.18 -1.88 8.37 37.16 0.31 -1.57 16 30 H 0.07 0.88 6.74 -51.93 -0.35 0.53 16 31 H 0.07 0.81 6.76 -51.92 -0.35 0.46 16 32 H 0.04 0.34 8.14 -51.93 -0.42 -0.08 16 33 H 0.08 0.50 8.14 -51.93 -0.42 0.08 16 34 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 35 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 36 H 0.08 0.64 8.14 -51.93 -0.42 0.22 16 37 H 0.39 4.21 8.62 -40.82 -0.35 3.86 16 38 H 0.39 6.83 8.34 -40.82 -0.34 6.49 16 39 H 0.02 0.71 8.14 -51.93 -0.42 0.29 16 40 H 0.02 0.73 8.14 -51.93 -0.42 0.30 16 41 H 0.27 7.33 8.31 -40.82 -0.34 6.99 16 42 H 0.10 1.62 6.96 -51.93 -0.36 1.26 16 43 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 44 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 45 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 46 H 0.09 1.11 5.88 -51.93 -0.31 0.80 16 47 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 48 H 0.08 0.64 8.14 -51.93 -0.42 0.22 16 49 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 50 H 0.09 1.03 5.88 -51.93 -0.31 0.72 16 51 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 52 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 LS Contribution 406.00 15.07 6.12 6.12 Total: -1.00 -33.19 406.00 -9.16 -42.35 By element: Atomic # 1 Polarization: 18.11 SS G_CDS: -9.06 Total: 9.05 kcal Atomic # 6 Polarization: 14.47 SS G_CDS: -0.36 Total: 14.10 kcal Atomic # 7 Polarization: -58.92 SS G_CDS: -0.44 Total: -59.36 kcal Atomic # 8 Polarization: -27.61 SS G_CDS: -0.40 Total: -28.02 kcal Atomic # 14 Polarization: 20.78 SS G_CDS: -5.02 Total: 15.75 kcal Total LS contribution 6.12 Total: 6.12 kcal Total: -33.19 -9.16 -42.35 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000875540533.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -64.326 kcal (2) G-P(sol) polarization free energy of solvation -33.188 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.513 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.161 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.348 kcal (6) G-S(sol) free energy of system = (1) + (5) -106.674 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds