Wall clock time and date at job start Wed Apr 1 2020 00:27:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08997 * 109.70048 * 2 1 4 4 C 1.53196 * 109.58339 * 239.64705 * 2 1 3 5 5 C 1.53046 * 109.30905 * 185.57770 * 4 2 1 6 6 C 1.53036 * 109.53602 * 61.36752 * 5 4 2 7 7 H 1.08996 * 109.50492 * 58.61699 * 6 5 4 8 8 N 1.46505 * 109.49698 * 178.68027 * 6 5 4 9 9 C 1.34767 * 120.00175 * 204.93288 * 8 6 5 10 10 O 1.21591 * 120.00210 * 359.97438 * 9 8 6 11 11 N 1.34781 * 120.00273 * 179.97438 * 9 8 6 12 12 C 1.46502 * 120.00205 * 179.97438 * 11 9 8 13 13 C 1.50705 * 109.46809 * 179.97438 * 12 11 9 14 14 H 1.08000 * 120.00023 * 0.02562 * 13 12 11 15 15 C 1.37874 * 119.99599 * 179.72444 * 13 12 11 16 16 N 1.31521 * 120.00109 * 0.27800 * 15 13 12 17 17 Si 1.86797 * 119.99851 * 180.27797 * 15 13 12 18 18 H 1.48504 * 109.47146 * 90.00063 * 17 15 13 19 19 H 1.48504 * 109.47123 * 209.99903 * 17 15 13 20 20 H 1.48493 * 109.47308 * 330.00292 * 17 15 13 21 21 C 1.53197 * 109.34045 * 298.64600 * 6 5 4 22 22 N 1.46926 * 109.58528 * 120.35728 * 2 1 3 23 23 C 1.34774 * 120.63265 * 353.39603 * 22 2 1 24 24 O 1.21508 * 119.99967 * 5.08775 * 23 22 2 25 25 O 1.34633 * 120.00007 * 185.09312 * 23 22 2 26 26 C 1.45204 * 117.00042 * 180.02562 * 25 23 22 27 27 C 1.52997 * 109.47268 * 59.99526 * 26 25 23 28 28 C 1.53001 * 109.46923 * 179.97438 * 26 25 23 29 29 C 1.53005 * 109.46635 * 299.99404 * 26 25 23 30 30 H 1.09000 * 109.47576 * 183.90143 * 1 2 3 31 31 H 1.09008 * 109.46954 * 303.90006 * 1 2 3 32 32 H 1.08997 * 109.47208 * 63.89847 * 1 2 3 33 33 H 1.08998 * 109.49943 * 65.62976 * 4 2 1 34 34 H 1.09004 * 109.49765 * 305.53026 * 4 2 1 35 35 H 1.08995 * 109.46087 * 301.34373 * 5 4 2 36 36 H 1.09004 * 109.45493 * 181.38095 * 5 4 2 37 37 H 0.96999 * 119.99830 * 24.93106 * 8 6 5 38 38 H 0.96999 * 119.99732 * 359.97438 * 11 9 8 39 39 H 1.08996 * 109.46787 * 60.00540 * 12 11 9 40 40 H 1.09001 * 109.47103 * 300.00231 * 12 11 9 41 41 H 0.96996 * 119.99841 * 179.97438 * 16 15 13 42 42 H 1.08994 * 109.58630 * 174.41103 * 21 6 5 43 43 H 1.08995 * 109.58327 * 294.83750 * 21 6 5 44 44 H 1.08998 * 109.47260 * 60.00394 * 27 26 25 45 45 H 1.08996 * 109.47102 * 180.02562 * 27 26 25 46 46 H 1.09001 * 109.47151 * 300.00149 * 27 26 25 47 47 H 1.08996 * 109.46963 * 60.00084 * 28 26 25 48 48 H 1.08999 * 109.46887 * 179.97438 * 28 26 25 49 49 H 1.08998 * 109.47430 * 299.99498 * 28 26 25 50 50 H 1.09001 * 109.47129 * 60.00252 * 29 26 25 51 51 H 1.09005 * 109.46723 * 180.02562 * 29 26 25 52 52 H 1.09001 * 109.47211 * 300.00003 * 29 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8974 1.0262 0.0000 4 6 2.0435 -0.7294 -1.2455 5 6 3.5675 -0.8480 -1.1702 6 6 3.9568 -1.6658 0.0633 7 1 3.4987 -2.6531 0.0049 8 7 5.4142 -1.8055 0.1173 9 6 5.9676 -2.8475 0.7685 10 8 5.2574 -3.6716 1.3116 11 7 7.3083 -2.9764 0.8178 12 6 7.9099 -4.1089 1.5262 13 6 9.4114 -4.0201 1.4318 14 1 9.8714 -3.2017 0.8979 15 6 10.1977 -4.9803 2.0323 16 7 9.6375 -5.9767 2.6827 17 14 12.0590 -4.8661 1.9219 18 1 12.5756 -4.0798 3.0709 19 1 12.6415 -6.2317 1.9547 20 1 12.4394 -4.1959 0.6526 21 6 3.4650 -0.9478 1.3240 22 7 2.0225 -0.6996 1.1945 23 6 1.1674 -1.1066 2.1533 24 8 -0.0303 -0.9794 1.9931 25 8 1.6403 -1.6542 3.2888 26 6 0.6616 -2.0702 4.2774 27 6 -0.2637 -3.1246 3.6668 28 6 1.3819 -2.6647 5.4893 29 6 -0.1647 -0.8600 4.7177 30 1 -0.3634 -1.0253 0.0699 31 1 -0.3633 0.5732 0.8530 32 1 -0.3633 0.4521 -0.9228 33 1 1.7660 -0.1668 -2.1369 34 1 1.6028 -1.7253 -1.2914 35 1 4.0061 0.1473 -1.0994 36 1 3.9377 -1.3449 -2.0670 37 1 5.9808 -1.1479 -0.3156 38 1 7.8749 -2.3192 0.3842 39 1 7.5723 -5.0412 1.0736 40 1 7.6091 -4.0835 2.5735 41 1 10.1907 -6.6523 3.1048 42 1 3.6517 -1.5731 2.1970 43 1 3.9902 0.0011 1.4325 44 1 0.3249 -3.9868 3.3532 45 1 -0.9987 -3.4366 4.4088 46 1 -0.7769 -2.7014 2.8032 47 1 2.0413 -1.9138 5.9244 48 1 0.6472 -2.9766 6.2316 49 1 1.9702 -3.5269 5.1754 50 1 -0.6778 -0.4368 3.8541 51 1 -0.8991 -1.1722 5.4602 52 1 0.4946 -0.1088 5.1527 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000875540533.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:27:11 Heat of formation + Delta-G solvation = -130.372284 kcal Electronic energy + Delta-G solvation = -31583.833683 eV Core-core repulsion = 27389.792147 eV Total energy + Delta-G solvation = -4194.041536 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 341.215 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -42.17017 -41.03521 -39.73724 -37.82450 -36.18180 -35.58609 -35.30661 -34.33726 -33.46953 -32.06048 -29.24634 -28.37267 -28.33112 -27.95767 -25.84602 -24.68071 -24.05872 -22.54924 -21.82356 -21.52126 -20.36675 -19.70517 -18.61356 -18.07872 -17.74705 -17.34643 -17.16649 -16.69317 -16.49157 -16.20039 -15.75642 -15.54990 -15.39573 -15.21309 -15.02031 -14.69074 -14.52238 -14.38434 -14.04709 -13.99724 -13.66333 -13.57162 -13.21444 -13.21016 -13.12161 -12.88398 -12.84532 -12.75201 -12.70513 -12.54934 -12.28219 -12.20669 -12.13387 -12.03473 -11.87775 -11.67818 -11.45544 -11.33711 -11.20654 -10.78813 -10.46802 -10.28583 -9.79668 -9.47477 -8.26826 -6.43175 1.12483 1.44496 1.47243 1.58136 1.72485 1.88308 2.25677 2.40446 2.79763 3.08296 3.54475 3.65506 3.72702 3.77524 3.79986 3.84417 3.93247 3.99082 4.16956 4.35404 4.38589 4.51082 4.59545 4.62541 4.66269 4.70178 4.73527 4.78038 4.83250 4.84690 4.89719 4.98854 5.06383 5.07752 5.12565 5.17441 5.25512 5.28743 5.29144 5.33205 5.36038 5.45205 5.51083 5.58017 5.67380 5.71851 5.87100 6.28934 6.31334 6.69058 7.26379 7.29956 7.35143 7.75527 8.85559 Molecular weight = 341.21amu Principal moments of inertia in cm(-1) A = 0.012982 B = 0.002667 C = 0.002292 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2156.265764 B =10497.722830 C =12215.636354 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C 0.150 3.850 3 H 0.103 0.897 4 C -0.122 4.122 5 C -0.117 4.117 6 C 0.155 3.845 7 H 0.052 0.948 8 N -0.722 5.722 9 C 0.691 3.309 10 O -0.647 6.647 11 N -0.721 5.721 12 C 0.287 3.713 13 C -0.553 4.553 14 H 0.085 0.915 15 C 0.003 3.997 16 N -0.932 5.932 17 Si 0.986 3.014 18 H -0.271 1.271 19 H -0.285 1.285 20 H -0.254 1.254 21 C 0.108 3.892 22 N -0.590 5.590 23 C 0.645 3.355 24 O -0.571 6.571 25 O -0.382 6.382 26 C 0.123 3.877 27 C -0.176 4.176 28 C -0.140 4.140 29 C -0.170 4.170 30 H 0.048 0.952 31 H 0.056 0.944 32 H 0.072 0.928 33 H 0.119 0.881 34 H 0.053 0.947 35 H 0.102 0.898 36 H 0.086 0.914 37 H 0.415 0.585 38 H 0.406 0.594 39 H -0.017 1.017 40 H -0.016 1.016 41 H 0.268 0.732 42 H 0.059 0.941 43 H 0.093 0.907 44 H 0.044 0.956 45 H 0.093 0.907 46 H 0.071 0.929 47 H 0.065 0.935 48 H 0.107 0.893 49 H 0.050 0.950 50 H 0.071 0.929 51 H 0.091 0.909 52 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.951 17.489 -5.315 25.619 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C 0.050 3.950 3 H 0.120 0.880 4 C -0.160 4.160 5 C -0.154 4.154 6 C 0.048 3.952 7 H 0.070 0.930 8 N -0.380 5.380 9 C 0.390 3.610 10 O -0.530 6.530 11 N -0.375 5.375 12 C 0.163 3.837 13 C -0.591 4.591 14 H 0.103 0.897 15 C -0.197 4.197 16 N -0.570 5.570 17 Si 0.809 3.191 18 H -0.196 1.196 19 H -0.211 1.211 20 H -0.178 1.178 21 C -0.016 4.016 22 N -0.331 5.331 23 C 0.401 3.599 24 O -0.463 6.463 25 O -0.297 6.297 26 C 0.087 3.913 27 C -0.233 4.233 28 C -0.197 4.197 29 C -0.227 4.227 30 H 0.067 0.933 31 H 0.075 0.925 32 H 0.091 0.909 33 H 0.137 0.863 34 H 0.072 0.928 35 H 0.120 0.880 36 H 0.104 0.896 37 H 0.253 0.747 38 H 0.241 0.759 39 H 0.001 0.999 40 H 0.002 0.998 41 H 0.077 0.923 42 H 0.078 0.922 43 H 0.112 0.888 44 H 0.063 0.937 45 H 0.112 0.888 46 H 0.090 0.910 47 H 0.084 0.916 48 H 0.126 0.874 49 H 0.070 0.930 50 H 0.090 0.910 51 H 0.110 0.890 52 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -18.924 16.582 -4.700 25.596 hybrid contribution 1.324 -0.384 0.206 1.394 sum -17.600 16.197 -4.494 24.338 Atomic orbital electron populations 1.22091 0.92484 1.02579 1.01433 1.21653 0.95899 0.95778 0.81692 0.87970 1.22004 0.94434 1.01430 0.98151 1.21817 0.96628 1.01305 0.95698 1.21048 0.78992 0.99228 0.95922 0.92991 1.44820 1.07147 1.27199 1.58801 1.16361 0.82659 0.82287 0.79666 1.90868 1.62311 1.46260 1.53514 1.45273 1.04077 1.29962 1.58190 1.18380 0.92514 0.83115 0.89683 1.21607 0.90496 1.11299 1.35672 0.89676 1.26071 1.05238 0.94291 0.94071 1.70152 1.38135 1.13609 1.35145 0.85147 0.77157 0.77493 0.79341 1.19639 1.21095 1.17800 1.22042 0.79626 1.01078 0.98889 1.47151 1.06379 1.59704 1.19878 1.18331 0.84333 0.76850 0.80403 1.90926 1.14202 1.60959 1.80165 1.86391 1.42334 1.73737 1.27267 1.22363 0.87453 0.95320 0.86157 1.22440 0.99912 0.97777 1.03182 1.21899 1.01623 1.00971 0.95223 1.22406 1.00440 0.96821 1.03077 0.93255 0.92494 0.90918 0.86326 0.92798 0.87979 0.89581 0.74728 0.75868 0.99871 0.99822 0.92302 0.92234 0.88841 0.93661 0.88824 0.91019 0.91560 0.87434 0.93042 0.91010 0.89006 0.92270 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.35 7.59 71.98 0.55 -1.80 16 2 C 0.15 2.49 3.49 44.98 0.16 2.64 16 3 H 0.10 1.23 8.14 -2.39 -0.02 1.21 16 4 C -0.12 -1.63 5.37 30.68 0.16 -1.47 16 5 C -0.12 -1.64 5.35 30.62 0.16 -1.48 16 6 C 0.15 3.83 2.60 45.07 0.12 3.95 16 7 H 0.05 1.72 7.58 -2.39 -0.02 1.70 16 8 N -0.72 -19.49 5.08 -457.44 -2.33 -21.81 16 9 C 0.69 28.35 8.53 179.06 1.53 29.88 16 10 O -0.65 -33.80 16.01 -4.00 -0.06 -33.87 16 11 N -0.72 -30.59 5.55 -482.29 -2.68 -33.27 16 12 C 0.29 15.92 5.43 85.63 0.46 16.38 16 13 C -0.55 -30.00 9.28 25.60 0.24 -29.76 16 14 H 0.09 4.13 7.60 -2.91 -0.02 4.11 16 15 C 0.00 0.15 5.46 84.65 0.46 0.61 16 16 N -0.93 -56.54 13.29 21.45 0.28 -56.26 16 17 Si 0.99 42.16 29.54 68.60 2.03 44.18 16 18 H -0.27 -11.20 7.11 99.48 0.71 -10.49 16 19 H -0.29 -12.15 7.11 99.48 0.71 -11.44 16 20 H -0.25 -10.05 7.11 99.48 0.71 -9.34 16 21 C 0.11 2.76 6.01 86.36 0.52 3.28 16 22 N -0.59 -14.22 2.97 -925.23 -2.75 -16.97 16 23 C 0.65 18.59 7.64 129.79 0.99 19.58 16 24 O -0.57 -16.42 7.28 19.82 0.14 -16.27 16 25 O -0.38 -11.79 8.55 -55.42 -0.47 -12.27 16 26 C 0.12 3.04 1.13 -10.79 -0.01 3.03 16 27 C -0.18 -4.22 8.37 71.98 0.60 -3.62 16 28 C -0.14 -3.04 8.85 71.98 0.64 -2.40 16 29 C -0.17 -3.51 8.37 71.98 0.60 -2.90 16 30 H 0.05 1.16 6.74 -2.39 -0.02 1.14 16 31 H 0.06 1.23 6.76 -2.38 -0.02 1.21 16 32 H 0.07 0.92 8.14 -2.39 -0.02 0.90 16 33 H 0.12 0.85 8.14 -2.39 -0.02 0.83 16 34 H 0.05 0.96 8.14 -2.39 -0.02 0.94 16 35 H 0.10 0.89 8.14 -2.39 -0.02 0.87 16 36 H 0.09 1.13 8.14 -2.38 -0.02 1.11 16 37 H 0.42 7.69 8.62 -92.71 -0.80 6.89 16 38 H 0.41 13.83 8.34 -92.71 -0.77 13.06 16 39 H -0.02 -1.05 8.14 -2.39 -0.02 -1.07 16 40 H -0.02 -1.02 8.14 -2.39 -0.02 -1.04 16 41 H 0.27 15.19 8.31 -92.71 -0.77 14.41 16 42 H 0.06 2.05 6.96 -2.39 -0.02 2.03 16 43 H 0.09 1.92 8.14 -2.39 -0.02 1.90 16 44 H 0.04 1.21 8.14 -2.39 -0.02 1.19 16 45 H 0.09 1.70 8.14 -2.39 -0.02 1.68 16 46 H 0.07 1.93 5.88 -2.39 -0.01 1.92 16 47 H 0.07 1.42 8.14 -2.39 -0.02 1.40 16 48 H 0.11 1.65 8.14 -2.39 -0.02 1.63 16 49 H 0.05 1.31 8.14 -2.39 -0.02 1.29 16 50 H 0.07 1.72 5.88 -2.39 -0.01 1.70 16 51 H 0.09 1.42 8.14 -2.38 -0.02 1.40 16 52 H 0.06 1.19 8.14 -2.39 -0.02 1.17 16 Total: -1.00 -78.97 406.00 0.70 -78.28 By element: Atomic # 1 Polarization: 32.97 SS G_CDS: -0.65 Total: 32.32 kcal Atomic # 6 Polarization: 28.75 SS G_CDS: 7.18 Total: 35.93 kcal Atomic # 7 Polarization: -120.84 SS G_CDS: -7.47 Total: -128.31 kcal Atomic # 8 Polarization: -62.01 SS G_CDS: -0.39 Total: -62.41 kcal Atomic # 14 Polarization: 42.16 SS G_CDS: 2.03 Total: 44.18 kcal Total: -78.97 0.70 -78.28 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000875540533.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -52.096 kcal (2) G-P(sol) polarization free energy of solvation -78.973 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -131.069 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.697 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.276 kcal (6) G-S(sol) free energy of system = (1) + (5) -130.372 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds