Wall clock time and date at job start Wed Apr 1 2020 01:25:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09001 * 110.34996 * 2 1 4 4 C 1.53993 * 110.30690 * 237.86247 * 2 1 3 5 5 N 1.47908 * 107.22336 * 242.20571 * 4 2 1 6 6 C 1.46897 * 111.00072 * 214.25473 * 5 4 2 7 7 C 1.50703 * 109.47306 * 176.61381 * 6 5 4 8 8 O 1.21296 * 119.99416 * 6.14417 * 7 6 5 9 9 N 1.34774 * 120.00292 * 186.13956 * 7 6 5 10 10 C 1.37094 * 119.99583 * 180.02562 * 9 7 6 11 11 H 1.07999 * 120.00525 * 0.02562 * 10 9 7 12 12 C 1.38960 * 119.99524 * 180.02562 * 10 9 7 13 13 N 1.31412 * 119.99916 * 0.02562 * 12 10 9 14 14 Si 1.86794 * 119.99922 * 180.02562 * 12 10 9 15 15 H 1.48503 * 109.47258 * 59.99878 * 14 12 10 16 16 H 1.48500 * 109.47258 * 180.02562 * 14 12 10 17 17 H 1.48504 * 109.47123 * 300.00291 * 14 12 10 18 18 C 1.48811 * 105.67826 * 334.90819 * 5 4 2 19 19 C 1.54595 * 110.30780 * 122.14195 * 2 1 3 20 20 H 1.08996 * 110.72097 * 22.52215 * 19 2 1 21 21 C 1.52996 * 110.72379 * 259.40925 * 19 2 1 22 22 N 1.46505 * 109.46847 * 175.00040 * 21 19 2 23 23 C 1.34775 * 120.00226 * 180.02562 * 22 21 19 24 24 O 1.21515 * 119.99356 * 0.02562 * 23 22 21 25 25 O 1.34624 * 120.00410 * 179.97438 * 23 22 21 26 26 C 1.45200 * 117.00391 * 179.97438 * 25 23 22 27 27 C 1.53001 * 109.46737 * 60.00672 * 26 25 23 28 28 C 1.52998 * 109.47528 * 180.02562 * 26 25 23 29 29 C 1.52998 * 109.47231 * 300.00786 * 26 25 23 30 30 H 1.09002 * 109.46796 * 180.68087 * 1 2 3 31 31 H 1.08998 * 109.46925 * 300.68878 * 1 2 3 32 32 H 1.08998 * 109.46913 * 60.68855 * 1 2 3 33 33 H 1.08994 * 109.92289 * 1.65757 * 4 2 1 34 34 H 1.09009 * 109.91688 * 122.76301 * 4 2 1 35 35 H 1.08996 * 109.47542 * 296.62245 * 6 5 4 36 36 H 1.09010 * 109.46875 * 56.61739 * 6 5 4 37 37 H 0.97003 * 119.99922 * 0.02562 * 9 7 6 38 38 H 0.96997 * 119.99530 * 180.02562 * 13 12 10 39 39 H 1.08994 * 110.51834 * 280.53989 * 18 5 4 40 40 H 1.09006 * 110.69606 * 157.49055 * 18 5 4 41 41 H 1.08998 * 109.47207 * 295.00116 * 21 19 2 42 42 H 1.09002 * 109.46866 * 55.00665 * 21 19 2 43 43 H 0.96998 * 119.99776 * 0.02562 * 22 21 19 44 44 H 1.08997 * 109.47746 * 59.99337 * 27 26 25 45 45 H 1.09000 * 109.47282 * 180.02562 * 27 26 25 46 46 H 1.09006 * 109.47218 * 299.99966 * 27 26 25 47 47 H 1.08994 * 109.47076 * 59.99981 * 28 26 25 48 48 H 1.09001 * 109.47284 * 180.02562 * 28 26 25 49 49 H 1.09000 * 109.47359 * 300.00626 * 28 26 25 50 50 H 1.08990 * 109.47291 * 59.99533 * 29 26 25 51 51 H 1.09001 * 109.46847 * 179.97438 * 29 26 25 52 52 H 1.08997 * 109.46800 * 299.99051 * 29 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.9091 1.0220 0.0000 4 6 2.0645 -0.7683 -1.2229 5 7 2.8343 -1.9234 -0.7123 6 6 3.9777 -2.2213 -1.5851 7 6 4.7837 -3.3473 -0.9905 8 8 4.3807 -3.9262 -0.0037 9 7 5.9521 -3.7112 -1.5551 10 6 6.6849 -4.7359 -1.0144 11 1 6.3258 -5.2518 -0.1362 12 6 7.8898 -5.1107 -1.5963 13 7 8.3270 -4.4825 -2.6646 14 14 8.8881 -6.5073 -0.8600 15 1 8.0804 -7.7535 -0.8730 16 1 10.1228 -6.7087 -1.6601 17 1 9.2548 -6.1698 0.5389 18 6 3.2856 -1.5347 0.6514 19 6 2.0666 -0.7714 1.2276 20 1 1.3173 -1.4683 1.6029 21 6 2.5012 0.1981 2.3286 22 7 2.8916 -0.5596 3.5202 23 6 3.3124 0.0897 4.6237 24 8 3.3674 1.3036 4.6304 25 8 3.6707 -0.6065 5.7189 26 6 4.1143 0.1586 6.8705 27 6 2.9908 1.0919 7.3262 28 6 4.4770 -0.7972 8.0088 29 6 5.3428 0.9872 6.4899 30 1 -0.3633 -1.0276 0.0122 31 1 -0.3633 0.5245 0.8837 32 1 -0.3633 0.5031 -0.8961 33 1 1.2328 -1.1175 -1.8346 34 1 2.7135 -0.1213 -1.8133 35 1 3.6159 -2.5143 -2.5706 36 1 4.6051 -1.3347 -1.6773 37 1 6.2744 -3.2480 -2.3441 38 1 9.1680 -4.7444 -3.0709 39 1 4.1564 -0.8818 0.5940 40 1 3.5047 -2.4183 1.2511 41 1 3.3484 0.7882 1.9795 42 1 1.6729 0.8622 2.5756 43 1 2.8473 -1.5285 3.5149 44 1 2.1154 0.5016 7.5972 45 1 3.3238 1.6665 8.1904 46 1 2.7326 1.7728 6.5151 47 1 5.2775 -1.4618 7.6840 48 1 4.8096 -0.2228 8.8735 49 1 3.6021 -1.3879 8.2801 50 1 5.0848 1.6681 5.6789 51 1 5.6755 1.5619 7.3543 52 1 6.1432 0.3223 6.1654 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000879212535.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:25:31 Heat of formation + Delta-G solvation = -122.291582 kcal Electronic energy + Delta-G solvation = -30707.133075 eV Core-core repulsion = 26513.441944 eV Total energy + Delta-G solvation = -4193.691131 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 341.215 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -40.84158 -39.59447 -37.96235 -37.29200 -35.03126 -34.18531 -33.91931 -32.94393 -31.23989 -30.21394 -27.76065 -27.59997 -27.54903 -26.07785 -24.98763 -23.52496 -22.18056 -20.84612 -20.54012 -19.67975 -19.19187 -18.16815 -17.85449 -16.79937 -16.38586 -16.16570 -15.59815 -15.18382 -14.94086 -14.87265 -14.52292 -14.48569 -14.24974 -13.96114 -13.65789 -13.59566 -13.42964 -13.13409 -12.93251 -12.68203 -12.41485 -12.32854 -12.20890 -12.08332 -12.06460 -11.69892 -11.59709 -11.51192 -11.49751 -11.40449 -11.15845 -10.92383 -10.88060 -10.67249 -10.57060 -10.48624 -10.43447 -10.22021 -10.12410 -9.48159 -9.23191 -8.42038 -8.02726 -7.92886 -6.42363 -3.83193 2.10636 2.79810 3.19473 3.25341 3.29575 3.89655 4.01881 4.05229 4.23057 4.51424 4.53295 4.57692 4.60727 4.71757 4.72407 5.06936 5.12929 5.18344 5.24311 5.26803 5.32529 5.34592 5.41762 5.47490 5.49119 5.56267 5.57861 5.61039 5.67126 5.67325 5.73761 5.79541 5.88314 5.92605 5.94863 5.99292 6.04993 6.10910 6.14405 6.24816 6.27526 6.33311 6.46429 6.48568 7.16395 7.25546 7.37149 7.54295 8.05163 8.33002 8.60822 9.17156 9.53469 10.05049 10.75353 Molecular weight = 341.21amu Principal moments of inertia in cm(-1) A = 0.008173 B = 0.002926 C = 0.002250 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3424.885173 B = 9568.389627 C =12441.158978 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.092 4.092 3 H 0.077 0.923 4 C 0.036 3.964 5 N -0.493 5.493 6 C 0.037 3.963 7 C 0.443 3.557 8 O -0.579 6.579 9 N -0.563 5.563 10 C -0.299 4.299 11 H 0.103 0.897 12 C 0.023 3.977 13 N -0.902 5.902 14 Si 0.930 3.070 15 H -0.273 1.273 16 H -0.284 1.284 17 H -0.274 1.274 18 C 0.045 3.955 19 C -0.105 4.105 20 H 0.093 0.907 21 C 0.150 3.850 22 N -0.707 5.707 23 C 0.651 3.349 24 O -0.574 6.574 25 O -0.364 6.364 26 C 0.136 3.864 27 C -0.182 4.182 28 C -0.142 4.142 29 C -0.184 4.184 30 H 0.061 0.939 31 H 0.054 0.946 32 H 0.055 0.945 33 H 0.080 0.920 34 H 0.043 0.957 35 H 0.090 0.910 36 H 0.047 0.953 37 H 0.392 0.608 38 H 0.272 0.728 39 H 0.039 0.961 40 H 0.106 0.894 41 H 0.070 0.930 42 H 0.071 0.929 43 H 0.410 0.590 44 H 0.059 0.941 45 H 0.068 0.932 46 H 0.087 0.913 47 H 0.068 0.932 48 H 0.079 0.921 49 H 0.066 0.934 50 H 0.087 0.913 51 H 0.069 0.931 52 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.826 12.636 12.230 21.192 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.111 4.111 3 H 0.095 0.905 4 C -0.092 4.092 5 N -0.216 5.216 6 C -0.095 4.095 7 C 0.228 3.772 8 O -0.464 6.464 9 N -0.200 5.200 10 C -0.429 4.429 11 H 0.120 0.880 12 C -0.179 4.179 13 N -0.543 5.543 14 Si 0.757 3.243 15 H -0.199 1.199 16 H -0.210 1.210 17 H -0.199 1.199 18 C -0.082 4.082 19 C -0.124 4.124 20 H 0.112 0.888 21 C 0.027 3.973 22 N -0.366 5.366 23 C 0.404 3.596 24 O -0.464 6.464 25 O -0.278 6.278 26 C 0.099 3.901 27 C -0.240 4.240 28 C -0.199 4.199 29 C -0.242 4.242 30 H 0.081 0.919 31 H 0.073 0.927 32 H 0.074 0.926 33 H 0.098 0.902 34 H 0.061 0.939 35 H 0.108 0.892 36 H 0.065 0.935 37 H 0.225 0.775 38 H 0.082 0.918 39 H 0.057 0.943 40 H 0.124 0.876 41 H 0.088 0.912 42 H 0.089 0.911 43 H 0.246 0.754 44 H 0.078 0.922 45 H 0.087 0.913 46 H 0.106 0.894 47 H 0.087 0.913 48 H 0.098 0.902 49 H 0.085 0.915 50 H 0.106 0.894 51 H 0.087 0.913 52 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -12.162 12.340 12.851 21.572 hybrid contribution 1.409 -0.051 -0.390 1.463 sum -10.754 12.289 12.461 20.541 Atomic orbital electron populations 1.21832 0.94152 1.02342 1.01491 1.21927 0.96438 0.98935 0.93847 0.90478 1.23021 0.98289 0.91434 0.96433 1.64582 1.20527 1.34612 1.01914 1.22087 0.92060 0.97820 0.97524 1.19706 0.83173 0.87250 0.87077 1.90478 1.70845 1.57257 1.27773 1.41861 1.18151 1.32132 1.27835 1.19646 1.01111 1.10294 1.11821 0.87956 1.25261 0.97484 0.99019 0.96142 1.69605 1.22349 1.41697 1.20687 0.85926 0.78629 0.80918 0.78802 1.19857 1.20983 1.19915 1.23440 0.94201 0.99664 0.90937 1.22498 0.98992 0.96932 0.93981 0.88848 1.21374 1.00130 0.93504 0.82296 1.44773 1.69306 1.11187 1.11359 1.18070 0.76691 0.84123 0.80727 1.90880 1.59320 1.12473 1.83696 1.86323 1.78472 1.41031 1.22011 1.22050 0.94394 0.91250 0.82366 1.22512 0.97936 1.00352 1.03159 1.21864 1.02731 0.99401 0.95877 1.22520 0.96759 1.01100 1.03778 0.91944 0.92718 0.92571 0.90201 0.93897 0.89150 0.93509 0.77498 0.91813 0.94267 0.87558 0.91193 0.91084 0.75416 0.92242 0.91257 0.89400 0.91281 0.90229 0.91484 0.89388 0.91250 0.91978 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.21 8.89 37.16 0.33 -0.88 16 2 C -0.09 -0.94 3.16 -89.26 -0.28 -1.22 16 3 H 0.08 0.72 7.85 -51.93 -0.41 0.31 16 4 C 0.04 0.45 6.35 -2.75 -0.02 0.43 16 5 N -0.49 -7.96 5.11 -231.64 -1.18 -9.14 16 6 C 0.04 0.65 5.31 -4.98 -0.03 0.63 16 7 C 0.44 10.32 7.42 -10.99 -0.08 10.24 16 8 O -0.58 -15.19 13.89 5.54 0.08 -15.12 16 9 N -0.56 -14.21 5.29 -10.96 -0.06 -14.27 16 10 C -0.30 -8.30 9.68 -14.93 -0.14 -8.44 16 11 H 0.10 2.96 7.16 -52.49 -0.38 2.59 16 12 C 0.02 0.60 5.50 -17.46 -0.10 0.51 16 13 N -0.90 -24.55 13.05 55.50 0.72 -23.82 16 14 Si 0.93 21.04 29.55 -169.99 -5.02 16.01 16 15 H -0.27 -6.14 7.11 56.52 0.40 -5.73 16 16 H -0.28 -6.28 7.11 56.52 0.40 -5.88 16 17 H -0.27 -6.15 7.11 56.52 0.40 -5.75 16 18 C 0.05 0.70 4.97 -1.74 -0.01 0.69 16 19 C -0.10 -1.20 2.61 -88.76 -0.23 -1.43 16 20 H 0.09 1.06 7.86 -51.93 -0.41 0.66 16 21 C 0.15 1.68 5.00 -4.04 -0.02 1.66 16 22 N -0.71 -8.58 5.48 -65.28 -0.36 -8.93 16 23 C 0.65 8.91 8.06 54.05 0.44 9.34 16 24 O -0.57 -8.72 11.88 -19.28 -0.23 -8.95 16 25 O -0.36 -4.70 9.94 -40.28 -0.40 -5.10 16 26 C 0.14 1.44 1.13 -90.62 -0.10 1.34 16 27 C -0.18 -1.77 8.37 37.16 0.31 -1.46 16 28 C -0.14 -1.15 8.85 37.16 0.33 -0.82 16 29 C -0.18 -1.96 8.37 37.16 0.31 -1.65 16 30 H 0.06 0.58 8.13 -51.93 -0.42 0.16 16 31 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 32 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 33 H 0.08 0.92 7.68 -51.93 -0.40 0.52 16 34 H 0.04 0.50 7.68 -51.92 -0.40 0.10 16 35 H 0.09 1.48 8.14 -51.93 -0.42 1.05 16 36 H 0.05 0.77 7.99 -51.92 -0.41 0.35 16 37 H 0.39 9.50 7.90 -40.82 -0.32 9.18 16 38 H 0.27 7.03 8.31 -40.82 -0.34 6.69 16 39 H 0.04 0.63 7.82 -51.93 -0.41 0.23 16 40 H 0.11 1.97 6.46 -51.93 -0.34 1.63 16 41 H 0.07 0.85 8.00 -51.93 -0.42 0.43 16 42 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 43 H 0.41 4.69 8.58 -40.82 -0.35 4.34 16 44 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 45 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 46 H 0.09 1.04 5.88 -51.93 -0.31 0.74 16 47 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 48 H 0.08 0.49 8.14 -51.93 -0.42 0.06 16 49 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 50 H 0.09 1.13 5.88 -51.93 -0.31 0.82 16 51 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 52 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 LS Contribution 411.94 15.07 6.21 6.21 Total: -1.00 -31.88 411.94 -8.59 -40.47 By element: Atomic # 1 Polarization: 22.77 SS G_CDS: -9.05 Total: 13.72 kcal Atomic # 6 Polarization: 8.22 SS G_CDS: 0.71 Total: 8.93 kcal Atomic # 7 Polarization: -55.30 SS G_CDS: -0.88 Total: -56.17 kcal Atomic # 8 Polarization: -28.61 SS G_CDS: -0.55 Total: -29.17 kcal Atomic # 14 Polarization: 21.04 SS G_CDS: -5.02 Total: 16.01 kcal Total LS contribution 6.21 Total: 6.21 kcal Total: -31.88 -8.59 -40.47 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000879212535.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -81.826 kcal (2) G-P(sol) polarization free energy of solvation -31.875 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -113.701 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.591 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.466 kcal (6) G-S(sol) free energy of system = (1) + (5) -122.292 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds