Wall clock time and date at job start Wed Apr 1 2020 01:25:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09001 * 110.34996 * 2 1 4 4 C 1.53993 * 110.30690 * 237.86247 * 2 1 3 5 5 N 1.47908 * 107.22336 * 242.20571 * 4 2 1 6 6 C 1.46897 * 111.00072 * 214.25473 * 5 4 2 7 7 C 1.50703 * 109.47306 * 176.61381 * 6 5 4 8 8 O 1.21296 * 119.99416 * 6.14417 * 7 6 5 9 9 N 1.34774 * 120.00292 * 186.13956 * 7 6 5 10 10 C 1.37094 * 119.99583 * 180.02562 * 9 7 6 11 11 H 1.07999 * 120.00525 * 0.02562 * 10 9 7 12 12 C 1.38960 * 119.99524 * 180.02562 * 10 9 7 13 13 N 1.31412 * 119.99916 * 0.02562 * 12 10 9 14 14 Si 1.86794 * 119.99922 * 180.02562 * 12 10 9 15 15 H 1.48503 * 109.47258 * 59.99878 * 14 12 10 16 16 H 1.48500 * 109.47258 * 180.02562 * 14 12 10 17 17 H 1.48504 * 109.47123 * 300.00291 * 14 12 10 18 18 C 1.48811 * 105.67826 * 334.90819 * 5 4 2 19 19 C 1.54595 * 110.30780 * 122.14195 * 2 1 3 20 20 H 1.08996 * 110.72097 * 22.52215 * 19 2 1 21 21 C 1.52996 * 110.72379 * 259.40925 * 19 2 1 22 22 N 1.46505 * 109.46847 * 175.00040 * 21 19 2 23 23 C 1.34775 * 120.00226 * 180.02562 * 22 21 19 24 24 O 1.21515 * 119.99356 * 0.02562 * 23 22 21 25 25 O 1.34624 * 120.00410 * 179.97438 * 23 22 21 26 26 C 1.45200 * 117.00391 * 179.97438 * 25 23 22 27 27 C 1.53001 * 109.46737 * 60.00672 * 26 25 23 28 28 C 1.52998 * 109.47528 * 180.02562 * 26 25 23 29 29 C 1.52998 * 109.47231 * 300.00786 * 26 25 23 30 30 H 1.09002 * 109.46796 * 180.68087 * 1 2 3 31 31 H 1.08998 * 109.46925 * 300.68878 * 1 2 3 32 32 H 1.08998 * 109.46913 * 60.68855 * 1 2 3 33 33 H 1.08994 * 109.92289 * 1.65757 * 4 2 1 34 34 H 1.09009 * 109.91688 * 122.76301 * 4 2 1 35 35 H 1.08996 * 109.47542 * 296.62245 * 6 5 4 36 36 H 1.09010 * 109.46875 * 56.61739 * 6 5 4 37 37 H 0.97003 * 119.99922 * 0.02562 * 9 7 6 38 38 H 0.96997 * 119.99530 * 180.02562 * 13 12 10 39 39 H 1.08994 * 110.51834 * 280.53989 * 18 5 4 40 40 H 1.09006 * 110.69606 * 157.49055 * 18 5 4 41 41 H 1.08998 * 109.47207 * 295.00116 * 21 19 2 42 42 H 1.09002 * 109.46866 * 55.00665 * 21 19 2 43 43 H 0.96998 * 119.99776 * 0.02562 * 22 21 19 44 44 H 1.08997 * 109.47746 * 59.99337 * 27 26 25 45 45 H 1.09000 * 109.47282 * 180.02562 * 27 26 25 46 46 H 1.09006 * 109.47218 * 299.99966 * 27 26 25 47 47 H 1.08994 * 109.47076 * 59.99981 * 28 26 25 48 48 H 1.09001 * 109.47284 * 180.02562 * 28 26 25 49 49 H 1.09000 * 109.47359 * 300.00626 * 28 26 25 50 50 H 1.08990 * 109.47291 * 59.99533 * 29 26 25 51 51 H 1.09001 * 109.46847 * 179.97438 * 29 26 25 52 52 H 1.08997 * 109.46800 * 299.99051 * 29 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.9091 1.0220 0.0000 4 6 2.0645 -0.7683 -1.2229 5 7 2.8343 -1.9234 -0.7123 6 6 3.9777 -2.2213 -1.5851 7 6 4.7837 -3.3473 -0.9905 8 8 4.3807 -3.9262 -0.0037 9 7 5.9521 -3.7112 -1.5551 10 6 6.6849 -4.7359 -1.0144 11 1 6.3258 -5.2518 -0.1362 12 6 7.8898 -5.1107 -1.5963 13 7 8.3270 -4.4825 -2.6646 14 14 8.8881 -6.5073 -0.8600 15 1 8.0804 -7.7535 -0.8730 16 1 10.1228 -6.7087 -1.6601 17 1 9.2548 -6.1698 0.5389 18 6 3.2856 -1.5347 0.6514 19 6 2.0666 -0.7714 1.2276 20 1 1.3173 -1.4683 1.6029 21 6 2.5012 0.1981 2.3286 22 7 2.8916 -0.5596 3.5202 23 6 3.3124 0.0897 4.6237 24 8 3.3674 1.3036 4.6304 25 8 3.6707 -0.6065 5.7189 26 6 4.1143 0.1586 6.8705 27 6 2.9908 1.0919 7.3262 28 6 4.4770 -0.7972 8.0088 29 6 5.3428 0.9872 6.4899 30 1 -0.3633 -1.0276 0.0122 31 1 -0.3633 0.5245 0.8837 32 1 -0.3633 0.5031 -0.8961 33 1 1.2328 -1.1175 -1.8346 34 1 2.7135 -0.1213 -1.8133 35 1 3.6159 -2.5143 -2.5706 36 1 4.6051 -1.3347 -1.6773 37 1 6.2744 -3.2480 -2.3441 38 1 9.1680 -4.7444 -3.0709 39 1 4.1564 -0.8818 0.5940 40 1 3.5047 -2.4183 1.2511 41 1 3.3484 0.7882 1.9795 42 1 1.6729 0.8622 2.5756 43 1 2.8473 -1.5285 3.5149 44 1 2.1154 0.5016 7.5972 45 1 3.3238 1.6665 8.1904 46 1 2.7326 1.7728 6.5151 47 1 5.2775 -1.4618 7.6840 48 1 4.8096 -0.2228 8.8735 49 1 3.6021 -1.3879 8.2801 50 1 5.0848 1.6681 5.6789 51 1 5.6755 1.5619 7.3543 52 1 6.1432 0.3223 6.1654 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000879212535.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:25:30 Heat of formation + Delta-G solvation = -145.832377 kcal Electronic energy + Delta-G solvation = -30708.153881 eV Core-core repulsion = 26513.441944 eV Total energy + Delta-G solvation = -4194.711936 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 341.215 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -41.83698 -40.85911 -39.56777 -38.34274 -36.20941 -35.88124 -35.01499 -34.07150 -33.25296 -31.20987 -29.18368 -28.36292 -28.30078 -27.07862 -26.71089 -24.75706 -23.23779 -21.96097 -21.47009 -21.00136 -20.61389 -19.88074 -19.13137 -17.94804 -17.63430 -17.32745 -16.89055 -16.45630 -16.30911 -16.23415 -15.84176 -15.69264 -15.43955 -15.25327 -14.92185 -14.61487 -14.44315 -14.37163 -13.99169 -13.76425 -13.54385 -13.39679 -13.34175 -13.09381 -12.95930 -12.91146 -12.86781 -12.76794 -12.49991 -12.45917 -12.41429 -12.33716 -12.19832 -12.12210 -11.74766 -11.64911 -11.57261 -11.41797 -11.38981 -11.11475 -10.26212 -10.22006 -10.01273 -9.30457 -8.47321 -5.95836 1.18109 1.38643 1.40422 1.51341 1.74226 2.04363 2.27817 2.83525 3.12739 3.19709 3.29007 3.57183 3.72550 3.75151 3.80024 3.81472 3.94811 4.20406 4.25250 4.30187 4.34092 4.42516 4.49624 4.54727 4.60313 4.61794 4.66604 4.69681 4.73669 4.76304 4.77889 4.85082 4.87280 4.98462 5.03431 5.09228 5.13428 5.19361 5.27491 5.28375 5.29815 5.36561 5.40086 5.50105 5.56753 5.86375 5.97538 6.11904 6.35293 6.59799 7.12084 7.30442 7.55433 8.10975 8.70090 Molecular weight = 341.21amu Principal moments of inertia in cm(-1) A = 0.008173 B = 0.002926 C = 0.002250 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3424.885173 B = 9568.389627 C =12441.158978 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.085 4.085 3 H 0.092 0.908 4 C 0.035 3.965 5 N -0.511 5.511 6 C 0.048 3.952 7 C 0.440 3.560 8 O -0.612 6.612 9 N -0.575 5.575 10 C -0.332 4.332 11 H 0.080 0.920 12 C -0.013 4.013 13 N -0.922 5.922 14 Si 0.992 3.008 15 H -0.271 1.271 16 H -0.271 1.271 17 H -0.272 1.272 18 C 0.047 3.953 19 C -0.088 4.088 20 H 0.096 0.904 21 C 0.155 3.845 22 N -0.706 5.706 23 C 0.646 3.354 24 O -0.591 6.591 25 O -0.374 6.374 26 C 0.122 3.878 27 C -0.176 4.176 28 C -0.137 4.137 29 C -0.181 4.181 30 H 0.054 0.946 31 H 0.065 0.935 32 H 0.070 0.930 33 H 0.091 0.909 34 H 0.054 0.946 35 H 0.110 0.890 36 H 0.064 0.936 37 H 0.395 0.605 38 H 0.277 0.723 39 H 0.027 0.973 40 H 0.069 0.931 41 H 0.061 0.939 42 H 0.086 0.914 43 H 0.412 0.588 44 H 0.063 0.937 45 H 0.092 0.908 46 H 0.064 0.936 47 H 0.062 0.938 48 H 0.105 0.895 49 H 0.070 0.930 50 H 0.063 0.937 51 H 0.094 0.906 52 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.615 13.596 12.655 22.453 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.105 4.105 3 H 0.110 0.890 4 C -0.092 4.092 5 N -0.236 5.236 6 C -0.083 4.083 7 C 0.227 3.773 8 O -0.498 6.498 9 N -0.212 5.212 10 C -0.461 4.461 11 H 0.098 0.902 12 C -0.213 4.213 13 N -0.563 5.563 14 Si 0.815 3.185 15 H -0.196 1.196 16 H -0.195 1.195 17 H -0.197 1.197 18 C -0.081 4.081 19 C -0.107 4.107 20 H 0.114 0.886 21 C 0.033 3.967 22 N -0.365 5.365 23 C 0.399 3.601 24 O -0.483 6.483 25 O -0.289 6.289 26 C 0.086 3.914 27 C -0.233 4.233 28 C -0.194 4.194 29 C -0.238 4.238 30 H 0.073 0.927 31 H 0.084 0.916 32 H 0.089 0.911 33 H 0.110 0.890 34 H 0.072 0.928 35 H 0.128 0.872 36 H 0.082 0.918 37 H 0.229 0.771 38 H 0.087 0.913 39 H 0.046 0.954 40 H 0.087 0.913 41 H 0.079 0.921 42 H 0.104 0.896 43 H 0.248 0.752 44 H 0.082 0.918 45 H 0.111 0.889 46 H 0.083 0.917 47 H 0.081 0.919 48 H 0.123 0.877 49 H 0.089 0.911 50 H 0.082 0.918 51 H 0.112 0.888 52 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -12.967 13.313 13.259 22.829 hybrid contribution 1.626 -0.329 -0.499 1.732 sum -11.341 12.984 12.760 21.448 Atomic orbital electron populations 1.21800 0.92469 1.02252 1.02810 1.21945 0.97717 0.99029 0.91763 0.88960 1.23147 0.98193 0.90407 0.97476 1.64547 1.19886 1.37202 1.01939 1.21969 0.92288 0.96019 0.98055 1.20721 0.82634 0.87684 0.86221 1.90461 1.71492 1.58640 1.29204 1.41939 1.18903 1.32159 1.28216 1.19621 1.02534 1.11852 1.12136 0.90241 1.26036 0.97857 1.01051 0.96357 1.69668 1.22778 1.42588 1.21245 0.85008 0.77428 0.77897 0.78144 1.19594 1.19516 1.19749 1.23276 0.95700 0.98292 0.90822 1.22361 0.97073 0.96733 0.94558 0.88588 1.21370 1.00217 0.93327 0.81794 1.44865 1.68901 1.11366 1.11347 1.18232 0.76677 0.84028 0.81139 1.90869 1.60137 1.13175 1.84090 1.86333 1.78389 1.41729 1.22447 1.22440 0.94607 0.92069 0.82263 1.22447 0.97853 0.99917 1.03101 1.21897 1.02739 0.99193 0.95602 1.22484 0.96656 1.00714 1.03964 0.92730 0.91605 0.91108 0.89040 0.92791 0.87207 0.91833 0.77133 0.91320 0.95426 0.91294 0.92094 0.89573 0.75210 0.91805 0.88920 0.91747 0.91872 0.87657 0.91062 0.91846 0.88755 0.92741 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.93 8.89 71.98 0.64 -1.29 16 2 C -0.09 -1.53 3.16 -9.91 -0.03 -1.56 16 3 H 0.09 1.44 7.85 -2.39 -0.02 1.42 16 4 C 0.04 0.78 6.35 86.44 0.55 1.33 16 5 N -0.51 -16.21 5.11 -886.76 -4.54 -20.74 16 6 C 0.05 1.69 5.31 85.56 0.45 2.14 16 7 C 0.44 21.03 7.42 87.66 0.65 21.68 16 8 O -0.61 -33.38 13.89 -3.08 -0.04 -33.42 16 9 N -0.57 -29.77 5.29 -306.98 -1.62 -31.39 16 10 C -0.33 -18.95 9.68 84.04 0.81 -18.13 16 11 H 0.08 4.81 7.16 -2.91 -0.02 4.79 16 12 C -0.01 -0.72 5.50 84.93 0.47 -0.25 16 13 N -0.92 -50.21 13.05 21.67 0.28 -49.93 16 14 Si 0.99 43.23 29.55 68.60 2.03 45.26 16 15 H -0.27 -11.64 7.11 99.48 0.71 -10.93 16 16 H -0.27 -11.12 7.11 99.48 0.71 -10.41 16 17 H -0.27 -11.73 7.11 99.48 0.71 -11.03 16 18 C 0.05 1.48 4.97 86.60 0.43 1.91 16 19 C -0.09 -1.94 2.61 -9.59 -0.03 -1.96 16 20 H 0.10 2.10 7.86 -2.39 -0.02 2.09 16 21 C 0.16 3.38 5.00 86.38 0.43 3.81 16 22 N -0.71 -17.38 5.48 -590.86 -3.24 -20.62 16 23 C 0.65 17.98 8.06 129.79 1.05 19.02 16 24 O -0.59 -18.23 11.88 19.80 0.24 -18.00 16 25 O -0.37 -9.80 9.94 -55.33 -0.55 -10.35 16 26 C 0.12 2.52 1.13 -10.79 -0.01 2.51 16 27 C -0.18 -3.24 8.37 71.98 0.60 -2.64 16 28 C -0.14 -2.03 8.85 71.98 0.64 -1.39 16 29 C -0.18 -3.80 8.37 71.98 0.60 -3.20 16 30 H 0.05 0.88 8.13 -2.39 -0.02 0.86 16 31 H 0.06 0.81 8.14 -2.39 -0.02 0.79 16 32 H 0.07 0.83 8.14 -2.39 -0.02 0.81 16 33 H 0.09 1.84 7.68 -2.39 -0.02 1.82 16 34 H 0.05 1.10 7.68 -2.38 -0.02 1.08 16 35 H 0.11 3.43 8.14 -2.39 -0.02 3.41 16 36 H 0.06 2.02 7.99 -2.38 -0.02 2.00 16 37 H 0.40 19.54 7.90 -92.71 -0.73 18.80 16 38 H 0.28 14.18 8.31 -92.71 -0.77 13.41 16 39 H 0.03 0.91 7.82 -2.39 -0.02 0.90 16 40 H 0.07 2.69 6.46 -2.38 -0.02 2.68 16 41 H 0.06 1.46 8.00 -2.39 -0.02 1.44 16 42 H 0.09 1.66 8.14 -2.39 -0.02 1.64 16 43 H 0.41 9.79 8.58 -92.71 -0.80 8.99 16 44 H 0.06 1.10 8.14 -2.39 -0.02 1.08 16 45 H 0.09 1.23 8.14 -2.39 -0.02 1.21 16 46 H 0.06 1.52 5.88 -2.38 -0.01 1.50 16 47 H 0.06 1.01 8.14 -2.39 -0.02 0.99 16 48 H 0.10 1.01 8.14 -2.39 -0.02 0.99 16 49 H 0.07 1.00 8.14 -2.39 -0.02 0.98 16 50 H 0.06 1.66 5.88 -2.39 -0.01 1.65 16 51 H 0.09 1.44 8.14 -2.39 -0.02 1.42 16 52 H 0.05 1.19 8.14 -2.39 -0.02 1.17 16 Total: -1.00 -70.87 411.94 -0.79 -71.66 By element: Atomic # 1 Polarization: 46.16 SS G_CDS: -0.61 Total: 45.56 kcal Atomic # 6 Polarization: 14.72 SS G_CDS: 7.26 Total: 21.97 kcal Atomic # 7 Polarization: -113.57 SS G_CDS: -9.11 Total: -122.69 kcal Atomic # 8 Polarization: -61.41 SS G_CDS: -0.36 Total: -61.77 kcal Atomic # 14 Polarization: 43.23 SS G_CDS: 2.03 Total: 45.26 kcal Total: -70.87 -0.79 -71.66 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000879212535.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -74.171 kcal (2) G-P(sol) polarization free energy of solvation -70.869 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -145.040 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.792 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.661 kcal (6) G-S(sol) free energy of system = (1) + (5) -145.832 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds