Wall clock time and date at job start Wed Apr 1 2020 00:39:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09001 * 110.36642 * 2 1 4 4 C 1.54379 * 110.41580 * 237.64911 * 2 1 3 5 5 C 1.54256 * 105.06038 * 217.36997 * 4 2 1 6 6 H 1.09002 * 110.32095 * 241.10157 * 5 4 2 7 7 N 1.46508 * 110.32335 * 118.89865 * 5 4 2 8 8 C 1.34765 * 119.99906 * 154.99851 * 7 5 4 9 9 O 1.21516 * 120.00738 * 359.97438 * 8 7 5 10 10 O 1.34643 * 119.99914 * 179.97438 * 8 7 5 11 11 C 1.45205 * 117.00234 * 179.97438 * 10 8 7 12 12 C 1.53002 * 109.46637 * 60.00039 * 11 10 8 13 13 C 1.52991 * 109.47287 * 179.97438 * 11 10 8 14 14 C 1.52998 * 109.46974 * 300.00192 * 11 10 8 15 15 C 1.54374 * 105.06144 * 359.97438 * 5 4 2 16 16 N 1.48556 * 104.59880 * 23.85513 * 15 5 4 17 17 C 1.46894 * 111.00131 * 200.96281 * 16 15 5 18 18 C 1.50704 * 109.46697 * 285.41079 * 17 16 15 19 19 O 1.21279 * 120.00064 * 0.02562 * 18 17 16 20 20 N 1.34782 * 119.99646 * 179.97438 * 18 17 16 21 21 C 1.46502 * 119.99592 * 180.02562 * 20 18 17 22 22 C 1.50700 * 109.46994 * 180.02562 * 21 20 18 23 23 H 1.08007 * 119.99917 * 0.02562 * 22 21 20 24 24 C 1.37880 * 120.00177 * 179.97438 * 22 21 20 25 25 N 1.31515 * 119.99629 * 0.02562 * 24 22 21 26 26 Si 1.86799 * 119.99845 * 180.02562 * 24 22 21 27 27 H 1.48497 * 109.47128 * 90.00540 * 26 24 22 28 28 H 1.48501 * 109.46728 * 210.00036 * 26 24 22 29 29 H 1.48499 * 109.47319 * 330.00147 * 26 24 22 30 30 H 1.09002 * 109.47153 * 180.89601 * 1 2 3 31 31 H 1.09001 * 109.46832 * 60.89792 * 1 2 3 32 32 H 1.09004 * 109.47261 * 300.89774 * 1 2 3 33 33 H 1.08999 * 110.31736 * 336.26598 * 4 2 1 34 34 H 1.09004 * 110.32281 * 98.47017 * 4 2 1 35 35 H 0.96994 * 119.99401 * 334.98967 * 7 5 4 36 36 H 1.08998 * 109.47228 * 60.00450 * 12 11 10 37 37 H 1.09006 * 109.46825 * 179.97438 * 12 11 10 38 38 H 1.08998 * 109.47312 * 299.99900 * 12 11 10 39 39 H 1.09004 * 109.46844 * 59.99701 * 13 11 10 40 40 H 1.08993 * 109.47545 * 180.02562 * 13 11 10 41 41 H 1.09006 * 109.47286 * 300.00416 * 13 11 10 42 42 H 1.08998 * 109.47308 * 59.99896 * 14 11 10 43 43 H 1.09004 * 109.47035 * 179.97438 * 14 11 10 44 44 H 1.08994 * 109.47147 * 299.99641 * 14 11 10 45 45 H 1.09002 * 110.40853 * 142.63636 * 15 5 4 46 46 H 1.09001 * 110.41282 * 264.94961 * 15 5 4 47 47 H 1.08997 * 109.47621 * 45.41381 * 17 16 15 48 48 H 1.09005 * 109.47116 * 165.41942 * 17 16 15 49 49 H 0.96995 * 120.00482 * 0.02562 * 20 18 17 50 50 H 1.08997 * 109.46937 * 300.00109 * 21 20 18 51 51 H 1.08996 * 109.47288 * 60.00279 * 21 20 18 52 52 H 0.97002 * 119.99537 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9093 1.0219 0.0000 4 6 2.0685 -0.7742 -1.2223 5 6 3.3178 -1.5180 -0.7069 6 1 4.2042 -1.1908 -1.2504 7 7 3.1408 -2.9658 -0.8446 8 6 4.2178 -3.7696 -0.9459 9 8 5.3356 -3.2937 -0.9236 10 8 4.0552 -5.1003 -1.0719 11 6 5.2596 -5.9046 -1.1766 12 6 6.1123 -5.7117 0.0790 13 6 4.8775 -7.3799 -1.3112 14 6 6.0579 -5.4696 -2.4071 15 6 3.4294 -1.1302 0.7831 16 7 2.0486 -0.7468 1.1747 17 6 2.0577 0.1000 2.3750 18 6 2.3511 -0.7481 3.5857 19 8 2.5351 -1.9403 3.4608 20 7 2.4102 -0.1814 4.8071 21 6 2.6960 -1.0057 5.9840 22 6 2.7052 -0.1371 7.2155 23 1 2.5166 0.9229 7.1300 24 6 2.9534 -0.6958 8.4513 25 7 3.1826 -1.9866 8.5554 26 14 2.9641 0.3809 9.9778 27 1 1.5965 0.4366 10.5539 28 1 3.9002 -0.1898 10.9794 29 1 3.4041 1.7517 9.6137 30 1 -0.3633 -1.0276 0.0161 31 1 -0.3633 0.4998 -0.8980 32 1 -0.3634 0.5277 0.8819 33 1 1.3236 -1.4862 -1.5775 34 1 2.3417 -0.0818 -2.0186 35 1 2.2486 -3.3457 -0.8627 36 1 5.5435 -6.0216 0.9557 37 1 7.0162 -6.3159 0.0007 38 1 6.3845 -4.6607 0.1754 39 1 4.2696 -7.5176 -2.2055 40 1 5.7815 -7.9838 -1.3894 41 1 4.3088 -7.6895 -0.4343 42 1 6.3302 -4.4186 -2.3107 43 1 6.9623 -6.0731 -2.4855 44 1 5.4505 -5.6071 -3.3016 45 1 3.7693 -1.9814 1.3730 46 1 4.1094 -0.2873 0.9067 47 1 2.8260 0.8663 2.2733 48 1 1.0836 0.5752 2.4918 49 1 2.2634 0.7722 4.9070 50 1 1.9276 -1.7720 6.0861 51 1 3.6699 -1.4810 5.8669 52 1 3.3576 -2.3795 9.4248 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000879221264.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:39:26 Heat of formation + Delta-G solvation = -117.636331 kcal Electronic energy + Delta-G solvation = -30828.917309 eV Core-core repulsion = 26635.428045 eV Total energy + Delta-G solvation = -4193.489264 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 341.215 amu Computer time = 1.50 seconds Orbital eigenvalues (eV) -40.88237 -39.74939 -38.30666 -37.06964 -34.70833 -34.12595 -33.90944 -32.31910 -31.90756 -30.32443 -27.86491 -27.56498 -27.46037 -26.11649 -25.25627 -23.11922 -22.32344 -20.79025 -20.61085 -19.91455 -19.57107 -18.24429 -17.20835 -16.74802 -16.32882 -16.00505 -15.82534 -15.42399 -15.28314 -14.89575 -14.63868 -14.48182 -14.35438 -13.94298 -13.68401 -13.46118 -13.35931 -12.74896 -12.69671 -12.52047 -12.40560 -12.29512 -12.06484 -12.03745 -11.99500 -11.95637 -11.81879 -11.64656 -11.47033 -11.43320 -11.28538 -11.11205 -10.97365 -10.93579 -10.82394 -10.44003 -10.30075 -10.06111 -9.37885 -9.22341 -9.01896 -8.71425 -8.38781 -7.82652 -6.15155 -4.22028 2.12749 2.84429 3.24661 3.30595 3.33031 3.43945 3.66694 4.05874 4.21798 4.34856 4.40693 4.54374 4.58814 4.63486 4.77802 4.84266 5.03548 5.17487 5.20756 5.24546 5.30749 5.33120 5.35443 5.40258 5.44913 5.50151 5.52404 5.57091 5.61628 5.65787 5.68618 5.71402 5.75897 5.83747 5.85263 6.07363 6.11303 6.16584 6.25362 6.37675 6.52090 6.83745 6.90406 7.35057 7.40991 7.48965 7.55022 7.69813 7.99304 8.37952 8.67236 8.81700 9.17386 9.44872 10.95063 Molecular weight = 341.21amu Principal moments of inertia in cm(-1) A = 0.010372 B = 0.002578 C = 0.002151 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2698.990672 B =10857.298473 C =13012.591850 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C 0.054 3.946 3 H 0.055 0.945 4 C -0.125 4.125 5 C 0.161 3.839 6 H 0.099 0.901 7 N -0.695 5.695 8 C 0.652 3.348 9 O -0.571 6.571 10 O -0.365 6.365 11 C 0.137 3.863 12 C -0.185 4.185 13 C -0.141 4.141 14 C -0.182 4.182 15 C 0.023 3.977 16 N -0.482 5.482 17 C 0.024 3.976 18 C 0.499 3.501 19 O -0.536 6.536 20 N -0.717 5.717 21 C 0.252 3.748 22 C -0.543 4.543 23 H 0.062 0.938 24 C 0.063 3.937 25 N -0.885 5.885 26 Si 0.903 3.097 27 H -0.279 1.279 28 H -0.284 1.284 29 H -0.273 1.273 30 H 0.065 0.935 31 H 0.058 0.942 32 H 0.056 0.944 33 H 0.084 0.916 34 H 0.082 0.918 35 H 0.408 0.592 36 H 0.063 0.937 37 H 0.068 0.932 38 H 0.088 0.912 39 H 0.065 0.935 40 H 0.079 0.921 41 H 0.068 0.932 42 H 0.087 0.913 43 H 0.069 0.931 44 H 0.057 0.943 45 H 0.101 0.899 46 H 0.051 0.949 47 H 0.061 0.939 48 H 0.099 0.901 49 H 0.389 0.611 50 H 0.026 0.974 51 H 0.025 0.975 52 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.701 -0.713 -25.119 25.139 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.054 4.054 3 H 0.073 0.927 4 C -0.163 4.163 5 C 0.056 3.944 6 H 0.117 0.883 7 N -0.353 5.353 8 C 0.406 3.594 9 O -0.461 6.461 10 O -0.280 6.280 11 C 0.100 3.900 12 C -0.242 4.242 13 C -0.198 4.198 14 C -0.239 4.239 15 C -0.106 4.106 16 N -0.207 5.207 17 C -0.108 4.108 18 C 0.282 3.718 19 O -0.413 6.413 20 N -0.366 5.366 21 C 0.132 3.868 22 C -0.581 4.581 23 H 0.080 0.920 24 C -0.141 4.141 25 N -0.523 5.523 26 Si 0.731 3.269 27 H -0.205 1.205 28 H -0.210 1.210 29 H -0.198 1.198 30 H 0.085 0.915 31 H 0.077 0.923 32 H 0.075 0.925 33 H 0.102 0.898 34 H 0.101 0.899 35 H 0.243 0.757 36 H 0.082 0.918 37 H 0.087 0.913 38 H 0.107 0.893 39 H 0.084 0.916 40 H 0.098 0.902 41 H 0.087 0.913 42 H 0.106 0.894 43 H 0.087 0.913 44 H 0.076 0.924 45 H 0.119 0.881 46 H 0.069 0.931 47 H 0.079 0.921 48 H 0.117 0.883 49 H 0.221 0.779 50 H 0.044 0.956 51 H 0.043 0.957 52 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -0.247 -2.051 -24.906 24.992 hybrid contribution 0.110 1.556 1.006 1.856 sum -0.137 -0.495 -23.900 23.906 Atomic orbital electron populations 1.21725 0.93425 1.02845 1.01443 1.22712 0.96560 0.95945 0.90231 0.92655 1.22700 0.96747 0.99360 0.97494 1.21653 0.99029 0.77609 0.96067 0.88262 1.44755 1.07743 1.06027 1.76805 1.18082 0.84692 0.80788 0.75860 1.90890 1.23185 1.75877 1.56100 1.86303 1.38442 1.17237 1.85983 1.22047 0.82038 0.89502 0.96399 1.22526 0.99827 1.05319 0.96568 1.21859 1.02657 0.92008 1.03279 1.22507 1.00140 1.04784 0.96465 1.23670 0.89641 1.01987 0.95316 1.65153 1.18559 1.35822 1.01143 1.22219 1.02807 0.94799 0.90967 1.20247 0.78454 0.88711 0.84358 1.90658 1.49456 1.15335 1.85893 1.46445 1.70515 1.12164 1.07523 1.19058 0.96696 0.90759 0.80331 1.21232 1.50621 0.94715 0.91540 0.91954 1.24958 0.94769 0.95136 0.99196 1.69981 1.46768 1.10583 1.24925 0.86421 0.77995 0.80297 0.82224 1.20460 1.21008 1.19779 0.91548 0.92308 0.92461 0.89763 0.89923 0.75692 0.91822 0.91280 0.89280 0.91635 0.90221 0.91292 0.89387 0.91253 0.92384 0.88087 0.93064 0.92147 0.88309 0.77933 0.95624 0.95709 0.92467 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.16 9.31 37.16 0.35 -0.81 16 2 C 0.05 0.51 2.87 -66.08 -0.19 0.32 16 3 H 0.06 0.47 8.00 -51.93 -0.42 0.06 16 4 C -0.12 -1.00 6.31 -25.35 -0.16 -1.16 16 5 C 0.16 1.76 3.41 -66.55 -0.23 1.53 16 6 H 0.10 1.09 7.56 -51.93 -0.39 0.70 16 7 N -0.69 -8.16 5.07 -57.38 -0.29 -8.45 16 8 C 0.65 9.03 8.06 54.05 0.44 9.46 16 9 O -0.57 -8.95 11.53 -19.28 -0.22 -9.17 16 10 O -0.36 -4.75 9.94 -40.33 -0.40 -5.15 16 11 C 0.14 1.51 1.13 -90.62 -0.10 1.41 16 12 C -0.19 -2.22 8.37 37.16 0.31 -1.91 16 13 C -0.14 -1.18 8.85 37.15 0.33 -0.85 16 14 C -0.18 -1.81 8.37 37.16 0.31 -1.50 16 15 C 0.02 0.32 5.64 -2.19 -0.01 0.30 16 16 N -0.48 -6.48 4.66 -223.59 -1.04 -7.52 16 17 C 0.02 0.34 5.27 -4.98 -0.03 0.31 16 18 C 0.50 10.01 7.68 -10.98 -0.08 9.93 16 19 O -0.54 -13.09 15.22 5.56 0.08 -13.01 16 20 N -0.72 -15.20 5.55 -61.47 -0.34 -15.54 16 21 C 0.25 6.79 5.43 -5.19 -0.03 6.76 16 22 C -0.54 -14.86 9.28 -34.44 -0.32 -15.18 16 23 H 0.06 1.59 7.60 -52.48 -0.40 1.19 16 24 C 0.06 1.77 5.46 -17.82 -0.10 1.67 16 25 N -0.89 -26.39 13.29 55.43 0.74 -25.65 16 26 Si 0.90 21.00 29.54 -169.99 -5.02 15.98 16 27 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 28 H -0.28 -6.59 7.11 56.52 0.40 -6.18 16 29 H -0.27 -6.15 7.11 56.52 0.40 -5.75 16 30 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 31 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 32 H 0.06 0.51 7.36 -51.93 -0.38 0.13 16 33 H 0.08 0.62 7.38 -51.93 -0.38 0.23 16 34 H 0.08 0.51 8.14 -51.93 -0.42 0.09 16 35 H 0.41 4.22 8.47 -40.82 -0.35 3.88 16 36 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 37 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 38 H 0.09 1.29 5.88 -51.93 -0.31 0.98 16 39 H 0.06 0.50 8.14 -51.93 -0.42 0.07 16 40 H 0.08 0.52 8.14 -51.93 -0.42 0.10 16 41 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 42 H 0.09 1.07 5.88 -51.93 -0.31 0.76 16 43 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 44 H 0.06 0.53 8.14 -51.93 -0.42 0.10 16 45 H 0.10 1.84 7.15 -51.93 -0.37 1.47 16 46 H 0.05 0.68 7.76 -51.93 -0.40 0.27 16 47 H 0.06 0.75 7.77 -51.93 -0.40 0.34 16 48 H 0.10 1.19 7.21 -51.93 -0.37 0.82 16 49 H 0.39 6.99 8.32 -40.82 -0.34 6.65 16 50 H 0.03 0.77 8.14 -51.93 -0.42 0.34 16 51 H 0.02 0.74 8.14 -51.93 -0.42 0.32 16 52 H 0.27 7.42 8.31 -40.82 -0.34 7.08 16 LS Contribution 413.88 15.07 6.24 6.24 Total: -1.00 -34.41 413.88 -8.80 -43.21 By element: Atomic # 1 Polarization: 17.81 SS G_CDS: -9.03 Total: 8.78 kcal Atomic # 6 Polarization: 9.80 SS G_CDS: 0.49 Total: 10.28 kcal Atomic # 7 Polarization: -56.22 SS G_CDS: -0.94 Total: -57.16 kcal Atomic # 8 Polarization: -26.79 SS G_CDS: -0.54 Total: -27.33 kcal Atomic # 14 Polarization: 21.00 SS G_CDS: -5.02 Total: 15.98 kcal Total LS contribution 6.24 Total: 6.24 kcal Total: -34.41 -8.80 -43.21 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000879221264.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -74.428 kcal (2) G-P(sol) polarization free energy of solvation -34.407 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -108.835 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.801 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.208 kcal (6) G-S(sol) free energy of system = (1) + (5) -117.636 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.50 seconds