Wall clock time and date at job start Wed Apr 1 2020 00:39:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08997 * 110.36488 * 2 1 4 4 C 1.54380 * 110.41130 * 122.35016 * 2 1 3 5 5 C 1.54259 * 105.05727 * 142.75032 * 4 2 1 6 6 H 1.09002 * 110.32223 * 118.89718 * 5 4 2 7 7 N 1.46502 * 110.32097 * 240.99980 * 5 4 2 8 8 C 1.34775 * 120.00001 * 203.56879 * 7 5 4 9 9 O 1.21516 * 119.99788 * 0.02562 * 8 7 5 10 10 O 1.34642 * 120.00000 * 180.02562 * 8 7 5 11 11 C 1.45197 * 116.99927 * 180.02562 * 10 8 7 12 12 C 1.53003 * 109.47327 * 59.99932 * 11 10 8 13 13 C 1.52996 * 109.47470 * 180.02562 * 11 10 8 14 14 C 1.53006 * 109.47186 * 300.00210 * 11 10 8 15 15 C 1.54378 * 105.06267 * 0.02562 * 5 4 2 16 16 N 1.48559 * 110.51071 * 237.58349 * 2 1 3 17 17 C 1.46908 * 110.99826 * 82.13027 * 16 2 1 18 18 C 1.50706 * 109.46589 * 169.99901 * 17 16 2 19 19 O 1.21278 * 120.00179 * 0.02562 * 18 17 16 20 20 N 1.34783 * 119.99645 * 179.97438 * 18 17 16 21 21 C 1.46491 * 119.99677 * 179.97438 * 20 18 17 22 22 C 1.50704 * 109.47018 * 180.02562 * 21 20 18 23 23 H 1.07996 * 119.99713 * 0.02562 * 22 21 20 24 24 C 1.37880 * 120.00325 * 180.02562 * 22 21 20 25 25 N 1.31516 * 119.99583 * 0.02562 * 24 22 21 26 26 Si 1.86798 * 120.00060 * 180.02562 * 24 22 21 27 27 H 1.48497 * 109.47344 * 59.99835 * 26 24 22 28 28 H 1.48503 * 109.47026 * 179.97438 * 26 24 22 29 29 H 1.48504 * 109.47047 * 299.99905 * 26 24 22 30 30 H 1.09003 * 109.47155 * 299.10508 * 1 2 3 31 31 H 1.09003 * 109.46726 * 59.09995 * 1 2 3 32 32 H 1.08996 * 109.47007 * 179.10332 * 1 2 3 33 33 H 1.08994 * 110.32234 * 23.85513 * 4 2 1 34 34 H 1.08997 * 110.40745 * 261.69257 * 4 2 1 35 35 H 0.96998 * 119.99803 * 23.58247 * 7 5 4 36 36 H 1.08994 * 109.47051 * 60.00172 * 12 11 10 37 37 H 1.08997 * 109.47323 * 180.02562 * 12 11 10 38 38 H 1.08998 * 109.47044 * 299.99949 * 12 11 10 39 39 H 1.09000 * 109.46865 * 59.99382 * 13 11 10 40 40 H 1.08997 * 109.47300 * 179.97438 * 13 11 10 41 41 H 1.09001 * 109.46698 * 300.00433 * 13 11 10 42 42 H 1.09002 * 109.46942 * 59.99763 * 14 11 10 43 43 H 1.08997 * 109.47360 * 179.97438 * 14 11 10 44 44 H 1.09000 * 109.46788 * 300.00397 * 14 11 10 45 45 H 1.08990 * 110.41475 * 94.92702 * 15 5 4 46 46 H 1.09004 * 110.41072 * 217.36977 * 15 5 4 47 47 H 1.08992 * 109.47146 * 289.99854 * 17 16 2 48 48 H 1.08994 * 109.47074 * 50.00284 * 17 16 2 49 49 H 0.97000 * 119.99538 * 0.02562 * 20 18 17 50 50 H 1.08997 * 109.47928 * 300.00210 * 21 20 18 51 51 H 1.08998 * 109.47398 * 60.00524 * 21 20 18 52 52 H 0.96996 * 119.99646 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9094 1.0218 0.0000 4 6 2.0685 -0.7742 1.2223 5 6 3.3195 -1.5156 0.7078 6 1 4.2048 -1.1873 1.2524 7 7 3.1457 -2.9637 0.8464 8 6 4.2247 -3.7679 0.9195 9 8 5.3417 -3.2919 0.8708 10 8 4.0650 -5.0988 1.0464 11 6 5.2714 -5.9035 1.1197 12 6 6.0998 -5.4715 2.3313 13 6 4.8925 -7.3791 1.2603 14 6 6.0933 -5.7078 -0.1559 15 6 3.4321 -1.1265 -0.7819 16 7 2.0506 -0.7459 -1.1746 17 6 2.0591 0.1014 -2.3747 18 6 2.8131 -0.5968 -3.4771 19 8 3.2952 -1.6925 -3.2824 20 7 2.9505 -0.0040 -4.6797 21 6 3.6838 -0.6825 -5.7511 22 6 3.6926 0.1866 -6.9823 23 1 3.2014 1.1483 -6.9679 24 6 4.3276 -0.2460 -8.1271 25 7 4.9254 -1.4174 -8.1448 26 14 4.3390 0.8316 -9.6529 27 1 5.0016 2.1236 -9.3415 28 1 5.0823 0.1438 -10.7391 29 1 2.9427 1.0843 -10.0909 30 1 -0.3633 0.4999 0.8979 31 1 -0.3633 0.5278 -0.8818 32 1 -0.3633 -1.0275 -0.0161 33 1 1.3244 -1.4877 1.5762 34 1 2.3393 -0.0833 2.0206 35 1 2.2541 -3.3436 0.8854 36 1 5.5144 -5.6109 3.2401 37 1 7.0057 -6.0752 2.3861 38 1 6.3698 -4.4203 2.2307 39 1 4.3025 -7.6865 0.3969 40 1 5.7982 -7.9832 1.3149 41 1 4.3068 -7.5188 2.1689 42 1 6.3632 -4.6565 -0.2565 43 1 6.9991 -6.3115 -0.1008 44 1 5.5031 -6.0155 -1.0191 45 1 4.1092 -0.2811 -0.9039 46 1 3.7740 -1.9767 -1.3721 47 1 1.0343 0.2865 -2.6961 48 1 2.5452 1.0499 -2.1463 49 1 2.5645 0.8721 -4.8355 50 1 4.7089 -0.8668 -5.4297 51 1 3.1984 -1.6314 -5.9793 52 1 5.3718 -1.7219 -8.9503 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000879221265.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:39:41 Heat of formation + Delta-G solvation = -115.279824 kcal Electronic energy + Delta-G solvation = -30985.754928 eV Core-core repulsion = 26792.367850 eV Total energy + Delta-G solvation = -4193.387078 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 341.215 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -40.83789 -39.80657 -38.30179 -37.01317 -34.66172 -34.18442 -33.87868 -32.34469 -31.85858 -30.26810 -27.88068 -27.53384 -27.41017 -26.07846 -25.21693 -23.09393 -22.32473 -20.75171 -20.59444 -19.87945 -19.62926 -18.19572 -17.14750 -16.70615 -16.36165 -15.95845 -15.82126 -15.35973 -15.20147 -14.91942 -14.59286 -14.48344 -14.39098 -13.97978 -13.65073 -13.38913 -13.34178 -12.82433 -12.67369 -12.50188 -12.39435 -12.22811 -12.03075 -12.00757 -11.98739 -11.92420 -11.74056 -11.69651 -11.44912 -11.37914 -11.28223 -11.09255 -10.99658 -10.89833 -10.78489 -10.39411 -10.29663 -10.00339 -9.40737 -9.18320 -8.91913 -8.72561 -8.38790 -7.85662 -6.15950 -4.23140 2.17318 2.90708 3.25226 3.29968 3.31470 3.37389 3.71433 4.10350 4.19151 4.35027 4.45967 4.56353 4.62730 4.67121 4.81826 4.86580 5.09814 5.19865 5.23454 5.25518 5.33770 5.35437 5.40460 5.43844 5.50114 5.55683 5.56081 5.59276 5.63378 5.66903 5.72337 5.76437 5.80643 5.85216 5.88340 6.09897 6.15478 6.26754 6.38730 6.44094 6.57885 6.88091 6.96521 7.32659 7.45724 7.46476 7.52914 7.67385 7.97848 8.43747 8.63178 8.78985 9.12314 9.43496 10.94202 Molecular weight = 341.21amu Principal moments of inertia in cm(-1) A = 0.009917 B = 0.002717 C = 0.002213 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2822.615730 B =10303.334106 C =12650.793612 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C 0.053 3.947 3 H 0.055 0.945 4 C -0.125 4.125 5 C 0.158 3.842 6 H 0.097 0.903 7 N -0.695 5.695 8 C 0.652 3.348 9 O -0.568 6.568 10 O -0.366 6.366 11 C 0.137 3.863 12 C -0.182 4.182 13 C -0.140 4.140 14 C -0.185 4.185 15 C 0.019 3.981 16 N -0.486 5.486 17 C 0.024 3.976 18 C 0.497 3.503 19 O -0.539 6.539 20 N -0.714 5.714 21 C 0.252 3.748 22 C -0.544 4.544 23 H 0.062 0.938 24 C 0.064 3.936 25 N -0.885 5.885 26 Si 0.904 3.096 27 H -0.275 1.275 28 H -0.285 1.285 29 H -0.275 1.275 30 H 0.057 0.943 31 H 0.056 0.944 32 H 0.065 0.935 33 H 0.083 0.917 34 H 0.081 0.919 35 H 0.406 0.594 36 H 0.057 0.943 37 H 0.068 0.932 38 H 0.088 0.912 39 H 0.067 0.933 40 H 0.079 0.921 41 H 0.064 0.936 42 H 0.089 0.911 43 H 0.068 0.932 44 H 0.063 0.937 45 H 0.048 0.952 46 H 0.121 0.879 47 H 0.101 0.899 48 H 0.059 0.941 49 H 0.389 0.611 50 H 0.026 0.974 51 H 0.026 0.974 52 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.791 -2.502 23.603 24.432 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.056 4.056 3 H 0.073 0.927 4 C -0.163 4.163 5 C 0.054 3.946 6 H 0.115 0.885 7 N -0.353 5.353 8 C 0.405 3.595 9 O -0.457 6.457 10 O -0.281 6.281 11 C 0.100 3.900 12 C -0.239 4.239 13 C -0.197 4.197 14 C -0.243 4.243 15 C -0.109 4.109 16 N -0.210 5.210 17 C -0.107 4.107 18 C 0.281 3.719 19 O -0.418 6.418 20 N -0.363 5.363 21 C 0.131 3.869 22 C -0.583 4.583 23 H 0.080 0.920 24 C -0.140 4.140 25 N -0.522 5.522 26 Si 0.731 3.269 27 H -0.201 1.201 28 H -0.211 1.211 29 H -0.201 1.201 30 H 0.076 0.924 31 H 0.075 0.925 32 H 0.084 0.916 33 H 0.101 0.899 34 H 0.100 0.900 35 H 0.241 0.759 36 H 0.076 0.924 37 H 0.087 0.913 38 H 0.106 0.894 39 H 0.087 0.913 40 H 0.098 0.902 41 H 0.083 0.917 42 H 0.108 0.892 43 H 0.087 0.913 44 H 0.082 0.918 45 H 0.066 0.934 46 H 0.138 0.862 47 H 0.119 0.881 48 H 0.077 0.923 49 H 0.222 0.778 50 H 0.043 0.957 51 H 0.044 0.956 52 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -5.041 -3.738 23.433 24.259 hybrid contribution 0.015 1.583 -0.984 1.864 sum -5.025 -2.156 22.449 23.105 Atomic orbital electron populations 1.21711 0.93496 1.02692 1.01443 1.22763 0.96471 0.95964 0.90368 0.92697 1.22692 0.96787 0.99357 0.97467 1.21701 0.98803 0.77507 0.96621 0.88502 1.44747 1.07540 1.06026 1.77031 1.18080 0.84736 0.80748 0.75932 1.90901 1.23301 1.75841 1.55700 1.86287 1.38391 1.17260 1.86153 1.22043 0.81995 0.89439 0.96506 1.22507 0.99956 1.04845 0.96599 1.21855 1.02655 0.92063 1.03177 1.22526 0.99994 1.05455 0.96278 1.23840 0.89342 1.02975 0.94765 1.65317 1.19076 1.35457 1.01187 1.22256 1.01877 0.95089 0.91527 1.20277 0.81194 0.86623 0.83823 1.90616 1.49311 1.20478 1.81353 1.46438 1.55617 1.21678 1.12518 1.19071 0.91619 0.93085 0.83084 1.21188 1.36496 1.04060 0.96512 0.91988 1.24955 0.94859 0.95237 0.98960 1.69968 1.34468 1.18771 1.29025 0.86476 0.78265 0.80258 0.81909 1.20089 1.21056 1.20056 0.92362 0.92499 0.91638 0.89883 0.90015 0.75892 0.92424 0.91260 0.89362 0.91346 0.90232 0.91679 0.89186 0.91298 0.91837 0.93413 0.86159 0.88125 0.92265 0.77825 0.95652 0.95559 0.92386 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.11 9.34 37.16 0.35 -0.76 16 2 C 0.05 0.51 2.88 -66.07 -0.19 0.32 16 3 H 0.06 0.50 7.82 -51.93 -0.41 0.09 16 4 C -0.12 -1.05 6.31 -25.35 -0.16 -1.21 16 5 C 0.16 1.84 3.38 -66.55 -0.22 1.62 16 6 H 0.10 1.16 7.60 -51.93 -0.39 0.77 16 7 N -0.69 -8.42 5.09 -57.37 -0.29 -8.71 16 8 C 0.65 9.38 8.06 54.05 0.44 9.81 16 9 O -0.57 -9.41 11.56 -19.28 -0.22 -9.63 16 10 O -0.37 -4.88 9.94 -40.33 -0.40 -5.28 16 11 C 0.14 1.57 1.13 -90.62 -0.10 1.47 16 12 C -0.18 -1.90 8.37 37.16 0.31 -1.59 16 13 C -0.14 -1.21 8.85 37.16 0.33 -0.88 16 14 C -0.19 -2.35 8.37 37.16 0.31 -2.04 16 15 C 0.02 0.29 5.03 -2.17 -0.01 0.28 16 16 N -0.49 -6.57 5.02 -223.54 -1.12 -7.70 16 17 C 0.02 0.34 5.40 -4.97 -0.03 0.32 16 18 C 0.50 9.86 7.54 -10.98 -0.08 9.78 16 19 O -0.54 -12.89 13.67 5.56 0.08 -12.81 16 20 N -0.71 -15.01 5.55 -61.47 -0.34 -15.35 16 21 C 0.25 6.74 5.43 -5.20 -0.03 6.71 16 22 C -0.54 -14.85 9.28 -34.44 -0.32 -15.17 16 23 H 0.06 1.57 7.60 -52.49 -0.40 1.17 16 24 C 0.06 1.78 5.46 -17.82 -0.10 1.68 16 25 N -0.89 -26.33 13.29 55.43 0.74 -25.59 16 26 Si 0.90 20.96 29.54 -169.99 -5.02 15.94 16 27 H -0.28 -6.25 7.11 56.52 0.40 -5.84 16 28 H -0.29 -6.58 7.11 56.52 0.40 -6.18 16 29 H -0.28 -6.23 7.11 56.52 0.40 -5.83 16 30 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 31 H 0.06 0.48 7.76 -51.93 -0.40 0.07 16 32 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 33 H 0.08 0.62 7.37 -51.93 -0.38 0.23 16 34 H 0.08 0.54 8.14 -51.93 -0.42 0.12 16 35 H 0.41 4.19 8.44 -40.82 -0.34 3.85 16 36 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 37 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 38 H 0.09 1.13 5.88 -51.93 -0.31 0.82 16 39 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 40 H 0.08 0.54 8.14 -51.93 -0.42 0.12 16 41 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 42 H 0.09 1.39 5.88 -51.93 -0.31 1.08 16 43 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 44 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 45 H 0.05 0.73 8.00 -51.93 -0.42 0.31 16 46 H 0.12 2.36 5.97 -51.93 -0.31 2.05 16 47 H 0.10 1.23 7.78 -51.93 -0.40 0.83 16 48 H 0.06 0.73 7.88 -51.93 -0.41 0.32 16 49 H 0.39 6.96 8.32 -40.82 -0.34 6.62 16 50 H 0.03 0.75 8.14 -51.93 -0.42 0.33 16 51 H 0.03 0.78 8.14 -51.93 -0.42 0.36 16 52 H 0.27 7.45 8.31 -40.82 -0.34 7.11 16 LS Contribution 412.09 15.07 6.21 6.21 Total: -1.00 -33.90 412.09 -8.91 -42.82 By element: Atomic # 1 Polarization: 18.78 SS G_CDS: -9.03 Total: 9.76 kcal Atomic # 6 Polarization: 9.86 SS G_CDS: 0.49 Total: 10.35 kcal Atomic # 7 Polarization: -56.33 SS G_CDS: -1.02 Total: -57.35 kcal Atomic # 8 Polarization: -27.18 SS G_CDS: -0.55 Total: -27.72 kcal Atomic # 14 Polarization: 20.96 SS G_CDS: -5.02 Total: 15.94 kcal Total LS contribution 6.21 Total: 6.21 kcal Total: -33.90 -8.91 -42.82 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000879221265.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -72.463 kcal (2) G-P(sol) polarization free energy of solvation -33.904 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -106.367 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.912 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.817 kcal (6) G-S(sol) free energy of system = (1) + (5) -115.280 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds