Wall clock time and date at job start Wed Apr 1 2020 00:39:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08997 * 110.36488 * 2 1 4 4 C 1.54380 * 110.41130 * 122.35016 * 2 1 3 5 5 C 1.54259 * 105.05727 * 142.75032 * 4 2 1 6 6 H 1.09002 * 110.32223 * 118.89718 * 5 4 2 7 7 N 1.46502 * 110.32097 * 240.99980 * 5 4 2 8 8 C 1.34775 * 120.00001 * 203.56879 * 7 5 4 9 9 O 1.21516 * 119.99788 * 0.02562 * 8 7 5 10 10 O 1.34642 * 120.00000 * 180.02562 * 8 7 5 11 11 C 1.45197 * 116.99927 * 180.02562 * 10 8 7 12 12 C 1.53003 * 109.47327 * 59.99932 * 11 10 8 13 13 C 1.52996 * 109.47470 * 180.02562 * 11 10 8 14 14 C 1.53006 * 109.47186 * 300.00210 * 11 10 8 15 15 C 1.54378 * 105.06267 * 0.02562 * 5 4 2 16 16 N 1.48559 * 110.51071 * 237.58349 * 2 1 3 17 17 C 1.46908 * 110.99826 * 82.13027 * 16 2 1 18 18 C 1.50706 * 109.46589 * 169.99901 * 17 16 2 19 19 O 1.21278 * 120.00179 * 0.02562 * 18 17 16 20 20 N 1.34783 * 119.99645 * 179.97438 * 18 17 16 21 21 C 1.46491 * 119.99677 * 179.97438 * 20 18 17 22 22 C 1.50704 * 109.47018 * 180.02562 * 21 20 18 23 23 H 1.07996 * 119.99713 * 0.02562 * 22 21 20 24 24 C 1.37880 * 120.00325 * 180.02562 * 22 21 20 25 25 N 1.31516 * 119.99583 * 0.02562 * 24 22 21 26 26 Si 1.86798 * 120.00060 * 180.02562 * 24 22 21 27 27 H 1.48497 * 109.47344 * 59.99835 * 26 24 22 28 28 H 1.48503 * 109.47026 * 179.97438 * 26 24 22 29 29 H 1.48504 * 109.47047 * 299.99905 * 26 24 22 30 30 H 1.09003 * 109.47155 * 299.10508 * 1 2 3 31 31 H 1.09003 * 109.46726 * 59.09995 * 1 2 3 32 32 H 1.08996 * 109.47007 * 179.10332 * 1 2 3 33 33 H 1.08994 * 110.32234 * 23.85513 * 4 2 1 34 34 H 1.08997 * 110.40745 * 261.69257 * 4 2 1 35 35 H 0.96998 * 119.99803 * 23.58247 * 7 5 4 36 36 H 1.08994 * 109.47051 * 60.00172 * 12 11 10 37 37 H 1.08997 * 109.47323 * 180.02562 * 12 11 10 38 38 H 1.08998 * 109.47044 * 299.99949 * 12 11 10 39 39 H 1.09000 * 109.46865 * 59.99382 * 13 11 10 40 40 H 1.08997 * 109.47300 * 179.97438 * 13 11 10 41 41 H 1.09001 * 109.46698 * 300.00433 * 13 11 10 42 42 H 1.09002 * 109.46942 * 59.99763 * 14 11 10 43 43 H 1.08997 * 109.47360 * 179.97438 * 14 11 10 44 44 H 1.09000 * 109.46788 * 300.00397 * 14 11 10 45 45 H 1.08990 * 110.41475 * 94.92702 * 15 5 4 46 46 H 1.09004 * 110.41072 * 217.36977 * 15 5 4 47 47 H 1.08992 * 109.47146 * 289.99854 * 17 16 2 48 48 H 1.08994 * 109.47074 * 50.00284 * 17 16 2 49 49 H 0.97000 * 119.99538 * 0.02562 * 20 18 17 50 50 H 1.08997 * 109.47928 * 300.00210 * 21 20 18 51 51 H 1.08998 * 109.47398 * 60.00524 * 21 20 18 52 52 H 0.96996 * 119.99646 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9094 1.0218 0.0000 4 6 2.0685 -0.7742 1.2223 5 6 3.3195 -1.5156 0.7078 6 1 4.2048 -1.1873 1.2524 7 7 3.1457 -2.9637 0.8464 8 6 4.2247 -3.7679 0.9195 9 8 5.3417 -3.2919 0.8708 10 8 4.0650 -5.0988 1.0464 11 6 5.2714 -5.9035 1.1197 12 6 6.0998 -5.4715 2.3313 13 6 4.8925 -7.3791 1.2603 14 6 6.0933 -5.7078 -0.1559 15 6 3.4321 -1.1265 -0.7819 16 7 2.0506 -0.7459 -1.1746 17 6 2.0591 0.1014 -2.3747 18 6 2.8131 -0.5968 -3.4771 19 8 3.2952 -1.6925 -3.2824 20 7 2.9505 -0.0040 -4.6797 21 6 3.6838 -0.6825 -5.7511 22 6 3.6926 0.1866 -6.9823 23 1 3.2014 1.1483 -6.9679 24 6 4.3276 -0.2460 -8.1271 25 7 4.9254 -1.4174 -8.1448 26 14 4.3390 0.8316 -9.6529 27 1 5.0016 2.1236 -9.3415 28 1 5.0823 0.1438 -10.7391 29 1 2.9427 1.0843 -10.0909 30 1 -0.3633 0.4999 0.8979 31 1 -0.3633 0.5278 -0.8818 32 1 -0.3633 -1.0275 -0.0161 33 1 1.3244 -1.4877 1.5762 34 1 2.3393 -0.0833 2.0206 35 1 2.2541 -3.3436 0.8854 36 1 5.5144 -5.6109 3.2401 37 1 7.0057 -6.0752 2.3861 38 1 6.3698 -4.4203 2.2307 39 1 4.3025 -7.6865 0.3969 40 1 5.7982 -7.9832 1.3149 41 1 4.3068 -7.5188 2.1689 42 1 6.3632 -4.6565 -0.2565 43 1 6.9991 -6.3115 -0.1008 44 1 5.5031 -6.0155 -1.0191 45 1 4.1092 -0.2811 -0.9039 46 1 3.7740 -1.9767 -1.3721 47 1 1.0343 0.2865 -2.6961 48 1 2.5452 1.0499 -2.1463 49 1 2.5645 0.8721 -4.8355 50 1 4.7089 -0.8668 -5.4297 51 1 3.1984 -1.6314 -5.9793 52 1 5.3718 -1.7219 -8.9503 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000879221265.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:39:38 Heat of formation + Delta-G solvation = -142.619583 kcal Electronic energy + Delta-G solvation = -30986.940469 eV Core-core repulsion = 26792.367850 eV Total energy + Delta-G solvation = -4194.572619 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 341.215 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -41.90356 -41.05545 -39.69645 -38.08009 -36.17918 -35.72652 -34.85068 -34.37321 -32.84390 -31.25587 -29.68783 -28.38610 -28.30032 -27.42430 -26.22734 -24.58420 -23.87563 -21.84519 -21.53580 -21.30544 -20.80213 -19.23691 -18.91697 -17.87349 -17.47644 -17.37544 -17.15043 -16.74361 -16.56031 -16.43366 -15.87709 -15.70139 -15.40976 -15.31515 -14.90186 -14.49095 -14.46104 -14.11488 -14.03734 -13.85950 -13.41315 -13.30818 -13.21082 -13.08451 -13.00168 -12.90965 -12.89142 -12.85995 -12.70175 -12.60728 -12.45119 -12.40994 -12.29678 -12.21067 -11.88540 -11.64473 -11.53010 -11.39316 -11.10238 -10.81232 -10.61118 -10.18883 -9.84718 -9.44630 -8.31114 -6.48498 1.18912 1.40981 1.45574 1.53801 1.76298 1.78495 2.26478 2.46662 3.02992 3.03610 3.17021 3.56605 3.62208 3.74451 3.79086 3.93845 3.96845 4.10786 4.22009 4.27647 4.33071 4.47966 4.48830 4.55391 4.58460 4.60706 4.74607 4.76865 4.82978 4.86820 4.89345 4.90592 5.03362 5.05054 5.08915 5.12675 5.20606 5.21977 5.26639 5.30032 5.40172 5.47043 5.48753 5.61080 5.67833 5.81436 5.82965 6.02203 6.43362 6.62761 6.91421 7.21437 7.36801 7.51248 8.81038 Molecular weight = 341.21amu Principal moments of inertia in cm(-1) A = 0.009917 B = 0.002717 C = 0.002213 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2822.615730 B =10303.334106 C =12650.793612 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C 0.053 3.947 3 H 0.070 0.930 4 C -0.112 4.112 5 C 0.161 3.839 6 H 0.092 0.908 7 N -0.686 5.686 8 C 0.643 3.357 9 O -0.596 6.596 10 O -0.371 6.371 11 C 0.125 3.875 12 C -0.175 4.175 13 C -0.134 4.134 14 C -0.183 4.183 15 C 0.022 3.978 16 N -0.500 5.500 17 C 0.038 3.962 18 C 0.489 3.511 19 O -0.586 6.586 20 N -0.709 5.709 21 C 0.271 3.729 22 C -0.557 4.557 23 H 0.085 0.915 24 C 0.002 3.998 25 N -0.932 5.932 26 Si 0.987 3.013 27 H -0.261 1.261 28 H -0.286 1.286 29 H -0.260 1.260 30 H 0.083 0.917 31 H 0.056 0.944 32 H 0.057 0.943 33 H 0.099 0.901 34 H 0.111 0.889 35 H 0.415 0.585 36 H 0.070 0.930 37 H 0.090 0.910 38 H 0.060 0.940 39 H 0.062 0.938 40 H 0.102 0.898 41 H 0.077 0.923 42 H 0.055 0.945 43 H 0.093 0.907 44 H 0.048 0.952 45 H 0.038 0.962 46 H 0.066 0.934 47 H 0.130 0.870 48 H 0.088 0.912 49 H 0.408 0.592 50 H -0.019 1.019 51 H -0.016 1.016 52 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.849 -0.554 25.117 26.321 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.054 4.054 3 H 0.088 0.912 4 C -0.150 4.150 5 C 0.057 3.943 6 H 0.110 0.890 7 N -0.345 5.345 8 C 0.397 3.603 9 O -0.487 6.487 10 O -0.285 6.285 11 C 0.089 3.911 12 C -0.232 4.232 13 C -0.191 4.191 14 C -0.241 4.241 15 C -0.107 4.107 16 N -0.226 5.226 17 C -0.093 4.093 18 C 0.277 3.723 19 O -0.467 6.467 20 N -0.360 5.360 21 C 0.148 3.852 22 C -0.595 4.595 23 H 0.103 0.897 24 C -0.198 4.198 25 N -0.571 5.571 26 Si 0.809 3.191 27 H -0.186 1.186 28 H -0.211 1.211 29 H -0.184 1.184 30 H 0.102 0.898 31 H 0.075 0.925 32 H 0.076 0.924 33 H 0.117 0.883 34 H 0.129 0.871 35 H 0.252 0.748 36 H 0.089 0.911 37 H 0.109 0.891 38 H 0.079 0.921 39 H 0.081 0.919 40 H 0.121 0.879 41 H 0.096 0.904 42 H 0.074 0.926 43 H 0.111 0.889 44 H 0.067 0.933 45 H 0.056 0.944 46 H 0.084 0.916 47 H 0.148 0.852 48 H 0.105 0.895 49 H 0.244 0.756 50 H -0.001 1.001 51 H 0.002 0.998 52 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -7.160 -1.753 24.986 26.051 hybrid contribution 0.689 0.904 -1.422 1.821 sum -6.471 -0.849 23.564 24.451 Atomic orbital electron populations 1.21714 0.91872 1.02601 1.02768 1.22929 0.97556 0.96304 0.88632 0.91159 1.22726 0.95047 0.99596 0.97615 1.21720 1.00768 0.77460 0.94374 0.88995 1.44784 1.07469 1.06199 1.76073 1.18374 0.84885 0.81235 0.75813 1.90887 1.24518 1.76381 1.56949 1.86297 1.39494 1.16782 1.85962 1.22393 0.81645 0.90963 0.96086 1.22433 1.00858 1.03419 0.96483 1.21878 1.03931 0.89778 1.03547 1.22498 1.01191 1.03567 0.96819 1.23575 0.90203 1.00611 0.96300 1.65296 1.17913 1.36884 1.02475 1.22205 1.02451 0.95076 0.89527 1.21436 0.80387 0.86157 0.84364 1.90629 1.51009 1.22900 1.82119 1.46173 1.55488 1.22348 1.11984 1.18457 0.89427 0.92245 0.85102 1.21598 1.36555 1.04805 0.96502 0.89656 1.26117 0.94027 0.96624 1.02992 1.70147 1.35558 1.21164 1.30223 0.85184 0.78981 0.78200 0.76717 1.18591 1.21131 1.18443 0.89785 0.92503 0.92412 0.88303 0.87112 0.74813 0.91147 0.89137 0.92101 0.91905 0.87898 0.90375 0.92588 0.88871 0.93260 0.94404 0.91606 0.85184 0.89462 0.75590 1.00070 0.99833 0.92261 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.65 9.34 71.98 0.67 -0.97 16 2 C 0.05 0.86 2.88 45.06 0.13 0.99 16 3 H 0.07 0.98 7.82 -2.39 -0.02 0.96 16 4 C -0.11 -1.56 6.31 31.49 0.20 -1.36 16 5 C 0.16 3.74 3.38 45.89 0.16 3.90 16 6 H 0.09 2.23 7.60 -2.39 -0.02 2.21 16 7 N -0.69 -17.02 5.09 -565.83 -2.88 -19.90 16 8 C 0.64 19.55 8.06 129.79 1.05 20.59 16 9 O -0.60 -21.28 11.56 19.79 0.23 -21.05 16 10 O -0.37 -10.23 9.94 -55.51 -0.55 -10.78 16 11 C 0.13 2.91 1.13 -10.79 -0.01 2.90 16 12 C -0.17 -3.60 8.37 71.98 0.60 -2.99 16 13 C -0.13 -2.14 8.85 71.98 0.64 -1.51 16 14 C -0.18 -4.96 8.37 71.98 0.60 -4.35 16 15 C 0.02 0.70 5.03 86.44 0.44 1.13 16 16 N -0.50 -13.09 5.02 -861.16 -4.32 -17.42 16 17 C 0.04 1.03 5.40 85.56 0.46 1.49 16 18 C 0.49 20.08 7.54 87.66 0.66 20.74 16 19 O -0.59 -30.11 13.67 -3.02 -0.04 -30.15 16 20 N -0.71 -30.62 5.55 -466.79 -2.59 -33.21 16 21 C 0.27 15.33 5.43 85.64 0.46 15.80 16 22 C -0.56 -30.86 9.28 25.60 0.24 -30.62 16 23 H 0.09 4.22 7.60 -2.91 -0.02 4.20 16 24 C 0.00 0.11 5.46 84.66 0.46 0.57 16 25 N -0.93 -57.62 13.29 21.45 0.28 -57.33 16 26 Si 0.99 42.87 29.54 68.60 2.03 44.89 16 27 H -0.26 -10.72 7.11 99.48 0.71 -10.01 16 28 H -0.29 -12.35 7.11 99.48 0.71 -11.65 16 29 H -0.26 -10.62 7.11 99.48 0.71 -9.91 16 30 H 0.08 0.66 8.14 -2.39 -0.02 0.64 16 31 H 0.06 0.73 7.76 -2.39 -0.02 0.71 16 32 H 0.06 0.83 8.14 -2.39 -0.02 0.81 16 33 H 0.10 1.12 7.37 -2.39 -0.02 1.10 16 34 H 0.11 1.00 8.14 -2.39 -0.02 0.98 16 35 H 0.41 8.50 8.44 -92.71 -0.78 7.72 16 36 H 0.07 1.25 8.14 -2.39 -0.02 1.23 16 37 H 0.09 1.43 8.14 -2.39 -0.02 1.42 16 38 H 0.06 1.62 5.88 -2.39 -0.01 1.60 16 39 H 0.06 1.08 8.14 -2.39 -0.02 1.06 16 40 H 0.10 1.16 8.14 -2.39 -0.02 1.14 16 41 H 0.08 1.06 8.14 -2.39 -0.02 1.04 16 42 H 0.06 1.90 5.88 -2.39 -0.01 1.89 16 43 H 0.09 1.97 8.14 -2.39 -0.02 1.95 16 44 H 0.05 1.42 8.14 -2.39 -0.02 1.40 16 45 H 0.04 1.21 8.00 -2.39 -0.02 1.19 16 46 H 0.07 2.82 5.97 -2.38 -0.01 2.81 16 47 H 0.13 2.79 7.78 -2.39 -0.02 2.77 16 48 H 0.09 1.91 7.88 -2.39 -0.02 1.89 16 49 H 0.41 14.29 8.32 -92.71 -0.77 13.52 16 50 H -0.02 -1.20 8.14 -2.39 -0.02 -1.22 16 51 H -0.02 -1.04 8.14 -2.39 -0.02 -1.06 16 52 H 0.27 15.52 8.31 -92.71 -0.77 14.75 16 Total: -1.00 -81.80 412.09 -1.72 -83.52 By element: Atomic # 1 Polarization: 35.75 SS G_CDS: -0.63 Total: 35.12 kcal Atomic # 6 Polarization: 19.55 SS G_CDS: 6.76 Total: 26.30 kcal Atomic # 7 Polarization: -118.35 SS G_CDS: -9.51 Total: -127.86 kcal Atomic # 8 Polarization: -61.61 SS G_CDS: -0.36 Total: -61.98 kcal Atomic # 14 Polarization: 42.87 SS G_CDS: 2.03 Total: 44.89 kcal Total: -81.80 -1.72 -83.52 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000879221265.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -59.100 kcal (2) G-P(sol) polarization free energy of solvation -81.799 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -140.898 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.721 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.520 kcal (6) G-S(sol) free energy of system = (1) + (5) -142.620 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds