Wall clock time and date at job start Wed Apr 1 2020 00:39:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.09000 * 110.05908 * 2 1 4 4 C 1.53995 * 109.91550 * 121.20287 * 2 1 3 5 5 C 1.54595 * 105.13472 * 120.58217 * 4 2 1 6 6 H 1.09005 * 110.72113 * 263.41446 * 5 4 2 7 7 N 1.46509 * 110.72112 * 140.31508 * 5 4 2 8 8 C 1.34784 * 119.99753 * 154.99750 * 7 5 4 9 9 O 1.21505 * 119.99890 * 0.02562 * 8 7 5 10 10 O 1.34631 * 119.99668 * 179.97438 * 8 7 5 11 11 C 1.45203 * 116.99978 * 179.97438 * 10 8 7 12 12 C 1.53001 * 109.46536 * 60.00191 * 11 10 8 13 13 C 1.52996 * 109.47116 * 180.02562 * 11 10 8 14 14 C 1.52998 * 109.47206 * 300.00308 * 11 10 8 15 15 C 1.54932 * 102.92359 * 21.95777 * 5 4 2 16 16 N 1.47899 * 109.92016 * 238.79626 * 2 1 3 17 17 C 1.46900 * 111.00120 * 94.79889 * 16 2 1 18 18 C 1.50692 * 109.47199 * 169.99914 * 17 16 2 19 19 O 1.21282 * 120.00217 * 0.02562 * 18 17 16 20 20 N 1.34777 * 120.00138 * 180.02562 * 18 17 16 21 21 C 1.46497 * 120.00075 * 180.02562 * 20 18 17 22 22 C 1.50708 * 109.47141 * 179.97438 * 21 20 18 23 23 H 1.07991 * 119.99789 * 0.02562 * 22 21 20 24 24 C 1.37877 * 120.00008 * 179.97438 * 22 21 20 25 25 N 1.31514 * 120.00089 * 180.02562 * 24 22 21 26 26 Si 1.86798 * 119.99938 * 0.02562 * 24 22 21 27 27 H 1.48506 * 109.47297 * 269.99556 * 26 24 22 28 28 H 1.48503 * 109.47261 * 149.99737 * 26 24 22 29 29 H 1.48500 * 109.47454 * 29.99730 * 26 24 22 30 30 H 1.09002 * 109.46701 * 181.20580 * 1 2 3 31 31 H 1.09001 * 109.47137 * 301.20151 * 1 2 3 32 32 H 1.08996 * 109.47003 * 61.20886 * 1 2 3 33 33 H 1.08999 * 110.30545 * 239.49563 * 4 2 1 34 34 H 1.08998 * 110.30940 * 1.57002 * 4 2 1 35 35 H 0.96999 * 120.00033 * 334.99950 * 7 5 4 36 36 H 1.09001 * 109.47238 * 60.00406 * 12 11 10 37 37 H 1.09008 * 109.46525 * 180.02562 * 12 11 10 38 38 H 1.08998 * 109.47556 * 299.99797 * 12 11 10 39 39 H 1.08994 * 109.47232 * 60.00117 * 13 11 10 40 40 H 1.09001 * 109.47234 * 180.02562 * 13 11 10 41 41 H 1.09001 * 109.47313 * 299.99995 * 13 11 10 42 42 H 1.09006 * 109.47391 * 59.99449 * 14 11 10 43 43 H 1.08996 * 109.47225 * 179.97438 * 14 11 10 44 44 H 1.09004 * 109.47100 * 299.99938 * 14 11 10 45 45 H 1.09004 * 110.66627 * 204.15175 * 15 5 4 46 46 H 1.08996 * 110.66931 * 81.02226 * 15 5 4 47 47 H 1.09007 * 109.46678 * 49.99893 * 17 16 2 48 48 H 1.09000 * 109.47233 * 290.00384 * 17 16 2 49 49 H 0.97000 * 120.00165 * 359.97438 * 20 18 17 50 50 H 1.08994 * 109.47995 * 59.99644 * 21 20 18 51 51 H 1.09000 * 109.47072 * 299.99601 * 21 20 18 52 52 H 0.96997 * 119.99848 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.9039 1.0239 0.0000 4 6 2.0546 -0.7501 1.2384 5 6 2.9060 -1.9116 0.6762 6 1 2.3224 -2.8312 0.6319 7 7 4.1148 -2.1052 1.4811 8 6 4.7204 -3.3090 1.5087 9 8 4.2641 -4.2335 0.8657 10 8 5.8314 -3.4867 2.2480 11 6 6.4300 -4.8095 2.2309 12 6 6.8272 -5.1710 0.7982 13 6 7.6729 -4.8184 3.1230 14 6 5.4201 -5.8330 2.7539 15 6 3.2682 -1.4183 -0.7471 16 7 2.0340 -0.7204 -1.1893 17 6 2.3212 0.2123 -2.2873 18 6 3.0562 -0.5140 -3.3841 19 8 3.3149 -1.6928 -3.2634 20 7 3.4261 0.1462 -4.4993 21 6 4.1401 -0.5600 -5.5659 22 6 4.4349 0.3969 -6.6922 23 1 4.1221 1.4280 -6.6205 24 6 5.1050 -0.0439 -7.8137 25 7 5.3627 0.7913 -8.7964 26 14 5.6467 -1.8273 -7.9374 27 1 7.0116 -1.9706 -7.3701 28 1 5.6569 -2.2439 -9.3628 29 1 4.7023 -2.6854 -7.1777 30 1 -0.3633 -1.0275 0.0216 31 1 -0.3633 0.5324 0.8790 32 1 -0.3633 0.4949 -0.9006 33 1 2.6713 -0.0894 1.8477 34 1 1.2228 -1.1386 1.8259 35 1 4.4792 -1.3670 1.9941 36 1 7.5466 -4.4418 0.4257 37 1 7.2761 -6.1642 0.7854 38 1 5.9414 -5.1647 0.1630 39 1 7.3896 -4.5610 4.1435 40 1 8.1225 -5.8113 3.1098 41 1 8.3925 -4.0892 2.7508 42 1 4.5343 -5.8267 2.1187 43 1 5.8693 -6.8260 2.7406 44 1 5.1371 -5.5754 3.7745 45 1 3.4890 -2.2614 -1.4019 46 1 4.1098 -0.7266 -0.7120 47 1 2.9383 1.0308 -1.9165 48 1 1.3857 0.6114 -2.6792 49 1 3.2190 1.0889 -4.5961 50 1 3.5227 -1.3780 -5.9368 51 1 5.0755 -0.9597 -5.1741 52 1 5.8337 0.4811 -9.5856 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000879221266.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:39:56 Heat of formation + Delta-G solvation = -110.606371 kcal Electronic energy + Delta-G solvation = -30865.842191 eV Core-core repulsion = 26672.657769 eV Total energy + Delta-G solvation = -4193.184422 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 341.215 amu Computer time = 1.42 seconds Orbital eigenvalues (eV) -40.97159 -39.93869 -38.44981 -37.18640 -34.86295 -34.32322 -34.02622 -32.39402 -31.98874 -30.25676 -28.38880 -27.65232 -27.55340 -26.30682 -25.26234 -23.13173 -21.94885 -21.05163 -20.47361 -20.12857 -19.89402 -18.42384 -17.25764 -16.96125 -16.27627 -16.21522 -15.98695 -15.37638 -15.18211 -14.98237 -14.59337 -14.57960 -14.38079 -14.24518 -13.81212 -13.62468 -13.40281 -13.06109 -12.78546 -12.67365 -12.54930 -12.45218 -12.35273 -12.14088 -12.10903 -12.06938 -11.89542 -11.79522 -11.59764 -11.50224 -11.30768 -11.15914 -10.90159 -10.87031 -10.75026 -10.53794 -10.14828 -9.96377 -9.50159 -9.35486 -9.04642 -8.78142 -8.44233 -8.12451 -6.22052 -4.24336 1.98117 2.73732 3.20879 3.27445 3.33763 3.43329 3.57719 3.88949 4.26923 4.33660 4.39924 4.44531 4.49311 4.53951 4.68310 4.73879 5.06134 5.11297 5.13329 5.22221 5.25802 5.26949 5.30961 5.34252 5.35647 5.45131 5.46881 5.51337 5.55374 5.59690 5.66412 5.69219 5.75150 5.78491 5.83720 6.05915 6.10721 6.14213 6.26997 6.33109 6.41890 6.76796 6.83697 6.95503 7.07456 7.23730 7.26620 7.39414 8.13066 8.27251 8.50580 8.74694 8.94134 9.38305 10.89867 Molecular weight = 341.21amu Principal moments of inertia in cm(-1) A = 0.009058 B = 0.002904 C = 0.002291 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3090.593782 B = 9639.011090 C =12217.571534 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C 0.061 3.939 3 H 0.057 0.943 4 C -0.133 4.133 5 C 0.156 3.844 6 H 0.109 0.891 7 N -0.704 5.704 8 C 0.650 3.350 9 O -0.559 6.559 10 O -0.368 6.368 11 C 0.137 3.863 12 C -0.186 4.186 13 C -0.140 4.140 14 C -0.183 4.183 15 C 0.024 3.976 16 N -0.492 5.492 17 C 0.028 3.972 18 C 0.498 3.502 19 O -0.540 6.540 20 N -0.706 5.706 21 C 0.222 3.778 22 C -0.544 4.544 23 H 0.079 0.921 24 C 0.078 3.922 25 N -0.893 5.893 26 Si 0.876 3.124 27 H -0.273 1.273 28 H -0.283 1.283 29 H -0.260 1.260 30 H 0.064 0.936 31 H 0.056 0.944 32 H 0.057 0.943 33 H 0.074 0.926 34 H 0.084 0.916 35 H 0.403 0.597 36 H 0.060 0.940 37 H 0.070 0.930 38 H 0.090 0.910 39 H 0.065 0.935 40 H 0.080 0.920 41 H 0.066 0.934 42 H 0.088 0.912 43 H 0.070 0.930 44 H 0.058 0.942 45 H 0.123 0.877 46 H 0.042 0.958 47 H 0.061 0.939 48 H 0.104 0.896 49 H 0.396 0.604 50 H 0.026 0.974 51 H 0.019 0.981 52 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.959 -4.339 27.661 28.155 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.048 4.048 3 H 0.075 0.925 4 C -0.171 4.171 5 C 0.052 3.948 6 H 0.127 0.873 7 N -0.363 5.363 8 C 0.403 3.597 9 O -0.447 6.447 10 O -0.283 6.283 11 C 0.100 3.900 12 C -0.243 4.243 13 C -0.197 4.197 14 C -0.240 4.240 15 C -0.104 4.104 16 N -0.217 5.217 17 C -0.103 4.103 18 C 0.283 3.717 19 O -0.419 6.419 20 N -0.355 5.355 21 C 0.100 3.900 22 C -0.581 4.581 23 H 0.097 0.903 24 C -0.126 4.126 25 N -0.530 5.530 26 Si 0.703 3.297 27 H -0.199 1.199 28 H -0.209 1.209 29 H -0.184 1.184 30 H 0.083 0.917 31 H 0.075 0.925 32 H 0.076 0.924 33 H 0.092 0.908 34 H 0.102 0.898 35 H 0.238 0.762 36 H 0.080 0.920 37 H 0.089 0.911 38 H 0.109 0.891 39 H 0.084 0.916 40 H 0.099 0.901 41 H 0.086 0.914 42 H 0.107 0.893 43 H 0.089 0.911 44 H 0.077 0.923 45 H 0.141 0.859 46 H 0.060 0.940 47 H 0.079 0.921 48 H 0.122 0.878 49 H 0.229 0.771 50 H 0.044 0.956 51 H 0.037 0.963 52 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -3.231 -6.068 27.024 27.885 hybrid contribution 1.111 0.696 0.117 1.316 sum -2.119 -5.372 27.141 27.749 Atomic orbital electron populations 1.21766 0.93492 1.02652 1.01407 1.22446 0.96815 0.96221 0.89322 0.92534 1.22781 0.99970 0.96763 0.97601 1.21963 0.83482 0.99841 0.89545 0.87315 1.44743 1.29339 1.10490 1.51698 1.18092 0.79406 0.83794 0.78425 1.90939 1.66547 1.40743 1.46454 1.86279 1.39679 1.36828 1.65483 1.22067 0.92598 0.78449 0.96875 1.22536 1.03934 1.02023 0.95818 1.21859 0.95412 1.03104 0.99369 1.22516 1.01127 0.98493 1.01888 1.23926 0.90561 1.00724 0.95224 1.64567 1.27352 1.24801 1.04955 1.22249 1.01097 0.94375 0.92589 1.20329 0.80030 0.87810 0.83568 1.90612 1.56098 1.15790 1.79364 1.46154 1.57455 1.13804 1.18100 1.19475 0.91641 0.93619 0.85278 1.21090 1.38824 0.97561 1.00675 0.90271 1.24794 0.94811 0.97880 0.95126 1.69879 1.40526 1.35188 1.07399 0.86823 0.80003 0.85233 0.77684 1.19888 1.20866 1.18427 0.91681 0.92501 0.92354 0.90764 0.89759 0.76212 0.92047 0.91139 0.89095 0.91594 0.90135 0.91444 0.89280 0.91142 0.92322 0.85926 0.94014 0.92094 0.87813 0.77090 0.95638 0.96283 0.92256 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.13 9.32 37.16 0.35 -0.78 16 2 C 0.06 0.57 3.08 -66.64 -0.21 0.37 16 3 H 0.06 0.49 7.57 -51.93 -0.39 0.09 16 4 C -0.13 -1.08 6.31 -25.37 -0.16 -1.24 16 5 C 0.16 1.76 3.43 -66.07 -0.23 1.54 16 6 H 0.11 1.43 7.55 -51.93 -0.39 1.03 16 7 N -0.70 -7.44 5.18 -56.91 -0.29 -7.74 16 8 C 0.65 8.48 8.06 54.06 0.44 8.92 16 9 O -0.56 -8.84 11.53 -19.28 -0.22 -9.06 16 10 O -0.37 -4.31 9.94 -40.30 -0.40 -4.71 16 11 C 0.14 1.39 1.13 -90.62 -0.10 1.29 16 12 C -0.19 -2.06 8.37 37.16 0.31 -1.75 16 13 C -0.14 -1.02 8.85 37.16 0.33 -0.69 16 14 C -0.18 -1.75 8.37 37.16 0.31 -1.44 16 15 C 0.02 0.34 4.98 -1.90 -0.01 0.34 16 16 N -0.49 -6.50 4.89 -224.01 -1.10 -7.60 16 17 C 0.03 0.38 5.52 -4.98 -0.03 0.36 16 18 C 0.50 9.37 7.54 -10.99 -0.08 9.29 16 19 O -0.54 -12.17 13.52 5.56 0.08 -12.09 16 20 N -0.71 -14.17 5.55 -61.47 -0.34 -14.51 16 21 C 0.22 5.49 4.50 -5.19 -0.02 5.47 16 22 C -0.54 -14.94 9.83 -34.44 -0.34 -15.28 16 23 H 0.08 2.25 7.84 -52.49 -0.41 1.84 16 24 C 0.08 2.21 5.47 -17.82 -0.10 2.11 16 25 N -0.89 -26.59 13.96 55.43 0.77 -25.82 16 26 Si 0.88 21.70 27.47 -169.99 -4.67 17.03 16 27 H -0.27 -6.67 7.11 56.52 0.40 -6.27 16 28 H -0.28 -6.86 7.11 56.52 0.40 -6.46 16 29 H -0.26 -6.44 6.54 56.52 0.37 -6.07 16 30 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 31 H 0.06 0.37 8.14 -51.93 -0.42 -0.06 16 32 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 33 H 0.07 0.47 7.75 -51.93 -0.40 0.07 16 34 H 0.08 0.60 7.69 -51.93 -0.40 0.20 16 35 H 0.40 3.20 8.50 -40.82 -0.35 2.86 16 36 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 37 H 0.07 0.64 8.14 -51.92 -0.42 0.21 16 38 H 0.09 1.28 5.88 -51.93 -0.31 0.97 16 39 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 40 H 0.08 0.45 8.14 -51.93 -0.42 0.03 16 41 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 42 H 0.09 1.08 5.88 -51.93 -0.31 0.77 16 43 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 44 H 0.06 0.51 8.14 -51.93 -0.42 0.08 16 45 H 0.12 2.31 5.97 -51.93 -0.31 2.00 16 46 H 0.04 0.60 8.02 -51.93 -0.42 0.18 16 47 H 0.06 0.71 7.81 -51.93 -0.41 0.30 16 48 H 0.10 1.21 8.14 -51.93 -0.42 0.79 16 49 H 0.40 6.91 8.32 -40.82 -0.34 6.57 16 50 H 0.03 0.67 7.20 -51.93 -0.37 0.30 16 51 H 0.02 0.50 7.57 -51.93 -0.39 0.10 16 52 H 0.27 7.46 8.31 -40.82 -0.34 7.12 16 LS Contribution 408.95 15.07 6.16 6.16 Total: -1.00 -33.90 408.95 -8.56 -42.46 By element: Atomic # 1 Polarization: 16.41 SS G_CDS: -9.01 Total: 7.39 kcal Atomic # 6 Polarization: 8.02 SS G_CDS: 0.46 Total: 8.48 kcal Atomic # 7 Polarization: -54.70 SS G_CDS: -0.96 Total: -55.66 kcal Atomic # 8 Polarization: -25.31 SS G_CDS: -0.55 Total: -25.86 kcal Atomic # 14 Polarization: 21.70 SS G_CDS: -4.67 Total: 17.03 kcal Total LS contribution 6.16 Total: 6.16 kcal Total: -33.90 -8.56 -42.46 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000879221266.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -68.146 kcal (2) G-P(sol) polarization free energy of solvation -33.897 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -102.043 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.564 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.460 kcal (6) G-S(sol) free energy of system = (1) + (5) -110.606 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.42 seconds