Wall clock time and date at job start Wed Apr 1 2020 00:39:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.09000 * 110.05908 * 2 1 4 4 C 1.53995 * 109.91550 * 121.20287 * 2 1 3 5 5 C 1.54595 * 105.13472 * 120.58217 * 4 2 1 6 6 H 1.09005 * 110.72113 * 263.41446 * 5 4 2 7 7 N 1.46509 * 110.72112 * 140.31508 * 5 4 2 8 8 C 1.34784 * 119.99753 * 154.99750 * 7 5 4 9 9 O 1.21505 * 119.99890 * 0.02562 * 8 7 5 10 10 O 1.34631 * 119.99668 * 179.97438 * 8 7 5 11 11 C 1.45203 * 116.99978 * 179.97438 * 10 8 7 12 12 C 1.53001 * 109.46536 * 60.00191 * 11 10 8 13 13 C 1.52996 * 109.47116 * 180.02562 * 11 10 8 14 14 C 1.52998 * 109.47206 * 300.00308 * 11 10 8 15 15 C 1.54932 * 102.92359 * 21.95777 * 5 4 2 16 16 N 1.47899 * 109.92016 * 238.79626 * 2 1 3 17 17 C 1.46900 * 111.00120 * 94.79889 * 16 2 1 18 18 C 1.50692 * 109.47199 * 169.99914 * 17 16 2 19 19 O 1.21282 * 120.00217 * 0.02562 * 18 17 16 20 20 N 1.34777 * 120.00138 * 180.02562 * 18 17 16 21 21 C 1.46497 * 120.00075 * 180.02562 * 20 18 17 22 22 C 1.50708 * 109.47141 * 179.97438 * 21 20 18 23 23 H 1.07991 * 119.99789 * 0.02562 * 22 21 20 24 24 C 1.37877 * 120.00008 * 179.97438 * 22 21 20 25 25 N 1.31514 * 120.00089 * 180.02562 * 24 22 21 26 26 Si 1.86798 * 119.99938 * 0.02562 * 24 22 21 27 27 H 1.48506 * 109.47297 * 269.99556 * 26 24 22 28 28 H 1.48503 * 109.47261 * 149.99737 * 26 24 22 29 29 H 1.48500 * 109.47454 * 29.99730 * 26 24 22 30 30 H 1.09002 * 109.46701 * 181.20580 * 1 2 3 31 31 H 1.09001 * 109.47137 * 301.20151 * 1 2 3 32 32 H 1.08996 * 109.47003 * 61.20886 * 1 2 3 33 33 H 1.08999 * 110.30545 * 239.49563 * 4 2 1 34 34 H 1.08998 * 110.30940 * 1.57002 * 4 2 1 35 35 H 0.96999 * 120.00033 * 334.99950 * 7 5 4 36 36 H 1.09001 * 109.47238 * 60.00406 * 12 11 10 37 37 H 1.09008 * 109.46525 * 180.02562 * 12 11 10 38 38 H 1.08998 * 109.47556 * 299.99797 * 12 11 10 39 39 H 1.08994 * 109.47232 * 60.00117 * 13 11 10 40 40 H 1.09001 * 109.47234 * 180.02562 * 13 11 10 41 41 H 1.09001 * 109.47313 * 299.99995 * 13 11 10 42 42 H 1.09006 * 109.47391 * 59.99449 * 14 11 10 43 43 H 1.08996 * 109.47225 * 179.97438 * 14 11 10 44 44 H 1.09004 * 109.47100 * 299.99938 * 14 11 10 45 45 H 1.09004 * 110.66627 * 204.15175 * 15 5 4 46 46 H 1.08996 * 110.66931 * 81.02226 * 15 5 4 47 47 H 1.09007 * 109.46678 * 49.99893 * 17 16 2 48 48 H 1.09000 * 109.47233 * 290.00384 * 17 16 2 49 49 H 0.97000 * 120.00165 * 359.97438 * 20 18 17 50 50 H 1.08994 * 109.47995 * 59.99644 * 21 20 18 51 51 H 1.09000 * 109.47072 * 299.99601 * 21 20 18 52 52 H 0.96997 * 119.99848 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.9039 1.0239 0.0000 4 6 2.0546 -0.7501 1.2384 5 6 2.9060 -1.9116 0.6762 6 1 2.3224 -2.8312 0.6319 7 7 4.1148 -2.1052 1.4811 8 6 4.7204 -3.3090 1.5087 9 8 4.2641 -4.2335 0.8657 10 8 5.8314 -3.4867 2.2480 11 6 6.4300 -4.8095 2.2309 12 6 6.8272 -5.1710 0.7982 13 6 7.6729 -4.8184 3.1230 14 6 5.4201 -5.8330 2.7539 15 6 3.2682 -1.4183 -0.7471 16 7 2.0340 -0.7204 -1.1893 17 6 2.3212 0.2123 -2.2873 18 6 3.0562 -0.5140 -3.3841 19 8 3.3149 -1.6928 -3.2634 20 7 3.4261 0.1462 -4.4993 21 6 4.1401 -0.5600 -5.5659 22 6 4.4349 0.3969 -6.6922 23 1 4.1221 1.4280 -6.6205 24 6 5.1050 -0.0439 -7.8137 25 7 5.3627 0.7913 -8.7964 26 14 5.6467 -1.8273 -7.9374 27 1 7.0116 -1.9706 -7.3701 28 1 5.6569 -2.2439 -9.3628 29 1 4.7023 -2.6854 -7.1777 30 1 -0.3633 -1.0275 0.0216 31 1 -0.3633 0.5324 0.8790 32 1 -0.3633 0.4949 -0.9006 33 1 2.6713 -0.0894 1.8477 34 1 1.2228 -1.1386 1.8259 35 1 4.4792 -1.3670 1.9941 36 1 7.5466 -4.4418 0.4257 37 1 7.2761 -6.1642 0.7854 38 1 5.9414 -5.1647 0.1630 39 1 7.3896 -4.5610 4.1435 40 1 8.1225 -5.8113 3.1098 41 1 8.3925 -4.0892 2.7508 42 1 4.5343 -5.8267 2.1187 43 1 5.8693 -6.8260 2.7406 44 1 5.1371 -5.5754 3.7745 45 1 3.4890 -2.2614 -1.4019 46 1 4.1098 -0.7266 -0.7120 47 1 2.9383 1.0308 -1.9165 48 1 1.3857 0.6114 -2.6792 49 1 3.2190 1.0889 -4.5961 50 1 3.5227 -1.3780 -5.9368 51 1 5.0755 -0.9597 -5.1741 52 1 5.8337 0.4811 -9.5856 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000879221266.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:39:50 Heat of formation + Delta-G solvation = -137.813360 kcal Electronic energy + Delta-G solvation = -30867.021974 eV Core-core repulsion = 26672.657769 eV Total energy + Delta-G solvation = -4194.364205 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 341.215 amu Computer time = 1.61 seconds Orbital eigenvalues (eV) -41.93183 -41.12010 -39.73031 -38.14900 -36.21430 -35.82956 -34.88074 -34.43918 -32.95004 -31.22802 -30.14951 -28.39593 -28.30781 -27.50317 -26.21706 -24.30565 -23.65634 -22.05622 -21.54608 -21.31129 -20.95531 -19.38491 -19.10950 -17.96992 -17.63678 -17.28530 -17.18930 -16.74168 -16.52257 -16.26397 -15.94090 -15.56000 -15.44865 -15.24056 -15.04878 -14.74884 -14.58899 -14.42244 -14.21436 -13.95346 -13.72809 -13.36162 -13.26297 -13.17383 -13.06786 -12.93429 -12.88288 -12.83669 -12.73582 -12.57488 -12.45449 -12.37856 -12.15917 -11.98767 -11.94797 -11.68349 -11.63354 -11.41522 -11.13825 -10.94803 -10.64726 -10.24105 -9.94397 -9.41209 -8.43144 -6.49551 1.09748 1.28448 1.31393 1.44172 1.71501 1.72616 2.24316 2.30240 2.89319 2.92270 3.27841 3.56557 3.57750 3.73246 3.77730 3.92620 3.93372 4.01146 4.19837 4.26063 4.28716 4.44081 4.50140 4.55445 4.58795 4.67385 4.73870 4.75132 4.76029 4.81017 4.85794 4.86773 4.98848 4.99390 5.01652 5.05665 5.09964 5.16957 5.24001 5.25802 5.28854 5.36616 5.49227 5.54763 5.56775 5.80590 6.01308 6.09176 6.37328 6.51526 6.84027 7.13735 7.33045 7.42943 8.71542 Molecular weight = 341.21amu Principal moments of inertia in cm(-1) A = 0.009058 B = 0.002904 C = 0.002291 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3090.593782 B = 9639.011090 C =12217.571534 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C 0.060 3.940 3 H 0.078 0.922 4 C -0.119 4.119 5 C 0.162 3.838 6 H 0.084 0.916 7 N -0.690 5.690 8 C 0.643 3.357 9 O -0.593 6.593 10 O -0.367 6.367 11 C 0.126 3.874 12 C -0.184 4.184 13 C -0.134 4.134 14 C -0.178 4.178 15 C 0.029 3.971 16 N -0.511 5.511 17 C 0.040 3.960 18 C 0.494 3.506 19 O -0.581 6.581 20 N -0.706 5.706 21 C 0.235 3.765 22 C -0.545 4.545 23 H 0.062 0.938 24 C 0.029 3.971 25 N -0.929 5.929 26 Si 0.934 3.066 27 H -0.266 1.266 28 H -0.271 1.271 29 H -0.265 1.265 30 H 0.051 0.949 31 H 0.082 0.918 32 H 0.055 0.945 33 H 0.102 0.898 34 H 0.100 0.900 35 H 0.418 0.582 36 H 0.056 0.944 37 H 0.091 0.909 38 H 0.055 0.945 39 H 0.076 0.924 40 H 0.101 0.899 41 H 0.066 0.934 42 H 0.058 0.942 43 H 0.089 0.911 44 H 0.069 0.931 45 H 0.069 0.931 46 H 0.039 0.961 47 H 0.091 0.909 48 H 0.130 0.870 49 H 0.409 0.591 50 H 0.008 0.992 51 H 0.006 0.994 52 H 0.273 0.727 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.115 -3.531 30.530 30.891 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.048 4.048 3 H 0.096 0.904 4 C -0.157 4.157 5 C 0.057 3.943 6 H 0.102 0.898 7 N -0.350 5.350 8 C 0.396 3.604 9 O -0.483 6.483 10 O -0.282 6.282 11 C 0.090 3.910 12 C -0.241 4.241 13 C -0.191 4.191 14 C -0.235 4.235 15 C -0.100 4.100 16 N -0.236 5.236 17 C -0.091 4.091 18 C 0.281 3.719 19 O -0.461 6.461 20 N -0.357 5.357 21 C 0.111 3.889 22 C -0.583 4.583 23 H 0.081 0.919 24 C -0.172 4.172 25 N -0.568 5.568 26 Si 0.758 3.242 27 H -0.191 1.191 28 H -0.196 1.196 29 H -0.190 1.190 30 H 0.070 0.930 31 H 0.101 0.899 32 H 0.074 0.926 33 H 0.121 0.879 34 H 0.119 0.881 35 H 0.256 0.744 36 H 0.075 0.925 37 H 0.110 0.890 38 H 0.074 0.926 39 H 0.095 0.905 40 H 0.120 0.880 41 H 0.085 0.915 42 H 0.077 0.923 43 H 0.108 0.892 44 H 0.088 0.912 45 H 0.087 0.913 46 H 0.057 0.943 47 H 0.108 0.892 48 H 0.148 0.852 49 H 0.245 0.755 50 H 0.026 0.974 51 H 0.024 0.976 52 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -3.395 -5.206 29.933 30.571 hybrid contribution 1.140 0.452 -0.772 1.449 sum -2.255 -4.754 29.161 29.632 Atomic orbital electron populations 1.21773 0.92502 1.02241 1.02549 1.22609 0.97477 0.96892 0.87803 0.90411 1.22783 1.00101 0.95436 0.97421 1.21777 0.83774 1.00155 0.88544 0.89760 1.44658 1.28917 1.10249 1.51200 1.18377 0.79651 0.84100 0.78247 1.90935 1.67485 1.42089 1.47812 1.86293 1.38999 1.37905 1.64962 1.22398 0.93875 0.77967 0.96785 1.22505 1.02253 1.03234 0.96150 1.21876 0.93732 1.04450 0.99033 1.22459 0.99919 0.99505 1.01639 1.23618 0.91288 0.99065 0.96008 1.64524 1.26621 1.25920 1.06560 1.22231 1.01855 0.94136 0.90851 1.21340 0.79182 0.87507 0.83879 1.90632 1.57454 1.17940 1.80106 1.45998 1.57505 1.14416 1.17732 1.19030 0.91257 0.92833 0.85803 1.21284 1.38221 0.97297 1.01474 0.91938 1.25548 0.95042 1.01615 0.94971 1.69968 1.41627 1.37037 1.08147 0.85917 0.79625 0.80558 0.78138 1.19094 1.19554 1.18966 0.92968 0.89875 0.92637 0.87911 0.88125 0.74380 0.92487 0.89031 0.92643 0.90527 0.88042 0.91454 0.92301 0.89193 0.91239 0.91302 0.94259 0.89176 0.85243 0.75485 0.97369 0.97575 0.91799 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.79 9.32 71.98 0.67 -1.12 16 2 C 0.06 0.94 3.08 45.06 0.14 1.07 16 3 H 0.08 0.95 7.57 -2.39 -0.02 0.93 16 4 C -0.12 -1.57 6.31 31.47 0.20 -1.37 16 5 C 0.16 3.61 3.43 46.19 0.16 3.77 16 6 H 0.08 2.31 7.55 -2.38 -0.02 2.29 16 7 N -0.69 -14.22 5.18 -564.36 -2.92 -17.15 16 8 C 0.64 17.21 8.06 129.79 1.05 18.26 16 9 O -0.59 -20.05 11.53 19.82 0.23 -19.82 16 10 O -0.37 -8.51 9.94 -55.40 -0.55 -9.06 16 11 C 0.13 2.49 1.13 -10.80 -0.01 2.47 16 12 C -0.18 -4.19 8.37 71.98 0.60 -3.58 16 13 C -0.13 -1.66 8.85 71.98 0.64 -1.03 16 14 C -0.18 -3.33 8.37 71.98 0.60 -2.72 16 15 C 0.03 0.85 4.98 86.65 0.43 1.29 16 16 N -0.51 -12.88 4.89 -862.64 -4.22 -17.10 16 17 C 0.04 1.01 5.52 85.55 0.47 1.48 16 18 C 0.49 18.61 7.54 87.65 0.66 19.27 16 19 O -0.58 -27.18 13.52 -3.04 -0.04 -27.22 16 20 N -0.71 -28.39 5.55 -466.80 -2.59 -30.98 16 21 C 0.23 11.82 4.50 85.64 0.39 12.21 16 22 C -0.54 -30.42 9.83 25.60 0.25 -30.17 16 23 H 0.06 3.62 7.84 -2.92 -0.02 3.60 16 24 C 0.03 1.65 5.47 84.65 0.46 2.11 16 25 N -0.93 -55.86 13.96 21.45 0.30 -55.56 16 26 Si 0.93 45.28 27.47 68.60 1.88 47.16 16 27 H -0.27 -12.51 7.11 99.48 0.71 -11.80 16 28 H -0.27 -12.51 7.11 99.48 0.71 -11.80 16 29 H -0.27 -12.98 6.54 99.48 0.65 -12.33 16 30 H 0.05 0.84 8.14 -2.39 -0.02 0.82 16 31 H 0.08 0.71 8.14 -2.39 -0.02 0.69 16 32 H 0.05 0.79 8.14 -2.39 -0.02 0.77 16 33 H 0.10 0.83 7.75 -2.39 -0.02 0.81 16 34 H 0.10 1.07 7.69 -2.39 -0.02 1.05 16 35 H 0.42 5.87 8.50 -92.71 -0.79 5.08 16 36 H 0.06 1.30 8.14 -2.39 -0.02 1.28 16 37 H 0.09 1.61 8.14 -2.38 -0.02 1.59 16 38 H 0.05 1.68 5.88 -2.39 -0.01 1.66 16 39 H 0.08 0.81 8.14 -2.39 -0.02 0.79 16 40 H 0.10 0.85 8.14 -2.39 -0.02 0.83 16 41 H 0.07 0.85 8.14 -2.39 -0.02 0.83 16 42 H 0.06 1.49 5.88 -2.38 -0.01 1.48 16 43 H 0.09 1.28 8.14 -2.39 -0.02 1.26 16 44 H 0.07 1.12 8.14 -2.39 -0.02 1.10 16 45 H 0.07 2.79 5.97 -2.38 -0.01 2.77 16 46 H 0.04 1.12 8.02 -2.39 -0.02 1.11 16 47 H 0.09 1.78 7.81 -2.38 -0.02 1.76 16 48 H 0.13 2.63 8.14 -2.39 -0.02 2.61 16 49 H 0.41 14.05 8.32 -92.71 -0.77 13.28 16 50 H 0.01 0.45 7.20 -2.39 -0.02 0.43 16 51 H 0.01 0.33 7.57 -2.39 -0.02 0.32 16 52 H 0.27 15.28 8.31 -92.71 -0.77 14.51 16 Total: -1.00 -78.17 408.95 -1.90 -80.06 By element: Atomic # 1 Polarization: 28.41 SS G_CDS: -0.69 Total: 27.72 kcal Atomic # 6 Polarization: 15.23 SS G_CDS: 6.71 Total: 21.94 kcal Atomic # 7 Polarization: -111.35 SS G_CDS: -9.43 Total: -120.78 kcal Atomic # 8 Polarization: -55.74 SS G_CDS: -0.36 Total: -56.10 kcal Atomic # 14 Polarization: 45.28 SS G_CDS: 1.88 Total: 47.16 kcal Total: -78.17 -1.90 -80.06 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000879221266.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -57.750 kcal (2) G-P(sol) polarization free energy of solvation -78.166 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -135.917 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.897 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.063 kcal (6) G-S(sol) free energy of system = (1) + (5) -137.813 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.61 seconds