Wall clock time and date at job start Wed Apr 1 2020 01:29:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45205 * 1 3 3 C 1.34635 * 116.99728 * 2 1 4 4 O 1.21504 * 120.00281 * 0.02562 * 3 2 1 5 5 N 1.34781 * 119.99355 * 180.02562 * 3 2 1 6 6 C 1.46507 * 119.99257 * 180.02562 * 5 3 2 7 7 H 1.08996 * 109.47170 * 324.99863 * 6 5 3 8 8 C 1.50704 * 109.46862 * 204.99550 * 6 5 3 9 9 O 1.21281 * 119.99871 * 327.97022 * 8 6 5 10 10 N 1.34769 * 119.99798 * 147.96200 * 8 6 5 11 11 C 1.46969 * 120.59471 * 184.91230 * 10 8 6 12 12 C 1.53364 * 108.77712 * 124.84042 * 11 10 8 13 13 H 1.09001 * 109.61532 * 169.08622 * 12 11 10 14 14 C 1.53002 * 109.61111 * 289.59799 * 12 11 10 15 15 N 1.46970 * 108.63478 * 49.34072 * 12 11 10 16 16 C 1.36936 * 120.59186 * 124.75175 * 15 12 11 17 17 H 1.07997 * 119.99771 * 208.73060 * 16 15 12 18 18 C 1.38811 * 120.00339 * 28.73039 * 16 15 12 19 19 N 1.31619 * 119.99975 * 13.58293 * 18 16 15 20 20 Si 1.86794 * 120.00183 * 193.58087 * 18 16 15 21 21 H 1.48505 * 109.46979 * 0.02562 * 20 18 16 22 22 H 1.48506 * 109.47353 * 119.99915 * 20 18 16 23 23 H 1.48497 * 109.47522 * 240.00036 * 20 18 16 24 24 C 1.46961 * 118.81099 * 304.77335 * 15 12 11 25 25 H 1.08997 * 109.61203 * 295.48030 * 24 15 12 26 26 C 1.53001 * 109.60850 * 175.14006 * 24 15 12 27 27 C 1.47002 * 120.61950 * 4.67418 * 10 8 6 28 28 C 1.53004 * 109.47229 * 85.00193 * 6 5 3 29 29 C 1.52990 * 109.47161 * 178.07233 * 28 6 5 30 30 C 1.53003 * 109.46638 * 298.07215 * 28 6 5 31 31 H 1.08994 * 109.47212 * 59.99619 * 1 2 3 32 32 H 1.09004 * 109.47117 * 179.97438 * 1 2 3 33 33 H 1.09000 * 109.46727 * 299.99420 * 1 2 3 34 34 H 0.96996 * 120.00486 * 359.97438 * 5 3 2 35 35 H 1.09005 * 109.60665 * 5.01018 * 11 10 8 36 36 H 1.09002 * 109.61238 * 244.67272 * 11 10 8 37 37 H 1.08997 * 109.47498 * 59.99854 * 14 12 11 38 38 H 1.09002 * 109.47393 * 179.97438 * 14 12 11 39 39 H 1.09003 * 109.47079 * 299.99905 * 14 12 11 40 40 H 0.96999 * 119.99899 * 184.96404 * 19 18 16 41 41 H 1.09003 * 109.47138 * 60.26798 * 26 24 15 42 42 H 1.09002 * 109.46866 * 180.26459 * 26 24 15 43 43 H 1.09000 * 109.47338 * 300.26713 * 26 24 15 44 44 H 1.09004 * 109.46540 * 115.40952 * 27 10 8 45 45 H 1.08999 * 109.75034 * 355.07588 * 27 10 8 46 46 H 1.08999 * 109.46783 * 58.06658 * 28 6 5 47 47 H 1.08998 * 109.47418 * 61.97479 * 29 28 6 48 48 H 1.09001 * 109.47505 * 181.97789 * 29 28 6 49 49 H 1.09004 * 109.47405 * 301.97763 * 29 28 6 50 50 H 1.08995 * 109.47445 * 60.00062 * 30 28 6 51 51 H 1.09001 * 109.46580 * 180.02562 * 30 28 6 52 52 H 1.09007 * 109.47233 * 299.99588 * 30 28 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4521 0.0000 0.0000 3 6 2.0632 1.1996 0.0000 4 8 1.4015 2.2187 0.0005 5 7 3.4092 1.2701 -0.0005 6 6 4.0742 2.5755 0.0000 7 1 3.4889 3.2817 -0.5887 8 6 5.4495 2.4389 -0.6010 9 8 6.0713 1.4067 -0.4640 10 7 5.9882 3.4637 -1.2908 11 6 7.2807 3.3087 -1.9731 12 6 7.1053 3.6748 -3.4520 13 1 8.0828 3.7531 -3.9280 14 6 6.2740 2.5982 -4.1525 15 7 6.4106 4.9672 -3.5366 16 6 6.9598 6.0092 -4.2350 17 1 6.7428 7.0269 -3.9459 18 6 7.7954 5.7575 -5.3144 19 7 7.8520 4.5501 -5.8353 20 14 8.8395 7.1324 -6.0279 21 1 8.5952 8.3847 -5.2680 22 1 10.2752 6.7660 -5.9289 23 1 8.4786 7.3394 -7.4534 24 6 5.1161 5.1212 -2.8580 25 1 4.3823 4.4572 -3.3147 26 6 4.6423 6.5710 -2.9791 27 6 5.2915 4.7551 -1.3791 28 6 4.1944 3.0861 1.4374 29 6 4.9316 4.4267 1.4424 30 6 2.7965 3.2704 2.0315 31 1 -0.3633 0.5139 -0.8899 32 1 -0.3633 -1.0277 -0.0005 33 1 -0.3633 0.5138 0.8901 34 1 3.9375 0.4566 -0.0005 35 1 7.6169 2.2752 -1.8894 36 1 8.0168 3.9708 -1.5171 37 1 5.2951 2.5289 -3.6781 38 1 6.1504 2.8608 -5.2031 39 1 6.7839 1.6379 -4.0752 40 1 8.4877 4.3561 -6.5419 41 1 4.5277 6.8291 -4.0319 42 1 3.6845 6.6837 -2.4710 43 1 5.3769 7.2329 -2.5205 44 1 5.8837 5.5222 -0.8800 45 1 4.3142 4.6798 -0.9024 46 1 4.7505 2.3633 2.0344 47 1 4.3578 5.1590 0.8746 48 1 5.0482 4.7734 2.4692 49 1 5.9141 4.3028 0.9870 50 1 2.2713 2.3154 2.0279 51 1 2.8821 3.6346 3.0553 52 1 2.2404 3.9932 1.4345 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000880458059.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:29:57 Heat of formation + Delta-G solvation = -79.720210 kcal Electronic energy + Delta-G solvation = -33227.378217 eV Core-core repulsion = 29035.533120 eV Total energy + Delta-G solvation = -4191.845097 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 341.215 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -41.03147 -39.94549 -37.78514 -36.93512 -35.69297 -34.29788 -33.43330 -32.75739 -31.32657 -28.56134 -27.96255 -27.53589 -26.75487 -26.25669 -25.06756 -23.63527 -21.61692 -21.38554 -20.52284 -19.85745 -19.05050 -18.29430 -17.29434 -16.77110 -16.70013 -16.16300 -15.78746 -15.30167 -15.11861 -15.03431 -14.19268 -14.07689 -14.01268 -13.90105 -13.56502 -13.33320 -12.91131 -12.89344 -12.69573 -12.60537 -12.23232 -12.16207 -12.03078 -11.77594 -11.66868 -11.57209 -11.25448 -11.11578 -11.05969 -10.94893 -10.82970 -10.68313 -10.65704 -10.62191 -10.55858 -10.15253 -10.07882 -9.82868 -9.73254 -9.42572 -9.16997 -8.54973 -8.26088 -6.70897 -5.81020 -3.31774 1.95084 2.67912 2.84252 3.30775 3.33511 3.42269 3.43116 4.14844 4.40981 4.51263 4.69931 4.77822 4.96801 5.04654 5.07082 5.16469 5.21803 5.31878 5.32942 5.51938 5.57639 5.59659 5.63804 5.79289 5.82226 5.87006 5.94582 5.98945 6.03048 6.11605 6.19268 6.21393 6.23436 6.26720 6.31052 6.36042 6.44490 6.58261 6.70818 6.83184 6.88524 6.97992 7.02083 7.30637 7.56255 7.61285 7.73579 7.81934 8.22662 8.35342 8.37300 9.14330 9.75411 10.31230 11.22738 Molecular weight = 341.21amu Principal moments of inertia in cm(-1) A = 0.017170 B = 0.003350 C = 0.003257 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1630.343863 B = 8355.249629 C = 8595.026374 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.057 3.943 2 O -0.372 6.372 3 C 0.650 3.350 4 O -0.567 6.567 5 N -0.691 5.691 6 C 0.147 3.853 7 H 0.114 0.886 8 C 0.510 3.490 9 O -0.550 6.550 10 N -0.582 5.582 11 C 0.092 3.908 12 C 0.177 3.823 13 H 0.114 0.886 14 C -0.138 4.138 15 N -0.581 5.581 16 C -0.249 4.249 17 H 0.073 0.927 18 C 0.003 3.997 19 N -0.898 5.898 20 Si 0.901 3.099 21 H -0.279 1.279 22 H -0.290 1.290 23 H -0.291 1.291 24 C 0.152 3.848 25 H 0.031 0.969 26 C -0.136 4.136 27 C 0.085 3.915 28 C -0.099 4.099 29 C -0.158 4.158 30 C -0.135 4.135 31 H 0.064 0.936 32 H 0.101 0.899 33 H 0.063 0.937 34 H 0.415 0.585 35 H 0.081 0.919 36 H 0.061 0.939 37 H 0.020 0.980 38 H 0.074 0.926 39 H 0.028 0.972 40 H 0.253 0.747 41 H 0.066 0.934 42 H 0.041 0.959 43 H 0.057 0.943 44 H 0.073 0.927 45 H 0.077 0.923 46 H 0.078 0.922 47 H 0.066 0.934 48 H 0.062 0.938 49 H 0.064 0.936 50 H 0.051 0.949 51 H 0.051 0.949 52 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.376 -4.517 13.652 17.732 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.037 4.037 2 O -0.286 6.286 3 C 0.403 3.597 4 O -0.455 6.455 5 N -0.351 5.351 6 C 0.040 3.960 7 H 0.132 0.868 8 C 0.296 3.704 9 O -0.429 6.429 10 N -0.313 5.313 11 C -0.031 4.031 12 C 0.070 3.930 13 H 0.131 0.869 14 C -0.197 4.197 15 N -0.303 5.303 16 C -0.378 4.378 17 H 0.091 0.909 18 C -0.196 4.196 19 N -0.542 5.542 20 Si 0.731 3.269 21 H -0.204 1.204 22 H -0.217 1.217 23 H -0.218 1.218 24 C 0.044 3.956 25 H 0.049 0.951 26 C -0.194 4.194 27 C -0.039 4.039 28 C -0.119 4.119 29 C -0.215 4.215 30 C -0.193 4.193 31 H 0.083 0.917 32 H 0.119 0.881 33 H 0.081 0.919 34 H 0.252 0.748 35 H 0.099 0.901 36 H 0.080 0.920 37 H 0.039 0.961 38 H 0.093 0.907 39 H 0.047 0.953 40 H 0.063 0.937 41 H 0.085 0.915 42 H 0.060 0.940 43 H 0.076 0.924 44 H 0.091 0.909 45 H 0.095 0.905 46 H 0.097 0.903 47 H 0.085 0.915 48 H 0.081 0.919 49 H 0.083 0.917 50 H 0.071 0.929 51 H 0.070 0.930 52 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -10.378 -4.595 13.502 17.639 hybrid contribution 0.644 0.264 -0.513 0.865 sum -9.733 -4.331 12.989 16.799 Atomic orbital electron populations 1.23188 0.74384 1.03386 1.02767 1.86254 1.24167 1.31059 1.87131 1.17952 0.83222 0.82252 0.76261 1.91007 1.64585 1.34500 1.55439 1.44322 1.03114 1.10087 1.77614 1.21026 0.92213 0.84565 0.98222 0.86832 1.20213 0.87350 0.83888 0.78901 1.90657 1.62749 1.28844 1.60613 1.47990 1.22226 1.12012 1.49081 1.22587 0.82834 1.01661 0.96010 1.20826 0.99076 0.84589 0.88517 0.86899 1.21966 0.97812 0.97121 1.02766 1.44164 1.16587 1.10483 1.59103 1.19261 1.25151 0.87382 1.06032 0.90924 1.25059 1.02154 0.96648 0.95725 1.70005 1.36913 1.19830 1.27501 0.86259 0.80215 0.81725 0.78728 1.20363 1.21692 1.21838 1.20802 0.89590 0.95422 0.89780 0.95128 1.21771 0.98886 0.96175 1.02578 1.22790 0.96257 0.84490 1.00406 1.21472 0.98347 0.98276 0.93847 1.22153 1.00757 0.95979 1.02652 1.21853 0.94995 1.02382 1.00026 0.91741 0.88078 0.91869 0.74805 0.90094 0.92042 0.96134 0.90724 0.95273 0.93715 0.91527 0.93968 0.92426 0.90913 0.90486 0.90339 0.91476 0.91939 0.91695 0.92950 0.93005 0.91505 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.48 10.56 101.05 1.07 1.55 16 2 O -0.37 -4.47 10.62 -40.31 -0.43 -4.89 16 3 C 0.65 8.97 7.18 54.06 0.39 9.36 16 4 O -0.57 -8.69 13.26 -19.27 -0.26 -8.95 16 5 N -0.69 -9.40 4.98 -59.86 -0.30 -9.70 16 6 C 0.15 2.05 1.82 -69.07 -0.13 1.92 16 7 H 0.11 1.66 5.52 -51.93 -0.29 1.38 16 8 C 0.51 8.42 5.94 -10.99 -0.07 8.35 16 9 O -0.55 -10.35 15.57 5.56 0.09 -10.26 16 10 N -0.58 -9.89 2.16 -172.46 -0.37 -10.26 16 11 C 0.09 1.76 5.95 -3.60 -0.02 1.74 16 12 C 0.18 3.90 2.34 -67.48 -0.16 3.75 16 13 H 0.11 2.83 5.89 -51.93 -0.31 2.53 16 14 C -0.14 -3.04 8.95 37.16 0.33 -2.71 16 15 N -0.58 -13.04 2.69 -157.03 -0.42 -13.47 16 16 C -0.25 -6.15 8.61 -15.06 -0.13 -6.28 16 17 H 0.07 1.76 6.19 -52.49 -0.32 1.43 16 18 C 0.00 0.07 5.00 -17.43 -0.09 -0.02 16 19 N -0.90 -24.08 9.96 55.49 0.55 -23.53 16 20 Si 0.90 20.58 29.58 -169.99 -5.03 15.55 16 21 H -0.28 -6.23 7.11 56.52 0.40 -5.83 16 22 H -0.29 -6.73 7.11 56.52 0.40 -6.33 16 23 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 24 C 0.15 2.86 3.22 -67.49 -0.22 2.64 16 25 H 0.03 0.64 7.38 -51.93 -0.38 0.25 16 26 C -0.14 -2.30 7.95 37.16 0.30 -2.00 16 27 C 0.09 1.33 3.56 -3.58 -0.01 1.32 16 28 C -0.10 -1.18 2.69 -90.62 -0.24 -1.43 16 29 C -0.16 -1.73 7.51 37.15 0.28 -1.45 16 30 C -0.14 -1.54 7.74 37.16 0.29 -1.25 16 31 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 32 H 0.10 0.54 8.14 -51.93 -0.42 0.12 16 33 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 34 H 0.41 5.51 7.99 -40.82 -0.33 5.19 16 35 H 0.08 1.57 6.99 -51.93 -0.36 1.21 16 36 H 0.06 1.15 8.14 -51.93 -0.42 0.73 16 37 H 0.02 0.43 7.00 -51.93 -0.36 0.07 16 38 H 0.07 1.85 7.24 -51.93 -0.38 1.48 16 39 H 0.03 0.60 8.14 -51.93 -0.42 0.18 16 40 H 0.25 6.67 8.32 -40.82 -0.34 6.33 16 41 H 0.07 1.24 7.69 -51.93 -0.40 0.84 16 42 H 0.04 0.58 8.14 -51.93 -0.42 0.16 16 43 H 0.06 0.96 7.35 -51.93 -0.38 0.58 16 44 H 0.07 1.11 7.80 -51.93 -0.41 0.70 16 45 H 0.08 1.04 3.84 -51.93 -0.20 0.84 16 46 H 0.08 0.96 8.14 -51.93 -0.42 0.54 16 47 H 0.07 0.70 6.41 -51.93 -0.33 0.37 16 48 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 49 H 0.06 0.81 5.88 -51.93 -0.31 0.51 16 50 H 0.05 0.65 5.72 -51.93 -0.30 0.35 16 51 H 0.05 0.51 8.14 -51.93 -0.42 0.08 16 52 H 0.07 0.81 7.66 -51.93 -0.40 0.42 16 LS Contribution 387.31 15.07 5.84 5.84 Total: -1.00 -29.01 387.31 -7.13 -36.14 By element: Atomic # 1 Polarization: 16.44 SS G_CDS: -8.39 Total: 8.05 kcal Atomic # 6 Polarization: 13.90 SS G_CDS: 1.59 Total: 15.49 kcal Atomic # 7 Polarization: -56.42 SS G_CDS: -0.54 Total: -56.96 kcal Atomic # 8 Polarization: -23.51 SS G_CDS: -0.60 Total: -24.10 kcal Atomic # 14 Polarization: 20.58 SS G_CDS: -5.03 Total: 15.55 kcal Total LS contribution 5.84 Total: 5.84 kcal Total: -29.01 -7.13 -36.14 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000880458059.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.579 kcal (2) G-P(sol) polarization free energy of solvation -29.014 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.593 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.128 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.141 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.720 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds