Wall clock time and date at job start Wed Apr 1 2020 01:29:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45205 * 1 3 3 C 1.34635 * 116.99728 * 2 1 4 4 O 1.21504 * 120.00281 * 0.02562 * 3 2 1 5 5 N 1.34781 * 119.99355 * 180.02562 * 3 2 1 6 6 C 1.46507 * 119.99257 * 180.02562 * 5 3 2 7 7 H 1.08996 * 109.47170 * 324.99863 * 6 5 3 8 8 C 1.50704 * 109.46862 * 204.99550 * 6 5 3 9 9 O 1.21281 * 119.99871 * 327.97022 * 8 6 5 10 10 N 1.34769 * 119.99798 * 147.96200 * 8 6 5 11 11 C 1.46969 * 120.59471 * 184.91230 * 10 8 6 12 12 C 1.53364 * 108.77712 * 124.84042 * 11 10 8 13 13 H 1.09001 * 109.61532 * 169.08622 * 12 11 10 14 14 C 1.53002 * 109.61111 * 289.59799 * 12 11 10 15 15 N 1.46970 * 108.63478 * 49.34072 * 12 11 10 16 16 C 1.36936 * 120.59186 * 124.75175 * 15 12 11 17 17 H 1.07997 * 119.99771 * 208.73060 * 16 15 12 18 18 C 1.38811 * 120.00339 * 28.73039 * 16 15 12 19 19 N 1.31619 * 119.99975 * 13.58293 * 18 16 15 20 20 Si 1.86794 * 120.00183 * 193.58087 * 18 16 15 21 21 H 1.48505 * 109.46979 * 0.02562 * 20 18 16 22 22 H 1.48506 * 109.47353 * 119.99915 * 20 18 16 23 23 H 1.48497 * 109.47522 * 240.00036 * 20 18 16 24 24 C 1.46961 * 118.81099 * 304.77335 * 15 12 11 25 25 H 1.08997 * 109.61203 * 295.48030 * 24 15 12 26 26 C 1.53001 * 109.60850 * 175.14006 * 24 15 12 27 27 C 1.47002 * 120.61950 * 4.67418 * 10 8 6 28 28 C 1.53004 * 109.47229 * 85.00193 * 6 5 3 29 29 C 1.52990 * 109.47161 * 178.07233 * 28 6 5 30 30 C 1.53003 * 109.46638 * 298.07215 * 28 6 5 31 31 H 1.08994 * 109.47212 * 59.99619 * 1 2 3 32 32 H 1.09004 * 109.47117 * 179.97438 * 1 2 3 33 33 H 1.09000 * 109.46727 * 299.99420 * 1 2 3 34 34 H 0.96996 * 120.00486 * 359.97438 * 5 3 2 35 35 H 1.09005 * 109.60665 * 5.01018 * 11 10 8 36 36 H 1.09002 * 109.61238 * 244.67272 * 11 10 8 37 37 H 1.08997 * 109.47498 * 59.99854 * 14 12 11 38 38 H 1.09002 * 109.47393 * 179.97438 * 14 12 11 39 39 H 1.09003 * 109.47079 * 299.99905 * 14 12 11 40 40 H 0.96999 * 119.99899 * 184.96404 * 19 18 16 41 41 H 1.09003 * 109.47138 * 60.26798 * 26 24 15 42 42 H 1.09002 * 109.46866 * 180.26459 * 26 24 15 43 43 H 1.09000 * 109.47338 * 300.26713 * 26 24 15 44 44 H 1.09004 * 109.46540 * 115.40952 * 27 10 8 45 45 H 1.08999 * 109.75034 * 355.07588 * 27 10 8 46 46 H 1.08999 * 109.46783 * 58.06658 * 28 6 5 47 47 H 1.08998 * 109.47418 * 61.97479 * 29 28 6 48 48 H 1.09001 * 109.47505 * 181.97789 * 29 28 6 49 49 H 1.09004 * 109.47405 * 301.97763 * 29 28 6 50 50 H 1.08995 * 109.47445 * 60.00062 * 30 28 6 51 51 H 1.09001 * 109.46580 * 180.02562 * 30 28 6 52 52 H 1.09007 * 109.47233 * 299.99588 * 30 28 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4521 0.0000 0.0000 3 6 2.0632 1.1996 0.0000 4 8 1.4015 2.2187 0.0005 5 7 3.4092 1.2701 -0.0005 6 6 4.0742 2.5755 0.0000 7 1 3.4889 3.2817 -0.5887 8 6 5.4495 2.4389 -0.6010 9 8 6.0713 1.4067 -0.4640 10 7 5.9882 3.4637 -1.2908 11 6 7.2807 3.3087 -1.9731 12 6 7.1053 3.6748 -3.4520 13 1 8.0828 3.7531 -3.9280 14 6 6.2740 2.5982 -4.1525 15 7 6.4106 4.9672 -3.5366 16 6 6.9598 6.0092 -4.2350 17 1 6.7428 7.0269 -3.9459 18 6 7.7954 5.7575 -5.3144 19 7 7.8520 4.5501 -5.8353 20 14 8.8395 7.1324 -6.0279 21 1 8.5952 8.3847 -5.2680 22 1 10.2752 6.7660 -5.9289 23 1 8.4786 7.3394 -7.4534 24 6 5.1161 5.1212 -2.8580 25 1 4.3823 4.4572 -3.3147 26 6 4.6423 6.5710 -2.9791 27 6 5.2915 4.7551 -1.3791 28 6 4.1944 3.0861 1.4374 29 6 4.9316 4.4267 1.4424 30 6 2.7965 3.2704 2.0315 31 1 -0.3633 0.5139 -0.8899 32 1 -0.3633 -1.0277 -0.0005 33 1 -0.3633 0.5138 0.8901 34 1 3.9375 0.4566 -0.0005 35 1 7.6169 2.2752 -1.8894 36 1 8.0168 3.9708 -1.5171 37 1 5.2951 2.5289 -3.6781 38 1 6.1504 2.8608 -5.2031 39 1 6.7839 1.6379 -4.0752 40 1 8.4877 4.3561 -6.5419 41 1 4.5277 6.8291 -4.0319 42 1 3.6845 6.6837 -2.4710 43 1 5.3769 7.2329 -2.5205 44 1 5.8837 5.5222 -0.8800 45 1 4.3142 4.6798 -0.9024 46 1 4.7505 2.3633 2.0344 47 1 4.3578 5.1590 0.8746 48 1 5.0482 4.7734 2.4692 49 1 5.9141 4.3028 0.9870 50 1 2.2713 2.3154 2.0279 51 1 2.8821 3.6346 3.0553 52 1 2.2404 3.9932 1.4345 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000880458059.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:29:57 Heat of formation + Delta-G solvation = -98.003446 kcal Electronic energy + Delta-G solvation = -33228.171038 eV Core-core repulsion = 29035.533120 eV Total energy + Delta-G solvation = -4192.637918 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 341.215 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -42.18863 -41.15129 -39.22054 -38.08960 -36.76505 -35.81132 -34.54723 -34.32027 -33.11130 -29.84880 -29.47624 -28.51478 -27.74609 -27.57219 -26.56531 -25.34201 -22.84140 -22.58957 -21.85474 -21.09008 -20.46026 -19.63686 -18.44303 -18.04261 -17.78240 -17.62654 -17.07493 -16.88266 -16.47650 -16.22874 -15.74966 -15.39417 -15.28764 -15.15440 -14.90564 -14.76019 -14.30398 -14.00530 -13.77365 -13.70793 -13.59626 -13.52091 -13.17862 -12.99502 -12.88109 -12.83568 -12.81434 -12.64508 -12.38807 -12.29822 -12.27329 -12.09673 -11.94875 -11.91938 -11.74363 -11.63400 -11.58750 -11.52525 -11.40826 -10.80433 -10.47244 -10.29082 -9.76642 -8.53923 -7.73555 -5.25789 0.92619 1.48818 1.51605 1.54316 1.61493 1.68100 1.99564 2.56804 3.17372 3.27996 3.38159 3.50508 3.70276 3.77930 4.11989 4.15461 4.20775 4.23275 4.35980 4.37700 4.39798 4.46537 4.59029 4.62601 4.65480 4.70495 4.70924 4.80544 4.81842 4.87429 4.92019 4.94291 4.96994 5.03348 5.09828 5.13670 5.16263 5.28217 5.30369 5.36596 5.41554 5.45884 5.56479 5.73748 5.74955 5.85857 6.24406 6.40241 6.47563 6.99234 7.19556 7.23310 7.91645 8.43575 9.27378 Molecular weight = 341.21amu Principal moments of inertia in cm(-1) A = 0.017170 B = 0.003350 C = 0.003257 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1630.343863 B = 8355.249629 C = 8595.026374 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.050 3.950 2 O -0.378 6.378 3 C 0.651 3.349 4 O -0.584 6.584 5 N -0.693 5.693 6 C 0.154 3.846 7 H 0.111 0.889 8 C 0.513 3.487 9 O -0.573 6.573 10 N -0.584 5.584 11 C 0.106 3.894 12 C 0.178 3.822 13 H 0.081 0.919 14 C -0.120 4.120 15 N -0.594 5.594 16 C -0.243 4.243 17 H 0.080 0.920 18 C -0.049 4.049 19 N -0.926 5.926 20 Si 0.956 3.044 21 H -0.266 1.266 22 H -0.297 1.297 23 H -0.302 1.302 24 C 0.144 3.856 25 H 0.012 0.988 26 C -0.129 4.129 27 C 0.096 3.904 28 C -0.093 4.093 29 C -0.156 4.156 30 C -0.127 4.127 31 H 0.060 0.940 32 H 0.134 0.866 33 H 0.067 0.933 34 H 0.416 0.584 35 H 0.076 0.924 36 H 0.066 0.934 37 H 0.021 0.979 38 H 0.041 0.959 39 H 0.034 0.966 40 H 0.244 0.756 41 H 0.042 0.958 42 H 0.078 0.922 43 H 0.060 0.940 44 H 0.086 0.914 45 H 0.105 0.895 46 H 0.076 0.924 47 H 0.075 0.925 48 H 0.081 0.919 49 H 0.049 0.951 50 H 0.039 0.961 51 H 0.071 0.929 52 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.751 -3.682 16.008 20.197 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.044 4.044 2 O -0.291 6.291 3 C 0.404 3.596 4 O -0.474 6.474 5 N -0.353 5.353 6 C 0.047 3.953 7 H 0.128 0.872 8 C 0.300 3.700 9 O -0.454 6.454 10 N -0.315 5.315 11 C -0.018 4.018 12 C 0.071 3.929 13 H 0.099 0.901 14 C -0.179 4.179 15 N -0.317 5.317 16 C -0.373 4.373 17 H 0.098 0.902 18 C -0.245 4.245 19 N -0.573 5.573 20 Si 0.786 3.214 21 H -0.190 1.190 22 H -0.224 1.224 23 H -0.230 1.230 24 C 0.037 3.963 25 H 0.030 0.970 26 C -0.186 4.186 27 C -0.027 4.027 28 C -0.114 4.114 29 C -0.213 4.213 30 C -0.184 4.184 31 H 0.079 0.921 32 H 0.152 0.848 33 H 0.086 0.914 34 H 0.253 0.747 35 H 0.094 0.906 36 H 0.085 0.915 37 H 0.040 0.960 38 H 0.060 0.940 39 H 0.053 0.947 40 H 0.054 0.946 41 H 0.062 0.938 42 H 0.097 0.903 43 H 0.079 0.921 44 H 0.104 0.896 45 H 0.123 0.877 46 H 0.095 0.905 47 H 0.094 0.906 48 H 0.100 0.900 49 H 0.068 0.932 50 H 0.058 0.942 51 H 0.089 0.911 52 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -11.788 -3.751 15.890 20.138 hybrid contribution 0.967 -0.066 -1.229 1.565 sum -10.820 -3.817 14.661 18.617 Atomic orbital electron populations 1.23527 0.72423 1.05625 1.02832 1.86268 1.26066 1.30026 1.86753 1.18003 0.83102 0.82580 0.75899 1.90989 1.64908 1.35186 1.56305 1.44330 1.03310 1.09995 1.77644 1.20996 0.90145 0.84818 0.99361 0.87161 1.20637 0.88050 0.83063 0.78237 1.90648 1.63600 1.29704 1.61419 1.47976 1.21627 1.12832 1.49033 1.22210 0.84166 1.01354 0.94087 1.20643 0.97401 0.84652 0.90213 0.90123 1.21764 0.97987 0.97539 1.00653 1.44363 1.18096 1.10014 1.59192 1.19565 1.24140 0.88299 1.05313 0.90202 1.25684 1.03906 0.98201 0.96669 1.70163 1.37579 1.21366 1.28159 0.85372 0.78395 0.80173 0.77415 1.19033 1.22422 1.23021 1.21024 0.87428 0.96601 0.91202 0.97020 1.21699 1.00836 0.94501 1.01599 1.22764 0.97817 0.84080 0.98087 1.21464 0.98966 0.98783 0.92144 1.22144 0.99743 0.95444 1.03993 1.21765 0.94073 1.01598 1.00977 0.92109 0.84829 0.91389 0.74707 0.90573 0.91540 0.95977 0.93957 0.94702 0.94634 0.93849 0.90326 0.92075 0.89563 0.87738 0.90515 0.90595 0.90027 0.93186 0.94169 0.91052 0.92129 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.05 0.74 10.56 113.37 1.20 1.94 16 2 O -0.38 -8.48 10.62 -55.45 -0.59 -9.07 16 3 C 0.65 17.05 7.18 129.79 0.93 17.98 16 4 O -0.58 -16.98 13.26 19.83 0.26 -16.72 16 5 N -0.69 -17.96 4.98 -573.70 -2.86 -20.81 16 6 C 0.15 4.01 1.82 44.25 0.08 4.09 16 7 H 0.11 2.97 5.52 -2.39 -0.01 2.96 16 8 C 0.51 16.23 5.94 87.66 0.52 16.75 16 9 O -0.57 -21.12 15.57 -3.03 -0.05 -21.17 16 10 N -0.58 -19.07 2.16 -817.93 -1.77 -20.84 16 11 C 0.11 4.00 5.95 86.41 0.51 4.51 16 12 C 0.18 8.00 2.34 45.02 0.11 8.10 16 13 H 0.08 4.20 5.89 -2.39 -0.01 4.18 16 14 C -0.12 -5.46 8.95 71.98 0.64 -4.82 16 15 N -0.59 -26.66 2.69 -650.72 -1.75 -28.41 16 16 C -0.24 -11.99 8.61 84.03 0.72 -11.27 16 17 H 0.08 3.77 6.19 -2.91 -0.02 3.76 16 18 C -0.05 -2.57 5.00 84.86 0.42 -2.15 16 19 N -0.93 -51.39 9.96 21.65 0.22 -51.18 16 20 Si 0.96 42.92 29.58 68.60 2.03 44.95 16 21 H -0.27 -11.24 7.11 99.48 0.71 -10.54 16 22 H -0.30 -13.52 7.11 99.48 0.71 -12.82 16 23 H -0.30 -14.00 7.11 99.48 0.71 -13.30 16 24 C 0.14 5.26 3.22 45.03 0.15 5.40 16 25 H 0.01 0.49 7.38 -2.39 -0.02 0.47 16 26 C -0.13 -4.06 7.95 71.98 0.57 -3.49 16 27 C 0.10 2.78 3.56 86.41 0.31 3.09 16 28 C -0.09 -1.99 2.69 -10.79 -0.03 -2.01 16 29 C -0.16 -2.90 7.51 71.98 0.54 -2.36 16 30 C -0.13 -2.54 7.74 71.98 0.56 -1.98 16 31 H 0.06 0.96 8.14 -2.39 -0.02 0.94 16 32 H 0.13 1.08 8.14 -2.38 -0.02 1.06 16 33 H 0.07 0.95 8.14 -2.39 -0.02 0.93 16 34 H 0.42 10.67 7.99 -92.71 -0.74 9.93 16 35 H 0.08 2.95 6.99 -2.38 -0.02 2.94 16 36 H 0.07 2.44 8.14 -2.39 -0.02 2.42 16 37 H 0.02 0.95 7.00 -2.39 -0.02 0.93 16 38 H 0.04 2.17 7.24 -2.39 -0.02 2.15 16 39 H 0.03 1.48 8.14 -2.39 -0.02 1.46 16 40 H 0.24 13.43 8.32 -92.71 -0.77 12.66 16 41 H 0.04 1.56 7.69 -2.39 -0.02 1.54 16 42 H 0.08 1.90 8.14 -2.39 -0.02 1.88 16 43 H 0.06 1.88 7.35 -2.39 -0.02 1.87 16 44 H 0.09 2.34 7.80 -2.38 -0.02 2.32 16 45 H 0.10 2.49 3.84 -2.39 -0.01 2.48 16 46 H 0.08 1.69 8.14 -2.39 -0.02 1.67 16 47 H 0.08 1.28 6.41 -2.39 -0.02 1.26 16 48 H 0.08 1.23 8.14 -2.39 -0.02 1.21 16 49 H 0.05 1.10 5.88 -2.38 -0.01 1.09 16 50 H 0.04 0.90 5.72 -2.39 -0.01 0.89 16 51 H 0.07 1.15 8.14 -2.39 -0.02 1.13 16 52 H 0.06 1.30 7.66 -2.38 -0.02 1.28 16 Total: -1.00 -63.61 387.31 2.93 -60.68 By element: Atomic # 1 Polarization: 28.57 SS G_CDS: 0.20 Total: 28.77 kcal Atomic # 6 Polarization: 26.56 SS G_CDS: 7.24 Total: 33.80 kcal Atomic # 7 Polarization: -115.07 SS G_CDS: -6.16 Total: -121.23 kcal Atomic # 8 Polarization: -46.59 SS G_CDS: -0.37 Total: -46.96 kcal Atomic # 14 Polarization: 42.92 SS G_CDS: 2.03 Total: 44.95 kcal Total: -63.61 2.93 -60.68 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000880458059.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.326 kcal (2) G-P(sol) polarization free energy of solvation -63.606 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -100.932 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.928 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.678 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.003 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds