Wall clock time and date at job start Wed Apr 1 2020 01:29:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45193 * 1 3 3 C 1.34641 * 117.00258 * 2 1 4 4 O 1.21506 * 119.99480 * 0.02562 * 3 2 1 5 5 N 1.34777 * 119.99978 * 179.97438 * 3 2 1 6 6 C 1.46493 * 120.00034 * 0.02562 * 5 3 2 7 7 C 1.46500 * 119.99915 * 179.97438 * 5 3 2 8 8 C 1.52994 * 109.47153 * 90.00355 * 7 5 3 9 9 C 1.53005 * 109.47159 * 180.02562 * 8 7 5 10 10 C 1.50694 * 109.46847 * 180.02562 * 9 8 7 11 11 O 1.21286 * 120.00723 * 359.97438 * 10 9 8 12 12 N 1.34786 * 119.99806 * 179.97438 * 10 9 8 13 13 C 1.46967 * 120.59322 * 179.97438 * 12 10 9 14 14 C 1.53363 * 108.77389 * 235.28943 * 13 12 10 15 15 H 1.08997 * 109.61397 * 70.23777 * 14 13 12 16 16 C 1.53005 * 109.61061 * 190.74709 * 14 13 12 17 17 N 1.46958 * 108.63718 * 310.49114 * 14 13 12 18 18 C 1.36944 * 120.59411 * 235.24936 * 17 14 13 19 19 H 1.07995 * 119.99847 * 54.29954 * 18 17 14 20 20 C 1.38810 * 120.00110 * 234.29637 * 18 17 14 21 21 N 1.31629 * 119.99807 * 20.01467 * 20 18 17 22 22 Si 1.86800 * 120.00331 * 200.01421 * 20 18 17 23 23 H 1.48504 * 109.47017 * 90.00120 * 22 20 18 24 24 H 1.48492 * 109.47429 * 210.00011 * 22 20 18 25 25 H 1.48506 * 109.46845 * 330.00438 * 22 20 18 26 26 C 1.46962 * 118.81224 * 55.22631 * 17 14 13 27 27 H 1.08999 * 109.61276 * 64.69415 * 26 17 14 28 28 C 1.53005 * 109.61048 * 185.02678 * 26 17 14 29 29 C 1.47296 * 120.80900 * 0.15731 * 12 10 9 30 30 H 1.09000 * 109.47137 * 59.99697 * 1 2 3 31 31 H 1.08995 * 109.47419 * 180.02562 * 1 2 3 32 32 H 1.09007 * 109.47302 * 300.00249 * 1 2 3 33 33 H 1.09001 * 109.47357 * 269.99346 * 6 5 3 34 34 H 1.08998 * 109.47911 * 29.99277 * 6 5 3 35 35 H 1.09000 * 109.47335 * 149.99310 * 6 5 3 36 36 H 1.09001 * 109.47114 * 330.00396 * 7 5 3 37 37 H 1.09001 * 109.47002 * 210.00990 * 7 5 3 38 38 H 1.09001 * 109.47076 * 60.00018 * 8 7 5 39 39 H 1.09003 * 109.46798 * 300.00057 * 8 7 5 40 40 H 1.08993 * 109.47196 * 60.00197 * 9 8 7 41 41 H 1.08998 * 109.46531 * 300.00028 * 9 8 7 42 42 H 1.09000 * 109.60863 * 115.45898 * 13 12 10 43 43 H 1.09004 * 109.60977 * 355.12118 * 13 12 10 44 44 H 1.09000 * 109.46867 * 59.99411 * 16 14 13 45 45 H 1.08992 * 109.47397 * 180.02562 * 16 14 13 46 46 H 1.09004 * 109.46921 * 300.00390 * 16 14 13 47 47 H 0.96998 * 119.99776 * 182.19504 * 21 20 18 48 48 H 1.09006 * 109.46766 * 51.97547 * 28 26 17 49 49 H 1.08999 * 109.47145 * 171.96640 * 28 26 17 50 50 H 1.08993 * 109.47540 * 291.96920 * 28 26 17 51 51 H 1.08995 * 109.54873 * 4.96862 * 29 12 10 52 52 H 1.08997 * 109.71305 * 244.59462 * 29 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4519 0.0000 0.0000 3 6 2.0632 1.1996 0.0000 4 8 1.4014 2.2186 0.0005 5 7 3.4092 1.2701 0.0005 6 6 4.2070 0.0415 0.0005 7 6 4.0743 2.5754 0.0000 8 6 4.3053 3.0307 1.4422 9 6 4.9994 4.3943 1.4416 10 6 5.2275 4.8423 2.8622 11 8 4.8697 4.1406 3.7844 12 7 5.8292 6.0232 3.1080 13 6 6.0576 6.4732 4.4883 14 6 5.4236 7.8582 4.6672 15 1 4.3375 7.7681 4.6517 16 6 5.8734 8.4606 5.9998 17 7 5.8627 8.7219 3.5622 18 6 6.4742 9.9208 3.8154 19 1 7.3466 9.9584 4.4509 20 6 5.9727 11.0877 3.2553 21 7 4.7301 11.1291 2.8231 22 14 7.0612 12.5993 3.1148 23 1 7.7754 12.5757 1.8130 24 1 6.2231 13.8223 3.1976 25 1 8.0507 12.6013 4.2223 26 6 5.6343 8.2758 2.1807 27 1 4.5632 8.2184 1.9872 28 6 6.2793 9.2654 1.2083 29 6 6.2677 6.8911 2.0017 30 1 -0.3633 0.5139 -0.8899 31 1 -0.3634 -1.0276 0.0005 32 1 -0.3634 0.5139 0.8900 33 1 4.4046 -0.2635 1.0282 34 1 3.6587 -0.7479 -0.5136 35 1 5.1514 0.2215 -0.5130 36 1 3.4465 3.3029 -0.5146 37 1 5.0324 2.4947 -0.5136 38 1 4.9331 2.3032 1.9567 39 1 3.3471 3.1113 1.9556 40 1 4.3713 5.1215 0.9273 41 1 5.9575 4.3139 0.9280 42 1 7.1288 6.5335 4.6808 43 1 5.6002 5.7689 5.1832 44 1 6.9593 8.5556 6.0074 45 1 5.4213 9.4444 6.1248 46 1 5.5599 7.8105 6.8166 47 1 4.3894 11.9341 2.4028 48 1 7.3204 9.4248 1.4894 49 1 6.2338 8.8626 0.1965 50 1 5.7434 10.2138 1.2461 51 1 5.9469 6.4622 1.0524 52 1 7.3539 6.9817 2.0138 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000880459421.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:29:43 Heat of formation + Delta-G solvation = -85.274528 kcal Electronic energy + Delta-G solvation = -31127.657937 eV Core-core repulsion = 26935.571986 eV Total energy + Delta-G solvation = -4192.085951 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 341.215 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -40.72270 -39.69933 -37.62387 -37.17856 -35.90141 -34.11837 -33.55046 -32.77506 -31.22539 -28.62498 -27.96103 -27.67451 -26.53601 -25.76205 -25.33155 -23.70189 -22.30367 -20.61682 -20.35386 -19.72472 -18.60923 -18.28243 -17.35155 -16.93036 -16.63034 -16.02541 -15.69760 -15.50227 -14.98435 -14.85871 -14.50896 -14.49652 -14.33594 -13.77214 -13.66097 -13.32498 -13.11558 -13.04578 -12.84040 -12.57098 -12.33026 -12.21547 -12.13409 -11.83010 -11.67965 -11.56865 -11.49415 -11.24047 -11.00839 -10.99638 -10.77299 -10.74739 -10.68292 -10.53314 -10.46401 -10.37038 -10.05899 -9.91910 -9.72624 -9.32489 -9.04899 -8.35816 -7.99488 -6.41488 -5.78258 -3.61661 1.91404 2.60879 3.02143 3.28332 3.37690 3.38315 3.45783 3.68891 4.38526 4.71053 4.72611 4.83049 4.89398 4.97564 4.99894 5.11651 5.16124 5.21494 5.24927 5.26493 5.37424 5.43302 5.45458 5.59314 5.74769 5.76260 5.90672 5.98616 6.04974 6.08636 6.10720 6.14925 6.20997 6.32002 6.37254 6.43753 6.55208 6.59868 6.69951 6.82045 6.98955 7.03261 7.11521 7.26659 7.37800 7.62632 7.80748 7.95712 8.05222 8.56702 8.59818 9.14022 9.66118 10.44532 11.11147 Molecular weight = 341.21amu Principal moments of inertia in cm(-1) A = 0.019535 B = 0.002271 C = 0.002201 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1432.987186 B =12329.103156 C =12720.996309 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.056 3.944 2 O -0.373 6.373 3 C 0.645 3.355 4 O -0.566 6.566 5 N -0.597 5.597 6 C 0.083 3.917 7 C 0.130 3.870 8 C -0.119 4.119 9 C -0.136 4.136 10 C 0.510 3.490 11 O -0.560 6.560 12 N -0.598 5.598 13 C 0.099 3.901 14 C 0.156 3.844 15 H 0.028 0.972 16 C -0.126 4.126 17 N -0.576 5.576 18 C -0.265 4.265 19 H 0.054 0.946 20 C 0.037 3.963 21 N -0.872 5.872 22 Si 0.884 3.116 23 H -0.282 1.282 24 H -0.290 1.290 25 H -0.275 1.275 26 C 0.181 3.819 27 H 0.032 0.968 28 C -0.144 4.144 29 C 0.088 3.912 30 H 0.063 0.937 31 H 0.101 0.899 32 H 0.064 0.936 33 H 0.058 0.942 34 H 0.076 0.924 35 H 0.075 0.925 36 H 0.089 0.911 37 H 0.086 0.914 38 H 0.071 0.929 39 H 0.075 0.925 40 H 0.096 0.904 41 H 0.091 0.909 42 H 0.060 0.940 43 H 0.078 0.922 44 H 0.052 0.948 45 H 0.066 0.934 46 H 0.036 0.964 47 H 0.255 0.745 48 H 0.052 0.948 49 H 0.023 0.977 50 H 0.091 0.909 51 H 0.070 0.930 52 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.391 -19.868 -8.107 21.462 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.039 4.039 2 O -0.286 6.286 3 C 0.399 3.601 4 O -0.454 6.454 5 N -0.337 5.337 6 C -0.060 4.060 7 C 0.009 3.991 8 C -0.158 4.158 9 C -0.176 4.176 10 C 0.298 3.702 11 O -0.439 6.439 12 N -0.330 5.330 13 C -0.025 4.025 14 C 0.050 3.950 15 H 0.046 0.954 16 C -0.184 4.184 17 N -0.301 5.301 18 C -0.394 4.394 19 H 0.071 0.929 20 C -0.165 4.165 21 N -0.512 5.512 22 Si 0.712 3.288 23 H -0.208 1.208 24 H -0.216 1.216 25 H -0.200 1.200 26 C 0.074 3.926 27 H 0.050 0.950 28 C -0.202 4.202 29 C -0.037 4.037 30 H 0.081 0.919 31 H 0.120 0.880 32 H 0.083 0.917 33 H 0.077 0.923 34 H 0.095 0.905 35 H 0.093 0.907 36 H 0.108 0.892 37 H 0.104 0.896 38 H 0.090 0.910 39 H 0.093 0.907 40 H 0.114 0.886 41 H 0.110 0.890 42 H 0.078 0.922 43 H 0.097 0.903 44 H 0.071 0.929 45 H 0.085 0.915 46 H 0.055 0.945 47 H 0.065 0.935 48 H 0.071 0.929 49 H 0.042 0.958 50 H 0.110 0.890 51 H 0.088 0.912 52 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -0.975 -19.796 -7.664 21.251 hybrid contribution 0.390 0.971 -0.224 1.070 sum -0.585 -18.826 -7.888 20.420 Atomic orbital electron populations 1.23194 0.74463 1.03360 1.02879 1.86223 1.24145 1.31185 1.87094 1.18102 0.83280 0.82167 0.76517 1.91029 1.64181 1.34858 1.55300 1.46624 1.02230 1.08588 1.76305 1.21801 0.95911 0.85837 1.02411 1.21624 0.97313 0.82503 0.97701 1.21698 1.02229 0.95774 0.96103 1.21554 1.02523 0.98243 0.95288 1.20513 0.77457 0.80949 0.91241 1.90641 1.52142 1.54583 1.46558 1.48134 1.58133 1.18399 1.08299 1.22280 1.00293 0.97841 0.82054 1.20868 0.95609 0.88616 0.89952 0.95394 1.21633 1.01253 1.00863 0.94663 1.43946 1.69168 1.18772 0.98173 1.18659 1.06537 0.82968 1.31282 0.92895 1.25581 0.94310 0.97325 0.99311 1.70162 1.12505 1.28164 1.40325 0.86626 0.80684 0.82930 0.78573 1.20797 1.21639 1.19961 1.20589 0.96228 0.89108 0.86641 0.95026 1.22006 1.01776 1.01992 0.94421 1.22703 0.99717 0.93421 0.87835 0.91868 0.88038 0.91740 0.92309 0.90534 0.90671 0.89222 0.89574 0.91027 0.90664 0.88593 0.89039 0.92204 0.90315 0.92877 0.91480 0.94467 0.93483 0.92883 0.95774 0.89026 0.91151 0.91699 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.43 10.56 101.05 1.07 1.50 16 2 O -0.37 -3.96 9.39 -40.33 -0.38 -4.33 16 3 C 0.65 8.26 8.40 54.06 0.45 8.71 16 4 O -0.57 -9.11 15.71 -19.28 -0.30 -9.41 16 5 N -0.60 -6.18 2.87 -187.42 -0.54 -6.72 16 6 C 0.08 0.57 10.49 59.84 0.63 1.19 16 7 C 0.13 1.28 5.45 -4.04 -0.02 1.25 16 8 C -0.12 -1.46 4.83 -26.73 -0.13 -1.59 16 9 C -0.14 -1.71 4.05 -27.88 -0.11 -1.83 16 10 C 0.51 8.88 7.70 -10.98 -0.08 8.80 16 11 O -0.56 -11.46 15.39 5.55 0.09 -11.38 16 12 N -0.60 -10.85 2.96 -172.25 -0.51 -11.36 16 13 C 0.10 1.90 5.89 -3.60 -0.02 1.88 16 14 C 0.16 3.36 3.65 -67.49 -0.25 3.12 16 15 H 0.03 0.67 8.14 -51.93 -0.42 0.25 16 16 C -0.13 -2.48 8.18 37.16 0.30 -2.18 16 17 N -0.58 -13.50 2.74 -157.06 -0.43 -13.93 16 18 C -0.26 -6.66 6.61 -15.06 -0.10 -6.76 16 19 H 0.05 1.36 7.18 -52.49 -0.38 0.99 16 20 C 0.04 0.96 3.31 -17.43 -0.06 0.90 16 21 N -0.87 -23.77 11.71 55.49 0.65 -23.12 16 22 Si 0.88 20.14 29.60 -169.99 -5.03 15.11 16 23 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 24 H -0.29 -6.77 7.11 56.52 0.40 -6.37 16 25 H -0.27 -6.21 7.11 56.52 0.40 -5.81 16 26 C 0.18 3.87 3.25 -67.51 -0.22 3.65 16 27 H 0.03 0.76 8.14 -51.93 -0.42 0.34 16 28 C -0.14 -3.01 7.84 37.16 0.29 -2.71 16 29 C 0.09 1.50 5.83 -3.44 -0.02 1.48 16 30 H 0.06 0.49 8.14 -51.93 -0.42 0.06 16 31 H 0.10 0.45 8.14 -51.93 -0.42 0.03 16 32 H 0.06 0.54 8.14 -51.92 -0.42 0.12 16 33 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 34 H 0.08 0.47 7.38 -51.93 -0.38 0.09 16 35 H 0.07 0.35 7.89 -51.93 -0.41 -0.06 16 36 H 0.09 0.98 7.42 -51.93 -0.39 0.60 16 37 H 0.09 0.59 7.89 -51.93 -0.41 0.18 16 38 H 0.07 0.89 8.10 -51.93 -0.42 0.47 16 39 H 0.07 1.17 8.10 -51.93 -0.42 0.75 16 40 H 0.10 1.18 7.73 -51.93 -0.40 0.78 16 41 H 0.09 0.91 7.93 -51.93 -0.41 0.50 16 42 H 0.06 1.11 8.12 -51.93 -0.42 0.69 16 43 H 0.08 1.52 6.99 -51.93 -0.36 1.16 16 44 H 0.05 1.02 7.45 -51.93 -0.39 0.64 16 45 H 0.07 1.45 7.75 -51.93 -0.40 1.05 16 46 H 0.04 0.63 8.14 -51.93 -0.42 0.20 16 47 H 0.26 6.75 8.31 -40.82 -0.34 6.41 16 48 H 0.05 1.12 7.56 -51.93 -0.39 0.73 16 49 H 0.02 0.42 8.14 -51.93 -0.42 -0.01 16 50 H 0.09 2.20 4.94 -51.93 -0.26 1.94 16 51 H 0.07 0.99 5.95 -51.93 -0.31 0.68 16 52 H 0.06 1.10 8.11 -51.93 -0.42 0.68 16 LS Contribution 407.66 15.07 6.14 6.14 Total: -1.00 -32.83 407.66 -7.67 -40.50 By element: Atomic # 1 Polarization: 10.18 SS G_CDS: -9.09 Total: 1.09 kcal Atomic # 6 Polarization: 15.68 SS G_CDS: 1.73 Total: 17.41 kcal Atomic # 7 Polarization: -54.30 SS G_CDS: -0.83 Total: -55.13 kcal Atomic # 8 Polarization: -24.53 SS G_CDS: -0.60 Total: -25.13 kcal Atomic # 14 Polarization: 20.14 SS G_CDS: -5.03 Total: 15.11 kcal Total LS contribution 6.14 Total: 6.14 kcal Total: -32.83 -7.67 -40.50 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000880459421.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.770 kcal (2) G-P(sol) polarization free energy of solvation -32.834 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.604 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.670 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.504 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.275 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds