Wall clock time and date at job start Wed Apr 1 2020 01:29:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45193 * 1 3 3 C 1.34641 * 117.00258 * 2 1 4 4 O 1.21506 * 119.99480 * 0.02562 * 3 2 1 5 5 N 1.34777 * 119.99978 * 179.97438 * 3 2 1 6 6 C 1.46493 * 120.00034 * 0.02562 * 5 3 2 7 7 C 1.46500 * 119.99915 * 179.97438 * 5 3 2 8 8 C 1.52994 * 109.47153 * 90.00355 * 7 5 3 9 9 C 1.53005 * 109.47159 * 180.02562 * 8 7 5 10 10 C 1.50694 * 109.46847 * 180.02562 * 9 8 7 11 11 O 1.21286 * 120.00723 * 359.97438 * 10 9 8 12 12 N 1.34786 * 119.99806 * 179.97438 * 10 9 8 13 13 C 1.46967 * 120.59322 * 179.97438 * 12 10 9 14 14 C 1.53363 * 108.77389 * 235.28943 * 13 12 10 15 15 H 1.08997 * 109.61397 * 70.23777 * 14 13 12 16 16 C 1.53005 * 109.61061 * 190.74709 * 14 13 12 17 17 N 1.46958 * 108.63718 * 310.49114 * 14 13 12 18 18 C 1.36944 * 120.59411 * 235.24936 * 17 14 13 19 19 H 1.07995 * 119.99847 * 54.29954 * 18 17 14 20 20 C 1.38810 * 120.00110 * 234.29637 * 18 17 14 21 21 N 1.31629 * 119.99807 * 20.01467 * 20 18 17 22 22 Si 1.86800 * 120.00331 * 200.01421 * 20 18 17 23 23 H 1.48504 * 109.47017 * 90.00120 * 22 20 18 24 24 H 1.48492 * 109.47429 * 210.00011 * 22 20 18 25 25 H 1.48506 * 109.46845 * 330.00438 * 22 20 18 26 26 C 1.46962 * 118.81224 * 55.22631 * 17 14 13 27 27 H 1.08999 * 109.61276 * 64.69415 * 26 17 14 28 28 C 1.53005 * 109.61048 * 185.02678 * 26 17 14 29 29 C 1.47296 * 120.80900 * 0.15731 * 12 10 9 30 30 H 1.09000 * 109.47137 * 59.99697 * 1 2 3 31 31 H 1.08995 * 109.47419 * 180.02562 * 1 2 3 32 32 H 1.09007 * 109.47302 * 300.00249 * 1 2 3 33 33 H 1.09001 * 109.47357 * 269.99346 * 6 5 3 34 34 H 1.08998 * 109.47911 * 29.99277 * 6 5 3 35 35 H 1.09000 * 109.47335 * 149.99310 * 6 5 3 36 36 H 1.09001 * 109.47114 * 330.00396 * 7 5 3 37 37 H 1.09001 * 109.47002 * 210.00990 * 7 5 3 38 38 H 1.09001 * 109.47076 * 60.00018 * 8 7 5 39 39 H 1.09003 * 109.46798 * 300.00057 * 8 7 5 40 40 H 1.08993 * 109.47196 * 60.00197 * 9 8 7 41 41 H 1.08998 * 109.46531 * 300.00028 * 9 8 7 42 42 H 1.09000 * 109.60863 * 115.45898 * 13 12 10 43 43 H 1.09004 * 109.60977 * 355.12118 * 13 12 10 44 44 H 1.09000 * 109.46867 * 59.99411 * 16 14 13 45 45 H 1.08992 * 109.47397 * 180.02562 * 16 14 13 46 46 H 1.09004 * 109.46921 * 300.00390 * 16 14 13 47 47 H 0.96998 * 119.99776 * 182.19504 * 21 20 18 48 48 H 1.09006 * 109.46766 * 51.97547 * 28 26 17 49 49 H 1.08999 * 109.47145 * 171.96640 * 28 26 17 50 50 H 1.08993 * 109.47540 * 291.96920 * 28 26 17 51 51 H 1.08995 * 109.54873 * 4.96862 * 29 12 10 52 52 H 1.08997 * 109.71305 * 244.59462 * 29 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4519 0.0000 0.0000 3 6 2.0632 1.1996 0.0000 4 8 1.4014 2.2186 0.0005 5 7 3.4092 1.2701 0.0005 6 6 4.2070 0.0415 0.0005 7 6 4.0743 2.5754 0.0000 8 6 4.3053 3.0307 1.4422 9 6 4.9994 4.3943 1.4416 10 6 5.2275 4.8423 2.8622 11 8 4.8697 4.1406 3.7844 12 7 5.8292 6.0232 3.1080 13 6 6.0576 6.4732 4.4883 14 6 5.4236 7.8582 4.6672 15 1 4.3375 7.7681 4.6517 16 6 5.8734 8.4606 5.9998 17 7 5.8627 8.7219 3.5622 18 6 6.4742 9.9208 3.8154 19 1 7.3466 9.9584 4.4509 20 6 5.9727 11.0877 3.2553 21 7 4.7301 11.1291 2.8231 22 14 7.0612 12.5993 3.1148 23 1 7.7754 12.5757 1.8130 24 1 6.2231 13.8223 3.1976 25 1 8.0507 12.6013 4.2223 26 6 5.6343 8.2758 2.1807 27 1 4.5632 8.2184 1.9872 28 6 6.2793 9.2654 1.2083 29 6 6.2677 6.8911 2.0017 30 1 -0.3633 0.5139 -0.8899 31 1 -0.3634 -1.0276 0.0005 32 1 -0.3634 0.5139 0.8900 33 1 4.4046 -0.2635 1.0282 34 1 3.6587 -0.7479 -0.5136 35 1 5.1514 0.2215 -0.5130 36 1 3.4465 3.3029 -0.5146 37 1 5.0324 2.4947 -0.5136 38 1 4.9331 2.3032 1.9567 39 1 3.3471 3.1113 1.9556 40 1 4.3713 5.1215 0.9273 41 1 5.9575 4.3139 0.9280 42 1 7.1288 6.5335 4.6808 43 1 5.6002 5.7689 5.1832 44 1 6.9593 8.5556 6.0074 45 1 5.4213 9.4444 6.1248 46 1 5.5599 7.8105 6.8166 47 1 4.3894 11.9341 2.4028 48 1 7.3204 9.4248 1.4894 49 1 6.2338 8.8626 0.1965 50 1 5.7434 10.2138 1.2461 51 1 5.9469 6.4622 1.0524 52 1 7.3539 6.9817 2.0138 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000880459421.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:29:42 Heat of formation + Delta-G solvation = -106.192669 kcal Electronic energy + Delta-G solvation = -31128.565015 eV Core-core repulsion = 26935.571986 eV Total energy + Delta-G solvation = -4192.993029 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 341.215 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -41.61538 -41.12293 -39.03329 -38.19355 -36.86508 -35.77371 -34.88723 -34.08180 -33.05940 -29.78943 -29.26497 -28.60513 -27.65730 -27.27797 -26.58315 -25.28830 -23.38939 -22.03083 -21.47715 -21.38254 -20.01379 -19.13549 -18.45058 -18.10279 -17.75678 -17.52559 -17.07657 -16.75104 -16.69380 -16.25465 -15.80179 -15.49093 -15.34518 -15.21431 -14.82423 -14.75982 -14.63234 -13.95522 -13.89033 -13.66141 -13.44213 -13.35372 -13.24968 -13.14925 -12.96621 -12.95159 -12.74869 -12.71018 -12.59310 -12.36527 -12.30338 -12.21229 -12.13538 -11.83475 -11.72796 -11.71963 -11.65064 -11.63158 -11.45696 -10.75437 -10.19421 -9.86515 -9.62830 -8.35339 -7.69151 -5.60392 1.14913 1.46497 1.50951 1.56916 1.65866 1.67151 2.10769 2.51030 2.97016 3.24855 3.52090 3.56308 3.94650 3.97561 4.13892 4.22480 4.29437 4.32923 4.33449 4.35261 4.43227 4.44779 4.53565 4.56212 4.59527 4.64552 4.67009 4.69502 4.74540 4.76368 4.83913 4.94704 4.95926 4.97092 5.03726 5.04951 5.20260 5.22231 5.27288 5.37498 5.43530 5.46069 5.61946 5.68970 5.75974 5.95417 6.20508 6.55396 6.58887 7.16020 7.21147 7.25334 7.78229 8.53234 9.14481 Molecular weight = 341.21amu Principal moments of inertia in cm(-1) A = 0.019535 B = 0.002271 C = 0.002201 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1432.987186 B =12329.103156 C =12720.996309 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.049 3.951 2 O -0.371 6.371 3 C 0.635 3.365 4 O -0.610 6.610 5 N -0.595 5.595 6 C 0.078 3.922 7 C 0.132 3.868 8 C -0.109 4.109 9 C -0.127 4.127 10 C 0.504 3.496 11 O -0.596 6.596 12 N -0.605 5.605 13 C 0.110 3.890 14 C 0.151 3.849 15 H -0.008 1.008 16 C -0.116 4.116 17 N -0.590 5.590 18 C -0.262 4.262 19 H 0.050 0.950 20 C 0.000 4.000 21 N -0.908 5.908 22 Si 0.939 3.061 23 H -0.274 1.274 24 H -0.300 1.300 25 H -0.270 1.270 26 C 0.176 3.824 27 H -0.003 1.003 28 C -0.136 4.136 29 C 0.100 3.900 30 H 0.061 0.939 31 H 0.139 0.861 32 H 0.052 0.948 33 H 0.058 0.942 34 H 0.082 0.918 35 H 0.105 0.895 36 H 0.076 0.924 37 H 0.131 0.869 38 H 0.072 0.928 39 H 0.031 0.969 40 H 0.102 0.898 41 H 0.135 0.865 42 H 0.071 0.929 43 H 0.073 0.927 44 H 0.058 0.942 45 H 0.039 0.961 46 H 0.063 0.937 47 H 0.251 0.749 48 H 0.048 0.952 49 H 0.060 0.940 50 H 0.059 0.941 51 H 0.111 0.889 52 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.014 -21.792 -9.852 24.000 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.045 4.045 2 O -0.285 6.285 3 C 0.390 3.610 4 O -0.502 6.502 5 N -0.335 5.335 6 C -0.063 4.063 7 C 0.011 3.989 8 C -0.148 4.148 9 C -0.167 4.167 10 C 0.294 3.706 11 O -0.478 6.478 12 N -0.336 5.336 13 C -0.014 4.014 14 C 0.045 3.955 15 H 0.010 0.990 16 C -0.174 4.174 17 N -0.315 5.315 18 C -0.392 4.392 19 H 0.067 0.933 20 C -0.200 4.200 21 N -0.549 5.549 22 Si 0.766 3.234 23 H -0.199 1.199 24 H -0.227 1.227 25 H -0.194 1.194 26 C 0.069 3.931 27 H 0.014 0.986 28 C -0.194 4.194 29 C -0.023 4.023 30 H 0.080 0.920 31 H 0.157 0.843 32 H 0.071 0.929 33 H 0.077 0.923 34 H 0.101 0.899 35 H 0.123 0.877 36 H 0.095 0.905 37 H 0.149 0.851 38 H 0.090 0.910 39 H 0.050 0.950 40 H 0.121 0.879 41 H 0.153 0.847 42 H 0.089 0.911 43 H 0.092 0.908 44 H 0.077 0.923 45 H 0.058 0.942 46 H 0.082 0.918 47 H 0.060 0.940 48 H 0.067 0.933 49 H 0.079 0.921 50 H 0.077 0.923 51 H 0.129 0.871 52 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges 1.466 -21.762 -9.422 23.759 hybrid contribution -0.441 1.508 0.386 1.618 sum 1.025 -20.253 -9.036 22.201 Atomic orbital electron populations 1.23471 0.73142 1.05612 1.02270 1.86233 1.25489 1.30017 1.86733 1.18480 0.84149 0.82134 0.76252 1.90992 1.65389 1.36330 1.57449 1.46848 1.01642 1.09990 1.74985 1.22045 0.96726 0.84541 1.02992 1.21684 0.99008 0.82203 0.95977 1.21575 0.99861 0.95872 0.97472 1.21612 1.04845 0.98176 0.92104 1.21386 0.76049 0.80178 0.92964 1.90625 1.53284 1.55599 1.48270 1.48261 1.58421 1.18928 1.08000 1.22002 1.00439 0.95768 0.83208 1.20929 0.93785 0.90252 0.90565 0.99037 1.21520 1.01248 0.99819 0.94773 1.44231 1.69034 1.18787 0.99487 1.18773 1.06018 0.83754 1.30651 0.93308 1.26113 0.94981 0.99477 0.99417 1.70277 1.14131 1.28601 1.41885 0.85755 0.79100 0.79685 0.78839 1.19946 1.22699 1.19416 1.20624 0.94727 0.91973 0.85731 0.98559 1.21863 1.00626 1.00567 0.96357 1.22579 0.99978 0.90623 0.89139 0.92035 0.84310 0.92878 0.92309 0.89947 0.87655 0.90528 0.85081 0.90970 0.94996 0.87948 0.84676 0.91055 0.90825 0.92296 0.94168 0.91789 0.94002 0.93252 0.92140 0.92276 0.87143 0.90402 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.05 0.74 10.56 113.37 1.20 1.93 16 2 O -0.37 -7.61 9.39 -55.51 -0.52 -8.14 16 3 C 0.64 16.07 8.40 129.79 1.09 17.16 16 4 O -0.61 -20.20 15.71 19.82 0.31 -19.88 16 5 N -0.60 -11.25 2.87 -977.29 -2.81 -14.06 16 6 C 0.08 0.84 10.49 127.77 1.34 2.18 16 7 C 0.13 2.26 5.45 86.38 0.47 2.73 16 8 C -0.11 -2.49 4.83 30.59 0.15 -2.34 16 9 C -0.13 -2.85 4.05 29.85 0.12 -2.73 16 10 C 0.50 16.80 7.70 87.65 0.68 17.48 16 11 O -0.60 -24.31 15.39 -3.05 -0.05 -24.36 16 12 N -0.61 -21.00 2.96 -817.26 -2.42 -23.43 16 13 C 0.11 4.15 5.89 86.41 0.51 4.66 16 14 C 0.15 6.63 3.65 45.03 0.16 6.79 16 15 H -0.01 -0.41 8.14 -2.39 -0.02 -0.43 16 16 C -0.12 -4.58 8.18 71.98 0.59 -3.99 16 17 N -0.59 -27.87 2.74 -650.81 -1.78 -29.65 16 18 C -0.26 -13.23 6.61 84.03 0.56 -12.67 16 19 H 0.05 2.50 7.18 -2.91 -0.02 2.48 16 20 C 0.00 -0.02 3.31 84.86 0.28 0.26 16 21 N -0.91 -50.84 11.71 21.65 0.25 -50.59 16 22 Si 0.94 41.60 29.60 68.60 2.03 43.63 16 23 H -0.27 -11.68 7.11 99.48 0.71 -10.98 16 24 H -0.30 -13.70 7.11 99.48 0.71 -13.00 16 25 H -0.27 -11.60 7.11 99.48 0.71 -10.90 16 26 C 0.18 7.41 3.25 45.01 0.15 7.56 16 27 H 0.00 -0.16 8.14 -2.39 -0.02 -0.18 16 28 C -0.14 -5.51 7.84 71.98 0.56 -4.95 16 29 C 0.10 3.16 5.83 86.34 0.50 3.66 16 30 H 0.06 0.94 8.14 -2.39 -0.02 0.92 16 31 H 0.14 0.97 8.14 -2.39 -0.02 0.95 16 32 H 0.05 0.91 8.14 -2.38 -0.02 0.89 16 33 H 0.06 0.65 8.14 -2.39 -0.02 0.63 16 34 H 0.08 0.80 7.38 -2.39 -0.02 0.79 16 35 H 0.10 0.52 7.89 -2.39 -0.02 0.50 16 36 H 0.08 1.55 7.42 -2.39 -0.02 1.53 16 37 H 0.13 1.09 7.89 -2.39 -0.02 1.08 16 38 H 0.07 1.64 8.10 -2.39 -0.02 1.62 16 39 H 0.03 1.00 8.10 -2.39 -0.02 0.98 16 40 H 0.10 2.24 7.73 -2.39 -0.02 2.22 16 41 H 0.14 1.91 7.93 -2.39 -0.02 1.89 16 42 H 0.07 2.53 8.12 -2.39 -0.02 2.51 16 43 H 0.07 2.84 6.99 -2.39 -0.02 2.82 16 44 H 0.06 2.24 7.45 -2.39 -0.02 2.22 16 45 H 0.04 1.77 7.75 -2.39 -0.02 1.75 16 46 H 0.06 2.14 8.14 -2.38 -0.02 2.12 16 47 H 0.25 13.68 8.31 -92.71 -0.77 12.91 16 48 H 0.05 2.00 7.56 -2.38 -0.02 1.98 16 49 H 0.06 1.95 8.14 -2.39 -0.02 1.93 16 50 H 0.06 2.83 4.94 -2.39 -0.01 2.82 16 51 H 0.11 2.60 5.95 -2.39 -0.01 2.58 16 52 H 0.08 2.32 8.11 -2.39 -0.02 2.30 16 Total: -1.00 -76.03 407.66 4.26 -71.77 By element: Atomic # 1 Polarization: 16.08 SS G_CDS: 0.89 Total: 16.96 kcal Atomic # 6 Polarization: 29.37 SS G_CDS: 8.35 Total: 37.73 kcal Atomic # 7 Polarization: -110.96 SS G_CDS: -6.76 Total: -117.72 kcal Atomic # 8 Polarization: -52.12 SS G_CDS: -0.26 Total: -52.38 kcal Atomic # 14 Polarization: 41.60 SS G_CDS: 2.03 Total: 43.63 kcal Total: -76.03 4.26 -71.77 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000880459421.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.420 kcal (2) G-P(sol) polarization free energy of solvation -76.031 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -110.451 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.258 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.773 kcal (6) G-S(sol) free energy of system = (1) + (5) -106.193 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds