Wall clock time and date at job start Wed Apr 1 2020 01:29:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45203 * 1 3 3 C 1.34634 * 116.99973 * 2 1 4 4 O 1.21509 * 120.00394 * 0.02562 * 3 2 1 5 5 N 1.34779 * 120.00137 * 179.97438 * 3 2 1 6 6 C 1.46502 * 119.99530 * 359.97438 * 5 3 2 7 7 C 1.46501 * 120.00322 * 180.02562 * 5 3 2 8 8 C 1.52998 * 109.47041 * 89.99955 * 7 5 3 9 9 C 1.52997 * 109.46891 * 179.97438 * 8 7 5 10 10 C 1.50703 * 109.46985 * 180.02562 * 9 8 7 11 11 O 1.21281 * 120.00187 * 359.97438 * 10 9 8 12 12 N 1.34781 * 119.99886 * 180.02562 * 10 9 8 13 13 C 1.47050 * 120.44987 * 359.88561 * 12 10 9 14 14 C 1.53361 * 108.59486 * 235.05913 * 13 12 10 15 15 H 1.09002 * 109.60993 * 70.67001 * 14 13 12 16 16 C 1.52998 * 109.61321 * 191.00618 * 14 13 12 17 17 N 1.46965 * 108.78192 * 310.84042 * 14 13 12 18 18 C 1.36932 * 120.59292 * 235.12110 * 17 14 13 19 19 H 1.07999 * 120.00771 * 28.68141 * 18 17 14 20 20 C 1.38818 * 119.99796 * 208.68204 * 18 17 14 21 21 N 1.31615 * 119.99953 * 17.34273 * 20 18 17 22 22 Si 1.86808 * 119.99995 * 197.34492 * 20 18 17 23 23 H 1.48500 * 109.47089 * 0.02562 * 22 20 18 24 24 H 1.48501 * 109.46949 * 119.99817 * 22 20 18 25 25 H 1.48494 * 109.47073 * 239.99937 * 22 20 18 26 26 C 1.46970 * 118.81075 * 55.13722 * 17 14 13 27 27 H 1.09001 * 109.60454 * 184.86247 * 26 17 14 28 28 C 1.52998 * 109.60800 * 64.52259 * 26 17 14 29 29 C 1.46965 * 120.59360 * 180.02562 * 12 10 9 30 30 H 1.08995 * 109.46846 * 179.97438 * 1 2 3 31 31 H 1.09000 * 109.47168 * 299.99967 * 1 2 3 32 32 H 1.09008 * 109.46965 * 59.99772 * 1 2 3 33 33 H 1.09000 * 109.47340 * 269.99810 * 6 5 3 34 34 H 1.08997 * 109.47467 * 30.00420 * 6 5 3 35 35 H 1.09002 * 109.46958 * 150.00031 * 6 5 3 36 36 H 1.09000 * 109.46605 * 329.99929 * 7 5 3 37 37 H 1.09000 * 109.47207 * 209.99981 * 7 5 3 38 38 H 1.08997 * 109.47324 * 59.99976 * 8 7 5 39 39 H 1.09000 * 109.47141 * 300.00066 * 8 7 5 40 40 H 1.09003 * 109.47363 * 60.00267 * 9 8 7 41 41 H 1.09000 * 109.47294 * 299.99988 * 9 8 7 42 42 H 1.09003 * 109.47912 * 115.41361 * 13 12 10 43 43 H 1.08997 * 109.76811 * 354.88311 * 13 12 10 44 44 H 1.08998 * 109.47932 * 179.66023 * 16 14 13 45 45 H 1.09005 * 109.47097 * 59.66132 * 16 14 13 46 46 H 1.09004 * 109.46734 * 299.66695 * 16 14 13 47 47 H 0.96998 * 119.99560 * 180.02562 * 21 20 18 48 48 H 1.09002 * 109.47065 * 60.00138 * 28 26 17 49 49 H 1.09005 * 109.46910 * 179.97438 * 28 26 17 50 50 H 1.08996 * 109.46999 * 299.99733 * 28 26 17 51 51 H 1.09003 * 109.61061 * 5.01672 * 29 12 10 52 52 H 1.09000 * 109.74583 * 244.59446 * 29 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0633 1.1996 0.0000 4 8 1.4015 2.2187 0.0005 5 7 3.4092 1.2702 0.0005 6 6 4.2070 0.0415 0.0017 7 6 4.0743 2.5755 0.0011 8 6 4.3053 3.0295 1.4438 9 6 5.0005 4.3924 1.4443 10 6 5.2286 4.8394 2.8654 11 8 4.8700 4.1372 3.7869 12 7 5.8302 6.0200 3.1121 13 6 6.2703 6.8785 2.0023 14 6 7.7627 7.1828 2.1815 15 1 8.3455 6.2821 1.9881 16 6 8.1827 8.2850 1.2071 17 7 7.9917 7.6314 3.5621 18 6 8.6035 8.8305 3.8128 19 1 8.5131 9.6413 3.1051 20 6 9.3399 9.0041 4.9767 21 7 9.7400 7.9558 5.6647 22 14 9.7629 10.7254 5.5664 23 1 9.1999 11.7243 4.6228 24 1 9.1859 10.9415 6.9176 25 1 11.2386 10.8788 5.6281 26 6 7.5527 6.7698 4.6689 27 1 7.7160 7.2812 5.6175 28 6 8.3464 5.4619 4.6473 29 6 6.0597 6.4684 4.4928 30 1 -0.3633 -1.0276 -0.0005 31 1 -0.3633 0.5138 0.8900 32 1 -0.3633 0.5139 -0.8900 33 1 4.4045 -0.2626 1.0296 34 1 3.6588 -0.7483 -0.5119 35 1 5.1516 0.2211 -0.5119 36 1 3.4464 3.3033 -0.5128 37 1 5.0325 2.4953 -0.5124 38 1 4.9331 2.3017 1.9577 39 1 3.3472 3.1097 1.9573 40 1 4.3731 5.1206 0.9303 41 1 5.9587 4.3118 0.9310 42 1 5.7030 7.8091 2.0157 43 1 6.1128 6.3647 1.0540 44 1 9.2421 8.5037 1.3404 45 1 7.5987 9.1845 1.4023 46 1 8.0062 7.9522 0.1842 47 1 10.2542 8.0772 6.4782 48 1 9.4087 5.6798 4.7575 49 1 8.0194 4.8249 5.4692 50 1 8.1768 4.9496 3.7004 51 1 5.7608 5.6829 5.1870 52 1 5.4791 7.3699 4.6885 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000880459422.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:29:47 Heat of formation + Delta-G solvation = -84.743167 kcal Electronic energy + Delta-G solvation = -31219.718158 eV Core-core repulsion = 27027.655248 eV Total energy + Delta-G solvation = -4192.062909 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 341.215 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -40.75316 -39.75130 -37.66138 -37.19040 -35.92747 -34.00347 -33.47301 -32.61573 -31.27439 -28.53880 -27.98832 -27.83429 -26.50387 -26.09778 -25.05661 -23.62579 -22.51523 -20.84087 -20.60426 -19.52628 -18.44015 -18.29151 -17.39214 -16.95824 -16.65792 -16.02569 -15.74198 -15.32035 -15.12572 -14.85008 -14.52131 -14.42897 -14.04565 -13.86238 -13.52889 -13.39179 -13.14043 -13.06141 -12.85211 -12.68662 -12.35370 -12.23163 -11.97808 -11.87111 -11.83628 -11.69214 -11.39757 -11.17152 -11.04138 -11.01599 -10.79691 -10.77323 -10.72202 -10.62640 -10.58806 -10.13477 -10.05752 -9.71397 -9.64814 -9.26451 -9.05847 -8.51988 -8.12250 -6.65713 -5.82391 -3.26680 1.89080 2.57422 3.05520 3.34171 3.42664 3.43736 3.47802 3.67386 4.44036 4.70050 4.71871 4.81821 4.86147 4.93736 4.98924 5.12404 5.17063 5.19051 5.25085 5.33150 5.36150 5.41581 5.45090 5.55034 5.64834 5.70462 5.87517 5.88273 6.03291 6.07218 6.10367 6.14817 6.24232 6.28597 6.30710 6.37655 6.50508 6.63902 6.79063 6.89545 6.91268 7.00902 7.02702 7.08259 7.59051 7.65614 7.80050 7.98694 8.01835 8.40020 8.63838 9.16356 9.78652 10.35333 11.24477 Molecular weight = 341.21amu Principal moments of inertia in cm(-1) A = 0.027115 B = 0.002161 C = 0.002127 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1032.392245 B =12951.339028 C =13160.385825 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.056 3.944 2 O -0.372 6.372 3 C 0.646 3.354 4 O -0.568 6.568 5 N -0.597 5.597 6 C 0.082 3.918 7 C 0.130 3.870 8 C -0.119 4.119 9 C -0.136 4.136 10 C 0.508 3.492 11 O -0.556 6.556 12 N -0.595 5.595 13 C 0.093 3.907 14 C 0.154 3.846 15 H 0.030 0.970 16 C -0.136 4.136 17 N -0.581 5.581 18 C -0.252 4.252 19 H 0.072 0.928 20 C 0.004 3.996 21 N -0.896 5.896 22 Si 0.899 3.101 23 H -0.278 1.278 24 H -0.290 1.290 25 H -0.292 1.292 26 C 0.179 3.821 27 H 0.106 0.894 28 C -0.137 4.137 29 C 0.093 3.907 30 H 0.101 0.899 31 H 0.064 0.936 32 H 0.062 0.938 33 H 0.059 0.941 34 H 0.076 0.924 35 H 0.075 0.925 36 H 0.088 0.912 37 H 0.087 0.913 38 H 0.072 0.928 39 H 0.074 0.926 40 H 0.092 0.908 41 H 0.093 0.907 42 H 0.065 0.935 43 H 0.072 0.928 44 H 0.065 0.935 45 H 0.056 0.944 46 H 0.040 0.960 47 H 0.253 0.747 48 H 0.074 0.926 49 H 0.028 0.972 50 H 0.021 0.979 51 H 0.079 0.921 52 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.431 -13.752 -13.805 22.592 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.039 4.039 2 O -0.286 6.286 3 C 0.400 3.600 4 O -0.457 6.457 5 N -0.337 5.337 6 C -0.060 4.060 7 C 0.009 3.991 8 C -0.158 4.158 9 C -0.176 4.176 10 C 0.296 3.704 11 O -0.436 6.436 12 N -0.326 5.326 13 C -0.032 4.032 14 C 0.046 3.954 15 H 0.048 0.952 16 C -0.194 4.194 17 N -0.303 5.303 18 C -0.382 4.382 19 H 0.090 0.910 20 C -0.195 4.195 21 N -0.540 5.540 22 Si 0.730 3.270 23 H -0.203 1.203 24 H -0.216 1.216 25 H -0.219 1.219 26 C 0.072 3.928 27 H 0.123 0.877 28 C -0.196 4.196 29 C -0.031 4.031 30 H 0.120 0.880 31 H 0.082 0.918 32 H 0.081 0.919 33 H 0.078 0.922 34 H 0.095 0.905 35 H 0.094 0.906 36 H 0.106 0.894 37 H 0.105 0.895 38 H 0.091 0.909 39 H 0.092 0.908 40 H 0.110 0.890 41 H 0.111 0.889 42 H 0.083 0.917 43 H 0.091 0.909 44 H 0.084 0.916 45 H 0.075 0.925 46 H 0.059 0.941 47 H 0.063 0.937 48 H 0.093 0.907 49 H 0.047 0.953 50 H 0.040 0.960 51 H 0.098 0.902 52 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -11.779 -13.814 -13.178 22.433 hybrid contribution 0.272 0.912 0.433 1.045 sum -11.508 -12.902 -12.745 21.478 Atomic orbital electron populations 1.23193 0.74488 1.03391 1.02804 1.86233 1.24121 1.31162 1.87061 1.18093 0.83282 0.82146 0.76457 1.91009 1.64245 1.34887 1.55561 1.46636 1.02219 1.08645 1.76162 1.21819 0.95934 0.85760 1.02529 1.21624 0.97303 0.82461 0.97718 1.21697 1.02144 0.95947 0.96055 1.21560 1.02471 0.98130 0.95451 1.20489 0.77692 0.81059 0.91132 1.90647 1.52235 1.54116 1.46568 1.48040 1.57371 1.18943 1.08288 1.22458 0.98473 0.94075 0.88190 1.20762 0.91224 0.95792 0.87598 0.95205 1.21772 1.02703 0.98715 0.96175 1.44156 1.67881 1.20110 0.98192 1.19201 1.24623 0.88767 1.05576 0.91050 1.25063 0.97401 0.96837 1.00227 1.70014 1.38672 1.27472 1.17848 0.86276 0.77612 0.84544 0.78606 1.20345 1.21648 1.21867 1.20736 0.86890 0.91045 0.94164 0.87651 1.21962 1.03088 0.97039 0.97543 1.22446 1.00278 0.98777 0.81580 0.88019 0.91769 0.91906 0.92216 0.90517 0.90587 0.89353 0.89516 0.90888 0.90756 0.88986 0.88916 0.91669 0.90935 0.91604 0.92526 0.94094 0.93694 0.90712 0.95322 0.96012 0.90242 0.92455 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.41 10.56 101.05 1.07 1.48 16 2 O -0.37 -3.83 9.39 -40.31 -0.38 -4.20 16 3 C 0.65 7.97 8.40 54.06 0.45 8.42 16 4 O -0.57 -8.71 15.71 -19.28 -0.30 -9.01 16 5 N -0.60 -6.03 2.87 -187.41 -0.54 -6.57 16 6 C 0.08 0.57 10.49 59.85 0.63 1.20 16 7 C 0.13 1.23 5.45 -4.04 -0.02 1.21 16 8 C -0.12 -1.44 4.83 -26.73 -0.13 -1.57 16 9 C -0.14 -1.65 4.04 -27.88 -0.11 -1.76 16 10 C 0.51 8.77 7.70 -10.98 -0.08 8.69 16 11 O -0.56 -11.52 15.39 5.56 0.09 -11.44 16 12 N -0.59 -10.66 2.60 -172.45 -0.45 -11.11 16 13 C 0.09 1.48 5.82 -3.56 -0.02 1.46 16 14 C 0.15 2.89 3.22 -67.49 -0.22 2.68 16 15 H 0.03 0.60 7.41 -51.93 -0.38 0.22 16 16 C -0.14 -2.26 7.94 37.16 0.29 -1.97 16 17 N -0.58 -13.30 2.69 -157.05 -0.42 -13.73 16 18 C -0.25 -6.34 8.59 -15.06 -0.13 -6.47 16 19 H 0.07 1.76 6.21 -52.49 -0.33 1.43 16 20 C 0.00 0.09 4.91 -17.43 -0.09 0.01 16 21 N -0.90 -24.44 10.16 55.49 0.56 -23.88 16 22 Si 0.90 20.84 29.59 -169.99 -5.03 15.81 16 23 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 24 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 25 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 26 C 0.18 4.07 2.35 -67.51 -0.16 3.91 16 27 H 0.11 2.73 6.01 -51.93 -0.31 2.41 16 28 C -0.14 -3.09 8.94 37.16 0.33 -2.76 16 29 C 0.09 1.88 5.97 -3.62 -0.02 1.86 16 30 H 0.10 0.42 8.14 -51.93 -0.42 -0.01 16 31 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 32 H 0.06 0.45 8.14 -51.92 -0.42 0.02 16 33 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 34 H 0.08 0.48 7.37 -51.93 -0.38 0.09 16 35 H 0.08 0.38 7.89 -51.93 -0.41 -0.03 16 36 H 0.09 0.90 7.42 -51.93 -0.39 0.51 16 37 H 0.09 0.58 7.89 -51.93 -0.41 0.17 16 38 H 0.07 0.93 8.10 -51.93 -0.42 0.51 16 39 H 0.07 1.11 8.10 -51.93 -0.42 0.69 16 40 H 0.09 0.98 7.91 -51.93 -0.41 0.57 16 41 H 0.09 0.95 7.71 -51.93 -0.40 0.55 16 42 H 0.06 1.04 8.12 -51.93 -0.42 0.62 16 43 H 0.07 0.90 5.91 -51.93 -0.31 0.59 16 44 H 0.06 1.22 7.69 -51.93 -0.40 0.82 16 45 H 0.06 0.96 7.36 -51.93 -0.38 0.58 16 46 H 0.04 0.54 8.14 -51.93 -0.42 0.12 16 47 H 0.25 6.77 8.31 -40.82 -0.34 6.43 16 48 H 0.07 1.87 7.19 -51.93 -0.37 1.50 16 49 H 0.03 0.61 8.14 -51.93 -0.42 0.18 16 50 H 0.02 0.46 7.02 -51.93 -0.36 0.09 16 51 H 0.08 1.66 6.97 -51.93 -0.36 1.29 16 52 H 0.06 1.15 8.14 -51.93 -0.42 0.73 16 LS Contribution 406.48 15.07 6.13 6.13 Total: -1.00 -32.76 406.48 -7.52 -40.28 By element: Atomic # 1 Polarization: 10.31 SS G_CDS: -8.97 Total: 1.34 kcal Atomic # 6 Polarization: 14.58 SS G_CDS: 1.79 Total: 16.38 kcal Atomic # 7 Polarization: -54.43 SS G_CDS: -0.84 Total: -55.28 kcal Atomic # 8 Polarization: -24.06 SS G_CDS: -0.60 Total: -24.65 kcal Atomic # 14 Polarization: 20.84 SS G_CDS: -5.03 Total: 15.81 kcal Total LS contribution 6.13 Total: 6.13 kcal Total: -32.76 -7.52 -40.28 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000880459422.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.466 kcal (2) G-P(sol) polarization free energy of solvation -32.760 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.227 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.516 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.277 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.743 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds