Wall clock time and date at job start Wed Apr 1 2020 01:29:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45202 * 1 3 3 C 1.34639 * 116.99887 * 2 1 4 4 O 1.21512 * 120.00020 * 0.02562 * 3 2 1 5 5 N 1.34774 * 119.99853 * 179.97438 * 3 2 1 6 6 C 1.46499 * 120.00264 * 0.02562 * 5 3 2 7 7 C 1.46505 * 119.99769 * 180.02562 * 5 3 2 8 8 C 1.53001 * 109.47304 * 90.00285 * 7 5 3 9 9 C 1.52994 * 109.47158 * 179.97438 * 8 7 5 10 10 C 1.50705 * 109.46890 * 180.02562 * 9 8 7 11 11 O 1.21278 * 119.99860 * 359.97438 * 10 9 8 12 12 N 1.34779 * 119.99613 * 179.97438 * 10 9 8 13 13 C 1.46969 * 120.58904 * 179.97438 * 12 10 9 14 14 C 1.53367 * 108.63583 * 235.20515 * 13 12 10 15 15 H 1.08995 * 109.61506 * 190.83532 * 14 13 12 16 16 C 1.53005 * 109.60984 * 70.32191 * 14 13 12 17 17 N 1.46965 * 108.63561 * 310.58227 * 14 13 12 18 18 C 1.36941 * 120.59336 * 235.20389 * 17 14 13 19 19 H 1.07996 * 120.00331 * 150.93985 * 18 17 14 20 20 C 1.38814 * 119.99761 * 330.93904 * 18 17 14 21 21 N 1.31617 * 120.00187 * 343.14146 * 20 18 17 22 22 Si 1.86804 * 120.00138 * 163.14277 * 20 18 17 23 23 H 1.48502 * 109.46846 * 359.97438 * 22 20 18 24 24 H 1.48498 * 109.47284 * 119.99408 * 22 20 18 25 25 H 1.48490 * 109.46970 * 240.00146 * 22 20 18 26 26 C 1.46966 * 118.81521 * 55.47517 * 17 14 13 27 27 H 1.08997 * 109.60482 * 64.27030 * 26 17 14 28 28 C 1.52997 * 109.60960 * 184.78041 * 26 17 14 29 29 C 1.46965 * 120.59492 * 359.97438 * 12 10 9 30 30 H 1.09003 * 109.47045 * 59.99955 * 1 2 3 31 31 H 1.08998 * 109.46812 * 179.97438 * 1 2 3 32 32 H 1.08995 * 109.47303 * 299.99991 * 1 2 3 33 33 H 1.09002 * 109.46448 * 269.99869 * 6 5 3 34 34 H 1.08996 * 109.47323 * 29.99062 * 6 5 3 35 35 H 1.08995 * 109.47179 * 149.99925 * 6 5 3 36 36 H 1.09001 * 109.47264 * 330.00350 * 7 5 3 37 37 H 1.09005 * 109.46917 * 210.00197 * 7 5 3 38 38 H 1.09001 * 109.46907 * 59.99847 * 8 7 5 39 39 H 1.08999 * 109.47081 * 300.00238 * 8 7 5 40 40 H 1.09001 * 109.47244 * 60.00166 * 9 8 7 41 41 H 1.09005 * 109.47083 * 299.99924 * 9 8 7 42 42 H 1.08999 * 109.60281 * 115.46392 * 13 12 10 43 43 H 1.08996 * 109.75181 * 355.03481 * 13 12 10 44 44 H 1.08994 * 109.47042 * 300.85854 * 16 14 13 45 45 H 1.09001 * 109.46824 * 60.85927 * 16 14 13 46 46 H 1.09004 * 109.47168 * 180.85574 * 16 14 13 47 47 H 0.97006 * 120.00298 * 184.79097 * 21 20 18 48 48 H 1.09001 * 109.47465 * 61.54014 * 28 26 17 49 49 H 1.09003 * 109.47166 * 181.53953 * 28 26 17 50 50 H 1.09004 * 109.47246 * 301.53804 * 28 26 17 51 51 H 1.09000 * 109.60546 * 244.53767 * 29 12 10 52 52 H 1.08998 * 109.61262 * 4.87933 * 29 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0632 1.1997 0.0000 4 8 1.4014 2.2187 0.0005 5 7 3.4091 1.2702 0.0005 6 6 4.2071 0.0416 0.0005 7 6 4.0742 2.5756 0.0011 8 6 4.3053 3.0297 1.4438 9 6 5.0004 4.3926 1.4443 10 6 5.2285 4.8395 2.8654 11 8 4.8700 4.1372 3.7869 12 7 5.8310 6.0196 3.1121 13 6 6.0595 6.4685 4.4928 14 6 5.4273 7.8547 4.6685 15 1 5.7479 8.2855 5.6169 16 6 3.9024 7.7301 4.6464 17 7 5.8678 8.7154 3.5617 18 6 6.4799 9.9145 3.8125 19 1 7.1945 10.3137 3.1080 20 6 6.1819 10.6167 4.9722 21 7 5.0985 10.3230 5.6594 22 14 7.3184 11.9788 5.5574 23 1 8.4588 12.1108 4.6154 24 1 6.5693 13.2599 5.6109 25 1 7.8311 11.6482 6.9112 26 6 5.6342 8.2692 2.1811 27 1 4.5624 8.2093 1.9925 28 6 6.2763 9.2582 1.2062 29 6 6.2712 6.8805 2.0054 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3633 -1.0277 -0.0005 32 1 -0.3633 0.5138 0.8899 33 1 4.4045 -0.2633 1.0282 34 1 3.6588 -0.7478 -0.5135 35 1 5.1515 0.2217 -0.5129 36 1 3.4463 3.3035 -0.5127 37 1 5.0324 2.4954 -0.5125 38 1 4.9332 2.3017 1.9576 39 1 3.3472 3.1098 1.9573 40 1 4.3729 5.1207 0.9304 41 1 5.9586 4.3120 0.9309 42 1 7.1307 6.5279 4.6855 43 1 5.6009 5.7663 5.1890 44 1 3.5874 7.2920 3.6995 45 1 3.5782 7.0914 5.4681 46 1 3.4556 8.7183 4.7562 47 1 4.8530 10.8583 6.4303 48 1 7.3526 9.2885 1.3756 49 1 6.0784 8.9399 0.1827 50 1 5.8553 10.2509 1.3658 51 1 7.3575 6.9693 2.0208 52 1 5.9529 6.4483 1.0567 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000880459423.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:29:49 Heat of formation + Delta-G solvation = -105.330659 kcal Electronic energy + Delta-G solvation = -31279.794528 eV Core-core repulsion = 27086.838878 eV Total energy + Delta-G solvation = -4192.955650 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 341.215 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -41.60482 -41.15921 -39.01428 -38.17550 -36.84833 -35.64114 -34.61227 -34.03893 -33.07534 -29.77683 -29.36178 -28.59133 -27.73820 -27.25965 -26.35880 -25.35790 -23.58006 -22.37350 -21.43941 -21.07638 -19.93609 -19.12617 -18.41667 -18.08925 -17.70020 -17.54723 -16.87025 -16.85968 -16.70879 -15.79921 -15.69137 -15.58478 -15.33326 -15.16299 -14.91677 -14.83049 -14.40114 -14.12882 -13.87871 -13.61491 -13.55519 -13.39603 -13.14459 -13.05575 -12.95769 -12.87992 -12.81573 -12.72533 -12.55759 -12.36564 -12.27955 -12.24091 -11.96688 -11.82527 -11.75689 -11.70228 -11.64250 -11.49434 -11.36590 -10.71094 -10.47397 -9.85252 -9.67306 -8.47740 -7.79607 -5.23950 1.16293 1.47459 1.51646 1.59501 1.67791 1.72208 2.14710 2.55067 2.98040 3.35368 3.55205 3.59231 3.96745 3.99306 4.19257 4.21463 4.29600 4.33291 4.34130 4.38510 4.45844 4.47289 4.52667 4.59948 4.63950 4.66537 4.68608 4.73658 4.74602 4.77537 4.81049 4.95176 4.96868 4.97708 5.05006 5.10346 5.18856 5.21991 5.28714 5.37795 5.47076 5.47962 5.60455 5.73556 5.76555 5.84551 6.21441 6.48139 6.61775 7.17005 7.21464 7.27655 7.92119 8.44908 9.26650 Molecular weight = 341.21amu Principal moments of inertia in cm(-1) A = 0.023431 B = 0.002237 C = 0.002203 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1194.720430 B =12513.213493 C =12708.577309 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.049 3.951 2 O -0.372 6.372 3 C 0.635 3.365 4 O -0.609 6.609 5 N -0.596 5.596 6 C 0.078 3.922 7 C 0.133 3.867 8 C -0.110 4.110 9 C -0.126 4.126 10 C 0.502 3.498 11 O -0.598 6.598 12 N -0.599 5.599 13 C 0.105 3.895 14 C 0.183 3.817 15 H 0.069 0.931 16 C -0.120 4.120 17 N -0.595 5.595 18 C -0.245 4.245 19 H 0.080 0.920 20 C -0.051 4.051 21 N -0.930 5.930 22 Si 0.958 3.042 23 H -0.264 1.264 24 H -0.300 1.300 25 H -0.299 1.299 26 C 0.143 3.857 27 H 0.015 0.985 28 C -0.126 4.126 29 C 0.101 3.899 30 H 0.062 0.938 31 H 0.138 0.862 32 H 0.052 0.948 33 H 0.057 0.943 34 H 0.082 0.918 35 H 0.106 0.894 36 H 0.079 0.921 37 H 0.132 0.868 38 H 0.068 0.932 39 H 0.030 0.970 40 H 0.108 0.892 41 H 0.137 0.863 42 H 0.060 0.940 43 H 0.066 0.934 44 H 0.024 0.976 45 H 0.027 0.973 46 H 0.043 0.957 47 H 0.245 0.755 48 H 0.057 0.943 49 H 0.083 0.917 50 H 0.039 0.961 51 H 0.076 0.924 52 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.752 -20.512 -17.202 26.781 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.045 4.045 2 O -0.286 6.286 3 C 0.390 3.610 4 O -0.501 6.501 5 N -0.335 5.335 6 C -0.063 4.063 7 C 0.012 3.988 8 C -0.149 4.149 9 C -0.165 4.165 10 C 0.292 3.708 11 O -0.480 6.480 12 N -0.330 5.330 13 C -0.020 4.020 14 C 0.075 3.925 15 H 0.087 0.913 16 C -0.179 4.179 17 N -0.318 5.318 18 C -0.375 4.375 19 H 0.098 0.902 20 C -0.247 4.247 21 N -0.576 5.576 22 Si 0.788 3.212 23 H -0.188 1.188 24 H -0.227 1.227 25 H -0.226 1.226 26 C 0.036 3.964 27 H 0.033 0.967 28 C -0.184 4.184 29 C -0.023 4.023 30 H 0.080 0.920 31 H 0.156 0.844 32 H 0.071 0.929 33 H 0.075 0.925 34 H 0.100 0.900 35 H 0.124 0.876 36 H 0.097 0.903 37 H 0.150 0.850 38 H 0.087 0.913 39 H 0.049 0.951 40 H 0.126 0.874 41 H 0.154 0.846 42 H 0.078 0.922 43 H 0.085 0.915 44 H 0.043 0.957 45 H 0.046 0.954 46 H 0.062 0.938 47 H 0.054 0.946 48 H 0.076 0.924 49 H 0.102 0.898 50 H 0.058 0.942 51 H 0.094 0.906 52 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges 0.322 -20.570 -16.593 26.431 hybrid contribution -0.326 1.318 1.433 1.974 sum -0.004 -19.252 -15.161 24.505 Atomic orbital electron populations 1.23467 0.73146 1.05587 1.02280 1.86235 1.25492 1.30098 1.86734 1.18481 0.84157 0.82125 0.76255 1.90988 1.65371 1.36271 1.57449 1.46857 1.01631 1.10030 1.74970 1.22038 0.96752 0.84609 1.02904 1.21696 0.99044 0.82170 0.95885 1.21583 0.99816 0.96055 0.97493 1.21619 1.04914 0.98125 0.91888 1.21455 0.76167 0.80176 0.93007 1.90634 1.53266 1.55584 1.48511 1.48111 1.58267 1.19042 1.07610 1.22050 0.99746 0.96654 0.83549 1.20513 0.91613 0.87386 0.92977 0.91273 1.21760 0.98962 0.99559 0.97586 1.44408 1.68816 1.18611 1.00007 1.19517 1.16184 0.97142 1.04705 0.90236 1.25768 0.97762 1.00494 1.00631 1.70116 1.24763 1.41439 1.21331 0.85331 0.79128 0.78979 0.77733 1.18823 1.22718 1.22619 1.21146 0.96025 0.93453 0.85748 0.96714 1.21682 1.00535 0.98302 0.97904 1.22565 0.99861 0.90525 0.89314 0.91956 0.84387 0.92908 0.92477 0.89977 0.87596 0.90277 0.85044 0.91313 0.95089 0.87418 0.84551 0.92164 0.91511 0.95686 0.95373 0.93780 0.94554 0.92429 0.89798 0.94162 0.90572 0.86266 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.05 0.72 10.56 113.37 1.20 1.92 16 2 O -0.37 -7.48 9.39 -55.48 -0.52 -8.00 16 3 C 0.64 15.62 8.40 129.79 1.09 16.71 16 4 O -0.61 -19.56 15.71 19.80 0.31 -19.25 16 5 N -0.60 -10.80 2.87 -977.25 -2.81 -13.61 16 6 C 0.08 0.81 10.49 127.77 1.34 2.15 16 7 C 0.13 2.10 5.45 86.38 0.47 2.57 16 8 C -0.11 -2.43 4.83 30.59 0.15 -2.28 16 9 C -0.13 -2.58 4.04 29.85 0.12 -2.46 16 10 C 0.50 16.38 7.70 87.66 0.67 17.06 16 11 O -0.60 -24.76 15.39 -3.02 -0.05 -24.81 16 12 N -0.60 -20.32 2.59 -817.21 -2.12 -22.44 16 13 C 0.10 4.26 5.96 86.41 0.52 4.77 16 14 C 0.18 8.64 2.34 45.03 0.11 8.75 16 15 H 0.07 3.79 6.04 -2.39 -0.01 3.78 16 16 C -0.12 -5.75 8.94 71.98 0.64 -5.11 16 17 N -0.60 -27.50 2.68 -649.94 -1.74 -29.24 16 18 C -0.25 -12.39 8.54 84.03 0.72 -11.68 16 19 H 0.08 3.83 6.26 -2.91 -0.02 3.81 16 20 C -0.05 -2.75 4.91 84.86 0.42 -2.33 16 21 N -0.93 -53.39 10.14 21.65 0.22 -53.17 16 22 Si 0.96 43.82 29.59 68.60 2.03 45.85 16 23 H -0.26 -11.30 7.11 99.48 0.71 -10.59 16 24 H -0.30 -13.96 7.11 99.48 0.71 -13.26 16 25 H -0.30 -13.97 7.11 99.48 0.71 -13.26 16 26 C 0.14 5.17 3.25 45.17 0.15 5.32 16 27 H 0.02 0.60 7.38 -2.39 -0.02 0.58 16 28 C -0.13 -3.89 7.95 71.98 0.57 -3.32 16 29 C 0.10 2.82 5.84 86.56 0.51 3.32 16 30 H 0.06 0.92 8.14 -2.39 -0.02 0.90 16 31 H 0.14 0.94 8.14 -2.39 -0.02 0.92 16 32 H 0.05 0.89 8.14 -2.39 -0.02 0.87 16 33 H 0.06 0.63 8.14 -2.39 -0.02 0.61 16 34 H 0.08 0.77 7.37 -2.39 -0.02 0.75 16 35 H 0.11 0.46 7.89 -2.39 -0.02 0.44 16 36 H 0.08 1.46 7.42 -2.39 -0.02 1.44 16 37 H 0.13 0.91 7.89 -2.38 -0.02 0.89 16 38 H 0.07 1.55 8.10 -2.39 -0.02 1.53 16 39 H 0.03 0.95 8.10 -2.39 -0.02 0.93 16 40 H 0.11 2.02 7.72 -2.39 -0.02 2.00 16 41 H 0.14 1.64 7.91 -2.38 -0.02 1.63 16 42 H 0.06 2.39 8.14 -2.39 -0.02 2.37 16 43 H 0.07 2.87 6.98 -2.39 -0.02 2.85 16 44 H 0.02 1.13 7.00 -2.39 -0.02 1.12 16 45 H 0.03 1.29 8.14 -2.39 -0.02 1.27 16 46 H 0.04 2.36 7.18 -2.39 -0.02 2.35 16 47 H 0.25 13.92 8.32 -92.70 -0.77 13.15 16 48 H 0.06 1.75 7.47 -2.39 -0.02 1.73 16 49 H 0.08 1.86 8.14 -2.39 -0.02 1.84 16 50 H 0.04 1.44 7.59 -2.38 -0.02 1.43 16 51 H 0.08 2.04 8.12 -2.39 -0.02 2.02 16 52 H 0.12 2.22 5.91 -2.39 -0.01 2.21 16 Total: -1.00 -77.87 406.52 4.88 -72.99 By element: Atomic # 1 Polarization: 15.40 SS G_CDS: 0.89 Total: 16.30 kcal Atomic # 6 Polarization: 26.72 SS G_CDS: 8.66 Total: 35.38 kcal Atomic # 7 Polarization: -112.00 SS G_CDS: -6.45 Total: -118.45 kcal Atomic # 8 Polarization: -51.80 SS G_CDS: -0.26 Total: -52.06 kcal Atomic # 14 Polarization: 43.82 SS G_CDS: 2.03 Total: 45.85 kcal Total: -77.87 4.88 -72.99 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000880459423.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.344 kcal (2) G-P(sol) polarization free energy of solvation -77.870 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -110.213 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.883 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.987 kcal (6) G-S(sol) free energy of system = (1) + (5) -105.331 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds