Wall clock time and date at job start Wed Apr 1 2020 01:30:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08998 * 109.60805 * 2 1 4 4 C 1.53373 * 109.60735 * 120.34033 * 2 1 3 5 5 N 1.46968 * 108.63410 * 70.32499 * 4 2 1 6 6 C 1.34783 * 120.59146 * 235.20713 * 5 4 2 7 7 O 1.21281 * 119.99948 * 359.97438 * 6 5 4 8 8 C 1.50697 * 120.00078 * 179.97438 * 6 5 4 9 9 N 1.46498 * 109.47142 * 179.97438 * 8 6 5 10 10 C 1.34779 * 120.00145 * 180.02562 * 9 8 6 11 11 O 1.21513 * 119.99882 * 0.02562 * 10 9 8 12 12 O 1.34636 * 120.00061 * 180.02562 * 10 9 8 13 13 C 1.45195 * 116.99944 * 180.02562 * 12 10 9 14 14 C 1.53003 * 109.47489 * 59.99443 * 13 12 10 15 15 C 1.53002 * 109.47130 * 179.97438 * 13 12 10 16 16 C 1.52999 * 109.46946 * 299.99715 * 13 12 10 17 17 C 1.46961 * 118.81451 * 55.47391 * 5 4 2 18 18 C 1.53816 * 108.40181 * 304.48379 * 17 5 4 19 19 H 1.08997 * 109.88325 * 289.76950 * 18 17 5 20 20 C 1.52995 * 109.53434 * 169.30168 * 18 17 5 21 21 N 1.46965 * 109.60799 * 239.48594 * 2 1 3 22 22 C 1.36940 * 120.59363 * 115.50853 * 21 2 1 23 23 H 1.07997 * 120.00295 * 150.94429 * 22 21 2 24 24 C 1.38811 * 119.99665 * 330.94899 * 22 21 2 25 25 N 1.31618 * 120.00055 * 343.12104 * 24 22 21 26 26 Si 1.86803 * 119.99949 * 163.12546 * 24 22 21 27 27 H 1.48507 * 109.47035 * 89.99661 * 26 24 22 28 28 H 1.48494 * 109.47360 * 209.99323 * 26 24 22 29 29 H 1.48495 * 109.47363 * 329.99896 * 26 24 22 30 30 H 1.08998 * 109.47419 * 299.66367 * 1 2 3 31 31 H 1.09001 * 109.46884 * 59.66005 * 1 2 3 32 32 H 1.09001 * 109.47553 * 179.65411 * 1 2 3 33 33 H 1.08994 * 109.61282 * 310.57586 * 4 2 1 34 34 H 1.09000 * 109.60698 * 190.06193 * 4 2 1 35 35 H 1.08998 * 109.46879 * 299.99360 * 8 6 5 36 36 H 1.09006 * 109.47015 * 59.99435 * 8 6 5 37 37 H 0.97001 * 120.00128 * 359.97438 * 9 8 6 38 38 H 1.09005 * 109.46815 * 59.99864 * 14 13 12 39 39 H 1.08994 * 109.47180 * 180.02562 * 14 13 12 40 40 H 1.09005 * 109.46826 * 300.00525 * 14 13 12 41 41 H 1.08999 * 109.46949 * 59.99698 * 15 13 12 42 42 H 1.09004 * 109.46933 * 179.97438 * 15 13 12 43 43 H 1.09000 * 109.47017 * 299.99518 * 15 13 12 44 44 H 1.09005 * 109.47477 * 60.00044 * 16 13 12 45 45 H 1.09004 * 109.47446 * 180.02562 * 16 13 12 46 46 H 1.08996 * 109.47485 * 299.99942 * 16 13 12 47 47 H 1.08990 * 109.61111 * 64.26969 * 17 5 4 48 48 H 1.09007 * 109.61026 * 184.77981 * 17 5 4 49 49 H 1.09001 * 109.47298 * 302.51928 * 20 18 17 50 50 H 1.08994 * 109.46867 * 62.52392 * 20 18 17 51 51 H 1.09005 * 109.46966 * 182.51697 * 20 18 17 52 52 H 0.97003 * 119.99853 * 184.58365 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8958 1.0268 0.0000 4 6 2.0447 -0.7298 1.2469 5 7 1.7606 -2.1645 1.1021 6 6 1.0604 -2.8238 2.0464 7 8 0.6591 -2.2332 3.0267 8 6 0.7762 -4.2948 1.8841 9 7 0.0066 -4.7734 3.0350 10 6 -0.3637 -6.0673 3.1072 11 8 -0.0588 -6.8370 2.2178 12 8 -1.0715 -6.5070 4.1647 13 6 -1.4353 -7.9126 4.1760 14 6 -0.1671 -8.7680 4.1457 15 6 -2.2294 -8.2237 5.4463 16 6 -2.2922 -8.2275 2.9483 17 6 2.2586 -2.8686 -0.0878 18 6 1.7391 -2.1376 -1.3375 19 1 0.6642 -2.2895 -1.4358 20 6 2.4499 -2.6791 -2.5794 21 7 2.0232 -0.7029 -1.1927 22 6 2.7353 -0.0333 -2.1517 23 1 3.4696 -0.5585 -2.7443 24 6 2.5132 1.3207 -2.3621 25 7 1.4196 1.8880 -1.8989 26 14 3.7665 2.3377 -3.3026 27 1 3.4380 2.3125 -4.7507 28 1 3.7353 3.7390 -2.8123 29 1 5.1225 1.7699 -3.0928 30 1 -0.3634 0.5086 0.8929 31 1 -0.3633 0.5191 -0.8869 32 1 -0.3634 -1.0276 -0.0062 33 1 1.5383 -0.3441 2.1317 34 1 3.1198 -0.5777 1.3421 35 1 0.2029 -4.4555 0.9711 36 1 1.7170 -4.8421 1.8235 37 1 -0.2359 -4.1592 3.7456 38 1 0.4435 -8.5436 5.0204 39 1 -0.4402 -9.8231 4.1537 40 1 0.3991 -8.5464 3.2410 41 1 -3.1329 -7.6143 5.4682 42 1 -2.5029 -9.2788 5.4545 43 1 -1.6186 -7.9995 6.3207 44 1 -1.7261 -8.0060 2.0435 45 1 -2.5657 -9.2826 2.9569 46 1 -3.1957 -7.6182 2.9698 47 1 3.3485 -2.8652 -0.0855 48 1 1.8935 -3.8957 -0.0847 49 1 3.5268 -2.5565 -2.4641 50 1 2.2154 -3.7366 -2.7001 51 1 2.1137 -2.1298 -3.4589 52 1 1.2320 2.8177 -2.1024 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000880460307.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:30:05 Heat of formation + Delta-G solvation = -85.866016 kcal Electronic energy + Delta-G solvation = -31621.347212 eV Core-core repulsion = 27429.235613 eV Total energy + Delta-G solvation = -4192.111599 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 341.215 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -40.94245 -39.92490 -37.80190 -37.14677 -34.75320 -34.17539 -33.97594 -32.75136 -31.41991 -28.47139 -27.88189 -27.65814 -27.60107 -26.31075 -25.19014 -23.68269 -22.44378 -20.94092 -20.37966 -19.81296 -18.74321 -18.30291 -16.93384 -16.58326 -16.48048 -16.07744 -15.79605 -15.37830 -15.13058 -14.82902 -14.57346 -14.34950 -14.07398 -13.73325 -13.65056 -13.38576 -13.34125 -12.89245 -12.73918 -12.58509 -12.29761 -12.13452 -12.12483 -12.04376 -11.78857 -11.64169 -11.60452 -11.52742 -11.22741 -11.04659 -10.81781 -10.69206 -10.64114 -10.56180 -10.23532 -10.18618 -10.12294 -9.85175 -9.75889 -9.43514 -9.35889 -8.56609 -8.29941 -6.68488 -5.86722 -3.29968 1.94892 2.68044 2.77883 3.28757 3.32019 3.40630 3.41561 4.04523 4.39836 4.47288 4.51844 4.53218 4.66011 5.07990 5.18874 5.21209 5.24213 5.29004 5.29405 5.41097 5.43818 5.53356 5.55598 5.56824 5.62099 5.73190 5.79901 5.89113 5.98703 6.06137 6.10137 6.17913 6.19661 6.21490 6.29407 6.38917 6.43526 6.55280 6.69002 6.81790 6.88138 6.96507 7.01440 7.32894 7.52159 7.59885 7.71918 7.80703 8.25480 8.32019 8.37347 9.12612 9.74490 10.30875 11.21507 Molecular weight = 341.21amu Principal moments of inertia in cm(-1) A = 0.026901 B = 0.002338 C = 0.002254 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1040.614607 B =11974.531442 C =12416.738191 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C 0.180 3.820 3 H 0.108 0.892 4 C 0.092 3.908 5 N -0.585 5.585 6 C 0.504 3.496 7 O -0.551 6.551 8 C 0.120 3.880 9 N -0.697 5.697 10 C 0.654 3.346 11 O -0.571 6.571 12 O -0.363 6.363 13 C 0.136 3.864 14 C -0.184 4.184 15 C -0.141 4.141 16 C -0.184 4.184 17 C 0.088 3.912 18 C 0.154 3.846 19 H 0.033 0.967 20 C -0.137 4.137 21 N -0.580 5.580 22 C -0.255 4.255 23 H 0.071 0.929 24 C 0.006 3.994 25 N -0.898 5.898 26 Si 0.901 3.099 27 H -0.288 1.288 28 H -0.290 1.290 29 H -0.280 1.280 30 H 0.028 0.972 31 H 0.075 0.925 32 H 0.021 0.979 33 H 0.082 0.918 34 H 0.062 0.938 35 H 0.101 0.899 36 H 0.099 0.901 37 H 0.417 0.583 38 H 0.059 0.941 39 H 0.069 0.931 40 H 0.088 0.912 41 H 0.067 0.933 42 H 0.080 0.920 43 H 0.066 0.934 44 H 0.089 0.911 45 H 0.069 0.931 46 H 0.060 0.940 47 H 0.071 0.929 48 H 0.073 0.927 49 H 0.055 0.945 50 H 0.041 0.959 51 H 0.067 0.933 52 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.682 -17.700 10.250 20.783 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C 0.073 3.927 3 H 0.126 0.874 4 C -0.031 4.031 5 N -0.316 5.316 6 C 0.290 3.710 7 O -0.431 6.431 8 C -0.006 4.006 9 N -0.360 5.360 10 C 0.407 3.593 11 O -0.460 6.460 12 O -0.278 6.278 13 C 0.099 3.901 14 C -0.241 4.241 15 C -0.198 4.198 16 C -0.241 4.241 17 C -0.037 4.037 18 C 0.047 3.953 19 H 0.051 0.949 20 C -0.195 4.195 21 N -0.303 5.303 22 C -0.384 4.384 23 H 0.089 0.911 24 C -0.193 4.193 25 N -0.542 5.542 26 Si 0.731 3.269 27 H -0.215 1.215 28 H -0.216 1.216 29 H -0.205 1.205 30 H 0.048 0.952 31 H 0.094 0.906 32 H 0.040 0.960 33 H 0.100 0.900 34 H 0.080 0.920 35 H 0.119 0.881 36 H 0.117 0.883 37 H 0.255 0.745 38 H 0.078 0.922 39 H 0.088 0.912 40 H 0.107 0.893 41 H 0.086 0.914 42 H 0.098 0.902 43 H 0.085 0.915 44 H 0.108 0.892 45 H 0.088 0.912 46 H 0.079 0.921 47 H 0.090 0.910 48 H 0.092 0.908 49 H 0.074 0.926 50 H 0.060 0.940 51 H 0.086 0.914 52 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -3.775 -17.608 10.363 20.777 hybrid contribution 0.442 0.808 -0.344 0.983 sum -3.333 -16.800 10.018 19.842 Atomic orbital electron populations 1.21983 0.98070 0.98558 1.01162 1.20748 0.92401 0.96993 0.82607 0.87449 1.22585 1.00248 0.78614 1.01639 1.47952 1.52344 1.10948 1.20368 1.20236 0.78983 0.88489 0.83279 1.90659 1.53074 1.68882 1.30451 1.21057 0.97620 0.92805 0.89117 1.44337 1.57965 1.07812 1.25844 1.17899 0.77535 0.82981 0.80880 1.90899 1.59962 1.54836 1.40328 1.86311 1.67737 1.30163 1.43543 1.22078 0.95159 0.75921 0.96953 1.22522 0.97464 0.99708 1.04378 1.21862 1.00174 1.02176 0.95587 1.22524 1.00179 1.02227 0.99190 1.22665 0.99557 0.95170 0.86319 1.20845 0.96542 0.86607 0.91351 0.94924 1.21778 1.00717 0.98375 0.98590 1.44164 1.63148 1.02830 1.20155 1.19142 1.13630 0.91503 1.14149 0.91090 1.25089 0.96559 0.98398 0.99253 1.69932 1.23542 1.12883 1.47888 0.86321 0.81371 0.79749 0.79474 1.21490 1.21629 1.20526 0.95247 0.90582 0.96018 0.89956 0.91993 0.88124 0.88315 0.74474 0.92180 0.91175 0.89283 0.91419 0.90157 0.91453 0.89249 0.91178 0.92120 0.91022 0.90840 0.92556 0.93961 0.91392 0.93491 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.02 8.96 37.16 0.33 -2.69 16 2 C 0.18 3.93 2.34 -67.48 -0.16 3.77 16 3 H 0.11 2.68 6.04 -51.93 -0.31 2.37 16 4 C 0.09 1.74 5.96 -3.59 -0.02 1.72 16 5 N -0.59 -9.79 2.60 -172.21 -0.45 -10.23 16 6 C 0.50 8.06 7.77 -10.98 -0.09 7.97 16 7 O -0.55 -10.20 15.07 5.56 0.08 -10.11 16 8 C 0.12 1.57 4.49 -5.20 -0.02 1.55 16 9 N -0.70 -9.18 5.53 -66.47 -0.37 -9.54 16 10 C 0.65 8.81 8.06 54.06 0.44 9.25 16 11 O -0.57 -8.40 11.88 -19.28 -0.23 -8.63 16 12 O -0.36 -4.43 9.94 -40.31 -0.40 -4.83 16 13 C 0.14 1.32 1.13 -90.62 -0.10 1.21 16 14 C -0.18 -1.69 8.37 37.16 0.31 -1.38 16 15 C -0.14 -0.99 8.85 37.16 0.33 -0.66 16 16 C -0.18 -1.74 8.37 37.16 0.31 -1.43 16 17 C 0.09 1.34 5.84 -3.37 -0.02 1.32 16 18 C 0.15 2.84 3.24 -67.25 -0.22 2.62 16 19 H 0.03 0.65 7.38 -51.93 -0.38 0.26 16 20 C -0.14 -2.25 7.94 37.16 0.29 -1.96 16 21 N -0.58 -12.92 2.68 -156.76 -0.42 -13.34 16 22 C -0.25 -6.27 8.55 -15.06 -0.13 -6.40 16 23 H 0.07 1.71 6.25 -52.49 -0.33 1.38 16 24 C 0.01 0.15 4.92 -17.43 -0.09 0.07 16 25 N -0.90 -24.05 10.13 55.49 0.56 -23.49 16 26 Si 0.90 20.49 29.59 -169.99 -5.03 15.46 16 27 H -0.29 -6.62 7.11 56.52 0.40 -6.22 16 28 H -0.29 -6.75 7.11 56.52 0.40 -6.35 16 29 H -0.28 -6.28 7.11 56.52 0.40 -5.88 16 30 H 0.03 0.60 8.14 -51.93 -0.42 0.18 16 31 H 0.08 1.87 7.16 -51.93 -0.37 1.49 16 32 H 0.02 0.45 7.00 -51.93 -0.36 0.08 16 33 H 0.08 1.58 6.97 -51.93 -0.36 1.21 16 34 H 0.06 1.15 8.14 -51.93 -0.42 0.73 16 35 H 0.10 1.27 7.73 -51.93 -0.40 0.87 16 36 H 0.10 1.16 7.90 -51.93 -0.41 0.75 16 37 H 0.42 5.51 7.55 -40.82 -0.31 5.20 16 38 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 39 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 40 H 0.09 1.02 5.88 -51.93 -0.31 0.72 16 41 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 42 H 0.08 0.41 8.14 -51.93 -0.42 -0.02 16 43 H 0.07 0.46 8.14 -51.93 -0.42 0.03 16 44 H 0.09 1.05 5.88 -51.93 -0.31 0.75 16 45 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 46 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 47 H 0.07 1.08 8.12 -51.93 -0.42 0.66 16 48 H 0.07 0.90 5.91 -51.93 -0.31 0.60 16 49 H 0.06 0.93 7.47 -51.93 -0.39 0.54 16 50 H 0.04 0.56 8.14 -51.93 -0.42 0.14 16 51 H 0.07 1.25 7.58 -51.93 -0.39 0.86 16 52 H 0.25 6.73 8.32 -40.82 -0.34 6.39 16 LS Contribution 398.12 15.07 6.00 6.00 Total: -1.00 -28.76 398.12 -7.80 -36.56 By element: Atomic # 1 Polarization: 15.93 SS G_CDS: -8.73 Total: 7.20 kcal Atomic # 6 Polarization: 13.79 SS G_CDS: 1.17 Total: 14.96 kcal Atomic # 7 Polarization: -55.93 SS G_CDS: -0.67 Total: -56.61 kcal Atomic # 8 Polarization: -23.03 SS G_CDS: -0.55 Total: -23.57 kcal Atomic # 14 Polarization: 20.49 SS G_CDS: -5.03 Total: 15.46 kcal Total LS contribution 6.00 Total: 6.00 kcal Total: -28.76 -7.80 -36.56 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000880460307.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -49.306 kcal (2) G-P(sol) polarization free energy of solvation -28.756 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.062 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.804 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.560 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.866 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds