Wall clock time and date at job start Wed Apr 1 2020 01:30:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08998 * 109.60805 * 2 1 4 4 C 1.53373 * 109.60735 * 120.34033 * 2 1 3 5 5 N 1.46968 * 108.63410 * 70.32499 * 4 2 1 6 6 C 1.34783 * 120.59146 * 235.20713 * 5 4 2 7 7 O 1.21281 * 119.99948 * 359.97438 * 6 5 4 8 8 C 1.50697 * 120.00078 * 179.97438 * 6 5 4 9 9 N 1.46498 * 109.47142 * 179.97438 * 8 6 5 10 10 C 1.34779 * 120.00145 * 180.02562 * 9 8 6 11 11 O 1.21513 * 119.99882 * 0.02562 * 10 9 8 12 12 O 1.34636 * 120.00061 * 180.02562 * 10 9 8 13 13 C 1.45195 * 116.99944 * 180.02562 * 12 10 9 14 14 C 1.53003 * 109.47489 * 59.99443 * 13 12 10 15 15 C 1.53002 * 109.47130 * 179.97438 * 13 12 10 16 16 C 1.52999 * 109.46946 * 299.99715 * 13 12 10 17 17 C 1.46961 * 118.81451 * 55.47391 * 5 4 2 18 18 C 1.53816 * 108.40181 * 304.48379 * 17 5 4 19 19 H 1.08997 * 109.88325 * 289.76950 * 18 17 5 20 20 C 1.52995 * 109.53434 * 169.30168 * 18 17 5 21 21 N 1.46965 * 109.60799 * 239.48594 * 2 1 3 22 22 C 1.36940 * 120.59363 * 115.50853 * 21 2 1 23 23 H 1.07997 * 120.00295 * 150.94429 * 22 21 2 24 24 C 1.38811 * 119.99665 * 330.94899 * 22 21 2 25 25 N 1.31618 * 120.00055 * 343.12104 * 24 22 21 26 26 Si 1.86803 * 119.99949 * 163.12546 * 24 22 21 27 27 H 1.48507 * 109.47035 * 89.99661 * 26 24 22 28 28 H 1.48494 * 109.47360 * 209.99323 * 26 24 22 29 29 H 1.48495 * 109.47363 * 329.99896 * 26 24 22 30 30 H 1.08998 * 109.47419 * 299.66367 * 1 2 3 31 31 H 1.09001 * 109.46884 * 59.66005 * 1 2 3 32 32 H 1.09001 * 109.47553 * 179.65411 * 1 2 3 33 33 H 1.08994 * 109.61282 * 310.57586 * 4 2 1 34 34 H 1.09000 * 109.60698 * 190.06193 * 4 2 1 35 35 H 1.08998 * 109.46879 * 299.99360 * 8 6 5 36 36 H 1.09006 * 109.47015 * 59.99435 * 8 6 5 37 37 H 0.97001 * 120.00128 * 359.97438 * 9 8 6 38 38 H 1.09005 * 109.46815 * 59.99864 * 14 13 12 39 39 H 1.08994 * 109.47180 * 180.02562 * 14 13 12 40 40 H 1.09005 * 109.46826 * 300.00525 * 14 13 12 41 41 H 1.08999 * 109.46949 * 59.99698 * 15 13 12 42 42 H 1.09004 * 109.46933 * 179.97438 * 15 13 12 43 43 H 1.09000 * 109.47017 * 299.99518 * 15 13 12 44 44 H 1.09005 * 109.47477 * 60.00044 * 16 13 12 45 45 H 1.09004 * 109.47446 * 180.02562 * 16 13 12 46 46 H 1.08996 * 109.47485 * 299.99942 * 16 13 12 47 47 H 1.08990 * 109.61111 * 64.26969 * 17 5 4 48 48 H 1.09007 * 109.61026 * 184.77981 * 17 5 4 49 49 H 1.09001 * 109.47298 * 302.51928 * 20 18 17 50 50 H 1.08994 * 109.46867 * 62.52392 * 20 18 17 51 51 H 1.09005 * 109.46966 * 182.51697 * 20 18 17 52 52 H 0.97003 * 119.99853 * 184.58365 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8958 1.0268 0.0000 4 6 2.0447 -0.7298 1.2469 5 7 1.7606 -2.1645 1.1021 6 6 1.0604 -2.8238 2.0464 7 8 0.6591 -2.2332 3.0267 8 6 0.7762 -4.2948 1.8841 9 7 0.0066 -4.7734 3.0350 10 6 -0.3637 -6.0673 3.1072 11 8 -0.0588 -6.8370 2.2178 12 8 -1.0715 -6.5070 4.1647 13 6 -1.4353 -7.9126 4.1760 14 6 -0.1671 -8.7680 4.1457 15 6 -2.2294 -8.2237 5.4463 16 6 -2.2922 -8.2275 2.9483 17 6 2.2586 -2.8686 -0.0878 18 6 1.7391 -2.1376 -1.3375 19 1 0.6642 -2.2895 -1.4358 20 6 2.4499 -2.6791 -2.5794 21 7 2.0232 -0.7029 -1.1927 22 6 2.7353 -0.0333 -2.1517 23 1 3.4696 -0.5585 -2.7443 24 6 2.5132 1.3207 -2.3621 25 7 1.4196 1.8880 -1.8989 26 14 3.7665 2.3377 -3.3026 27 1 3.4380 2.3125 -4.7507 28 1 3.7353 3.7390 -2.8123 29 1 5.1225 1.7699 -3.0928 30 1 -0.3634 0.5086 0.8929 31 1 -0.3633 0.5191 -0.8869 32 1 -0.3634 -1.0276 -0.0062 33 1 1.5383 -0.3441 2.1317 34 1 3.1198 -0.5777 1.3421 35 1 0.2029 -4.4555 0.9711 36 1 1.7170 -4.8421 1.8235 37 1 -0.2359 -4.1592 3.7456 38 1 0.4435 -8.5436 5.0204 39 1 -0.4402 -9.8231 4.1537 40 1 0.3991 -8.5464 3.2410 41 1 -3.1329 -7.6143 5.4682 42 1 -2.5029 -9.2788 5.4545 43 1 -1.6186 -7.9995 6.3207 44 1 -1.7261 -8.0060 2.0435 45 1 -2.5657 -9.2826 2.9569 46 1 -3.1957 -7.6182 2.9698 47 1 3.3485 -2.8652 -0.0855 48 1 1.8935 -3.8957 -0.0847 49 1 3.5268 -2.5565 -2.4641 50 1 2.2154 -3.7366 -2.7001 51 1 2.1137 -2.1298 -3.4589 52 1 1.2320 2.8177 -2.1024 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000880460307.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:30:04 Heat of formation + Delta-G solvation = -103.813754 kcal Electronic energy + Delta-G solvation = -31622.125485 eV Core-core repulsion = 27429.235613 eV Total energy + Delta-G solvation = -4192.889872 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 341.215 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -41.93178 -41.22456 -39.15365 -38.23595 -35.81705 -35.71890 -34.82874 -34.26592 -33.20248 -29.87134 -29.45119 -28.31137 -28.25758 -27.66826 -26.71605 -25.39397 -23.43785 -22.45468 -21.45817 -21.10433 -20.14352 -19.44065 -18.16382 -17.75651 -17.57462 -17.43120 -17.03403 -16.82924 -16.53854 -15.93287 -15.73586 -15.52811 -15.37185 -15.28183 -14.93490 -14.70250 -14.43902 -14.18363 -13.83824 -13.59430 -13.49464 -13.31378 -13.04688 -13.03946 -12.87209 -12.84663 -12.83096 -12.78094 -12.45262 -12.42789 -12.32798 -12.30598 -12.25131 -11.99050 -11.76201 -11.50256 -11.41460 -11.36572 -11.13617 -10.90780 -10.46014 -10.37759 -9.77130 -8.48216 -7.79304 -5.22677 1.00024 1.44980 1.49838 1.53298 1.59715 1.72155 2.01748 2.55591 3.12989 3.31736 3.36275 3.54575 3.78869 3.84021 3.98754 4.14563 4.17469 4.22425 4.25779 4.37816 4.48857 4.58384 4.62931 4.66322 4.66798 4.73145 4.76118 4.81350 4.82932 4.87752 4.90706 4.92130 4.96906 5.01082 5.10802 5.18494 5.20196 5.31829 5.33326 5.38160 5.44633 5.55024 5.59567 5.73707 5.76196 5.86621 6.30265 6.42041 6.48949 7.00217 7.23130 7.26935 7.92792 8.44753 9.26944 Molecular weight = 341.21amu Principal moments of inertia in cm(-1) A = 0.026901 B = 0.002338 C = 0.002254 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1040.614607 B =11974.531442 C =12416.738191 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C 0.181 3.819 3 H 0.072 0.928 4 C 0.106 3.894 5 N -0.589 5.589 6 C 0.507 3.493 7 O -0.577 6.577 8 C 0.128 3.872 9 N -0.699 5.699 10 C 0.654 3.346 11 O -0.584 6.584 12 O -0.370 6.370 13 C 0.122 3.878 14 C -0.179 4.179 15 C -0.137 4.137 16 C -0.180 4.180 17 C 0.096 3.904 18 C 0.146 3.854 19 H 0.020 0.980 20 C -0.129 4.129 21 N -0.595 5.595 22 C -0.247 4.247 23 H 0.078 0.922 24 C -0.048 4.048 25 N -0.927 5.927 26 Si 0.956 3.044 27 H -0.291 1.291 28 H -0.301 1.301 29 H -0.271 1.271 30 H 0.033 0.967 31 H 0.042 0.958 32 H 0.026 0.974 33 H 0.077 0.923 34 H 0.065 0.935 35 H 0.111 0.889 36 H 0.120 0.880 37 H 0.416 0.584 38 H 0.061 0.939 39 H 0.092 0.908 40 H 0.065 0.935 41 H 0.066 0.934 42 H 0.104 0.896 43 H 0.068 0.932 44 H 0.064 0.936 45 H 0.093 0.907 46 H 0.058 0.942 47 H 0.081 0.919 48 H 0.112 0.888 49 H 0.057 0.943 50 H 0.080 0.920 51 H 0.041 0.959 52 H 0.246 0.754 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.236 -20.791 10.977 23.732 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C 0.074 3.926 3 H 0.090 0.910 4 C -0.018 4.018 5 N -0.320 5.320 6 C 0.295 3.705 7 O -0.458 6.458 8 C 0.003 3.997 9 N -0.361 5.361 10 C 0.407 3.593 11 O -0.475 6.475 12 O -0.285 6.285 13 C 0.086 3.914 14 C -0.236 4.236 15 C -0.194 4.194 16 C -0.238 4.238 17 C -0.028 4.028 18 C 0.039 3.961 19 H 0.038 0.962 20 C -0.187 4.187 21 N -0.318 5.318 22 C -0.378 4.378 23 H 0.095 0.905 24 C -0.243 4.243 25 N -0.573 5.573 26 Si 0.786 3.214 27 H -0.218 1.218 28 H -0.228 1.228 29 H -0.196 1.196 30 H 0.052 0.948 31 H 0.062 0.938 32 H 0.045 0.955 33 H 0.095 0.905 34 H 0.083 0.917 35 H 0.129 0.871 36 H 0.138 0.862 37 H 0.254 0.746 38 H 0.080 0.920 39 H 0.111 0.889 40 H 0.083 0.917 41 H 0.086 0.914 42 H 0.123 0.877 43 H 0.087 0.913 44 H 0.083 0.917 45 H 0.111 0.889 46 H 0.078 0.922 47 H 0.099 0.901 48 H 0.130 0.870 49 H 0.076 0.924 50 H 0.099 0.901 51 H 0.061 0.939 52 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges -3.319 -20.750 11.090 23.760 hybrid contribution 0.246 1.674 -0.546 1.778 sum -3.073 -19.076 10.544 22.011 Atomic orbital electron populations 1.21779 0.98343 0.98256 0.99698 1.20559 0.92048 0.95872 0.84165 0.90979 1.22186 1.00086 0.80014 0.99520 1.47950 1.52744 1.10037 1.21225 1.20681 0.77812 0.89583 0.82440 1.90653 1.53823 1.69800 1.31541 1.21046 0.98804 0.90432 0.89466 1.44352 1.58039 1.07855 1.25836 1.17955 0.77505 0.82817 0.81018 1.90898 1.60540 1.55146 1.40888 1.86329 1.67335 1.31825 1.42966 1.22483 0.95768 0.74743 0.98360 1.22477 0.96994 1.01011 1.03156 1.21897 0.99663 1.03703 0.94102 1.22485 0.99608 1.03718 0.97953 1.22662 1.00107 0.96238 0.83767 1.21089 0.96293 0.84632 0.94069 0.96210 1.21701 1.00345 1.00247 0.96372 1.44371 1.63099 1.04491 1.19818 1.19442 1.13212 0.91590 1.13519 0.90464 1.25706 0.97949 0.99641 1.01006 1.70092 1.25124 1.12388 1.49725 0.85439 0.79986 0.77893 0.78065 1.21791 1.22828 1.19642 0.94828 0.93839 0.95466 0.90461 0.91709 0.87120 0.86181 0.74573 0.92018 0.88905 0.91655 0.91447 0.87704 0.91265 0.91696 0.88866 0.92245 0.90070 0.86963 0.92433 0.90145 0.93934 0.94491 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.43 8.96 71.98 0.64 -4.78 16 2 C 0.18 8.05 2.34 45.03 0.11 8.15 16 3 H 0.07 3.75 6.04 -2.39 -0.01 3.73 16 4 C 0.11 3.95 5.96 86.42 0.52 4.47 16 5 N -0.59 -18.57 2.60 -817.15 -2.13 -20.69 16 6 C 0.51 15.20 7.77 87.66 0.68 15.88 16 7 O -0.58 -20.70 15.07 -3.03 -0.05 -20.75 16 8 C 0.13 3.00 4.49 85.63 0.38 3.38 16 9 N -0.70 -17.16 5.53 -594.61 -3.29 -20.45 16 10 C 0.65 16.62 8.06 129.79 1.05 17.67 16 11 O -0.58 -16.26 11.88 19.80 0.24 -16.03 16 12 O -0.37 -8.51 9.94 -55.46 -0.55 -9.07 16 13 C 0.12 2.14 1.13 -10.79 -0.01 2.12 16 14 C -0.18 -2.94 8.37 71.98 0.60 -2.34 16 15 C -0.14 -1.56 8.85 71.98 0.64 -0.92 16 16 C -0.18 -3.09 8.37 71.98 0.60 -2.48 16 17 C 0.10 2.63 5.84 86.57 0.51 3.13 16 18 C 0.15 5.12 3.24 45.18 0.15 5.26 16 19 H 0.02 0.76 7.38 -2.39 -0.02 0.75 16 20 C -0.13 -3.95 7.94 71.98 0.57 -3.38 16 21 N -0.59 -26.41 2.68 -649.88 -1.74 -28.15 16 22 C -0.25 -12.19 8.55 84.03 0.72 -11.47 16 23 H 0.08 3.65 6.25 -2.91 -0.02 3.64 16 24 C -0.05 -2.48 4.92 84.86 0.42 -2.06 16 25 N -0.93 -51.52 10.13 21.65 0.22 -51.30 16 26 Si 0.96 42.95 29.59 68.60 2.03 44.98 16 27 H -0.29 -13.05 7.11 99.48 0.71 -12.34 16 28 H -0.30 -13.96 7.11 99.48 0.71 -13.25 16 29 H -0.27 -11.66 7.11 99.48 0.71 -10.96 16 30 H 0.03 1.41 8.14 -2.39 -0.02 1.39 16 31 H 0.04 2.20 7.16 -2.39 -0.02 2.19 16 32 H 0.03 1.13 7.00 -2.39 -0.02 1.12 16 33 H 0.08 2.96 6.97 -2.39 -0.02 2.94 16 34 H 0.06 2.37 8.14 -2.39 -0.02 2.35 16 35 H 0.11 2.43 7.73 -2.39 -0.02 2.41 16 36 H 0.12 2.35 7.90 -2.38 -0.02 2.34 16 37 H 0.42 10.48 7.55 -92.71 -0.70 9.78 16 38 H 0.06 0.97 8.14 -2.38 -0.02 0.95 16 39 H 0.09 1.06 8.14 -2.39 -0.02 1.04 16 40 H 0.06 1.41 5.88 -2.38 -0.01 1.40 16 41 H 0.07 0.78 8.14 -2.39 -0.02 0.76 16 42 H 0.10 0.68 8.14 -2.39 -0.02 0.67 16 43 H 0.07 0.77 8.14 -2.39 -0.02 0.75 16 44 H 0.06 1.46 5.88 -2.38 -0.01 1.44 16 45 H 0.09 1.12 8.14 -2.39 -0.02 1.10 16 46 H 0.06 1.01 8.14 -2.39 -0.02 0.99 16 47 H 0.08 2.14 8.12 -2.39 -0.02 2.12 16 48 H 0.11 2.24 5.91 -2.38 -0.01 2.23 16 49 H 0.06 1.74 7.47 -2.39 -0.02 1.73 16 50 H 0.08 1.85 8.14 -2.39 -0.02 1.83 16 51 H 0.04 1.51 7.58 -2.38 -0.02 1.49 16 52 H 0.25 13.56 8.32 -92.71 -0.77 12.79 16 Total: -1.00 -63.99 398.12 2.52 -61.47 By element: Atomic # 1 Polarization: 27.15 SS G_CDS: 0.22 Total: 27.37 kcal Atomic # 6 Polarization: 25.06 SS G_CDS: 7.57 Total: 32.62 kcal Atomic # 7 Polarization: -113.66 SS G_CDS: -6.94 Total: -120.60 kcal Atomic # 8 Polarization: -45.48 SS G_CDS: -0.36 Total: -45.84 kcal Atomic # 14 Polarization: 42.95 SS G_CDS: 2.03 Total: 44.98 kcal Total: -63.99 2.52 -61.47 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000880460307.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.342 kcal (2) G-P(sol) polarization free energy of solvation -63.988 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -106.330 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.516 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.471 kcal (6) G-S(sol) free energy of system = (1) + (5) -103.814 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds