Wall clock time and date at job start Wed Apr 1 2020 01:30:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 H 1.09008 * 109.60580 * 2 1 4 4 C 1.53372 * 109.61444 * 239.66310 * 2 1 3 5 5 N 1.46963 * 108.62981 * 289.67736 * 4 2 1 6 6 C 1.34776 * 120.59668 * 124.75196 * 5 4 2 7 7 O 1.21284 * 119.99789 * 359.97438 * 6 5 4 8 8 C 1.50702 * 120.00349 * 179.97438 * 6 5 4 9 9 N 1.46500 * 109.46790 * 179.97438 * 8 6 5 10 10 C 1.34781 * 119.99583 * 179.97438 * 9 8 6 11 11 O 1.21512 * 120.00090 * 359.97438 * 10 9 8 12 12 O 1.34633 * 120.00011 * 179.97438 * 10 9 8 13 13 C 1.45195 * 116.99955 * 179.97438 * 12 10 9 14 14 C 1.53002 * 109.47392 * 60.00740 * 13 12 10 15 15 C 1.53002 * 109.47332 * 180.02562 * 13 12 10 16 16 C 1.53002 * 109.47551 * 300.00456 * 13 12 10 17 17 C 1.46968 * 118.81251 * 304.76871 * 5 4 2 18 18 C 1.53367 * 108.63574 * 55.23031 * 17 5 4 19 19 H 1.09006 * 109.61071 * 70.48832 * 18 17 5 20 20 C 1.53000 * 109.61182 * 190.83169 * 18 17 5 21 21 N 1.46962 * 109.61343 * 120.51036 * 2 1 3 22 22 C 1.36943 * 120.59876 * 244.49872 * 21 2 1 23 23 H 1.07994 * 119.99924 * 209.05804 * 22 21 2 24 24 C 1.38808 * 119.99706 * 29.05856 * 22 21 2 25 25 N 1.31626 * 120.00133 * 16.71355 * 24 22 21 26 26 Si 1.86795 * 120.00149 * 196.71419 * 24 22 21 27 27 H 1.48505 * 109.46885 * 359.97438 * 26 24 22 28 28 H 1.48497 * 109.47334 * 119.99723 * 26 24 22 29 29 H 1.48505 * 109.47432 * 240.00188 * 26 24 22 30 30 H 1.09011 * 109.46931 * 180.34129 * 1 2 3 31 31 H 1.09004 * 109.47430 * 300.33700 * 1 2 3 32 32 H 1.08991 * 109.47676 * 60.34133 * 1 2 3 33 33 H 1.08999 * 109.60600 * 49.41587 * 4 2 1 34 34 H 1.09000 * 109.61333 * 169.93501 * 4 2 1 35 35 H 1.09000 * 109.46779 * 299.99657 * 8 6 5 36 36 H 1.09001 * 109.46992 * 59.99963 * 8 6 5 37 37 H 0.96999 * 120.00410 * 359.97438 * 9 8 6 38 38 H 1.08996 * 109.47010 * 59.99604 * 14 13 12 39 39 H 1.08995 * 109.47295 * 180.02562 * 14 13 12 40 40 H 1.09009 * 109.46413 * 299.99963 * 14 13 12 41 41 H 1.09004 * 109.47103 * 59.99996 * 15 13 12 42 42 H 1.08997 * 109.47525 * 180.02562 * 15 13 12 43 43 H 1.09004 * 109.47091 * 300.00056 * 15 13 12 44 44 H 1.08996 * 109.46799 * 59.99671 * 16 13 12 45 45 H 1.08998 * 109.47051 * 180.02562 * 16 13 12 46 46 H 1.09004 * 109.46869 * 299.99994 * 16 13 12 47 47 H 1.09004 * 109.61051 * 174.97410 * 17 5 4 48 48 H 1.08996 * 109.61127 * 295.48364 * 17 5 4 49 49 H 1.08992 * 109.47094 * 56.08774 * 20 18 17 50 50 H 1.09002 * 109.46902 * 176.08194 * 20 18 17 51 51 H 1.08994 * 109.47111 * 296.08015 * 20 18 17 52 52 H 0.96996 * 120.00013 * 174.98427 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8957 1.0269 0.0000 4 6 2.0448 -0.7297 -1.2469 5 7 1.7606 -2.1643 -1.1021 6 6 1.0599 -2.8235 -2.0460 7 8 0.6573 -2.2326 -3.0256 8 6 0.7767 -4.2948 -1.8842 9 7 0.0051 -4.7729 -3.0341 10 6 -0.3647 -6.0669 -3.1065 11 8 -0.0576 -6.8371 -2.2182 12 8 -1.0742 -6.5062 -4.1630 13 6 -1.4373 -7.9120 -4.1746 14 6 -2.2919 -8.2282 -2.9455 15 6 -2.2338 -8.2226 -5.4435 16 6 -0.1687 -8.7668 -4.1473 17 6 2.2540 -2.8672 0.0906 18 6 1.7392 -2.1375 1.3374 19 1 0.6645 -2.2923 1.4343 20 6 2.4500 -2.6790 2.5794 21 7 2.0232 -0.7028 1.1927 22 6 2.7353 -0.0331 2.1518 23 1 3.4697 -0.5583 2.7443 24 6 2.5130 1.3208 2.3623 25 7 1.4207 1.8887 1.8964 26 14 3.7639 2.3369 3.3067 27 1 4.8954 1.4688 3.7210 28 1 4.2703 3.4303 2.4387 29 1 3.1204 2.9192 4.5118 30 1 -0.3633 -1.0278 0.0061 31 1 -0.3634 0.5191 0.8870 32 1 -0.3634 0.5085 -0.8929 33 1 1.5383 -0.3440 -2.1316 34 1 3.1199 -0.5775 -1.3421 35 1 1.7179 -4.8416 -1.8251 36 1 0.2046 -4.4564 -0.9706 37 1 -0.2396 -4.1581 -3.7434 38 1 -3.1957 -7.6193 -2.9650 39 1 -2.5641 -9.2836 -2.9540 40 1 -1.7241 -8.0070 -2.0416 41 1 -1.6247 -7.9974 -6.3190 42 1 -2.5068 -9.2778 -5.4521 43 1 -3.1377 -7.6137 -5.4634 44 1 0.3990 -8.5456 -3.2436 45 1 -0.4413 -9.8221 -4.1565 46 1 0.4401 -8.5415 -5.0231 47 1 1.8857 -3.8932 0.0890 48 1 3.3439 -2.8672 0.0906 49 1 3.5281 -2.5808 2.4528 50 1 2.1340 -2.1119 3.4550 51 1 2.1942 -3.7297 2.7153 52 1 1.2296 2.8164 2.1051 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000880460309.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:30:12 Heat of formation + Delta-G solvation = -85.933376 kcal Electronic energy + Delta-G solvation = -31623.042831 eV Core-core repulsion = 27430.928311 eV Total energy + Delta-G solvation = -4192.114520 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 341.215 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -40.94329 -39.93052 -37.80967 -37.15105 -34.75395 -34.17662 -33.97686 -32.76846 -31.41970 -28.47365 -27.88802 -27.65804 -27.60154 -26.31888 -25.19337 -23.68313 -22.44415 -20.94209 -20.38068 -19.81949 -18.74245 -18.30324 -16.93494 -16.58667 -16.48082 -16.08041 -15.79760 -15.37788 -15.13824 -14.83034 -14.57307 -14.35279 -14.08132 -13.73002 -13.65230 -13.38521 -13.34372 -12.89197 -12.73942 -12.58457 -12.29791 -12.13506 -12.12483 -12.04689 -11.79287 -11.64260 -11.60414 -11.52751 -11.23071 -11.04754 -10.83391 -10.68012 -10.63982 -10.56197 -10.23395 -10.18174 -10.12075 -9.85260 -9.75374 -9.43602 -9.35931 -8.56989 -8.30347 -6.68779 -5.86878 -3.30380 1.94857 2.67976 2.77794 3.28594 3.31687 3.40981 3.41562 4.04479 4.39479 4.47267 4.51818 4.53037 4.65993 5.07756 5.18864 5.21205 5.24080 5.28975 5.29079 5.41074 5.43800 5.53338 5.55621 5.57013 5.62077 5.73171 5.80492 5.88999 5.98690 6.06121 6.09839 6.17747 6.19662 6.21387 6.29554 6.38906 6.43476 6.55223 6.68818 6.81656 6.88196 6.96437 7.01420 7.32865 7.52222 7.59870 7.71899 7.80796 8.25431 8.31927 8.37266 9.12441 9.74143 10.30477 11.21362 Molecular weight = 341.21amu Principal moments of inertia in cm(-1) A = 0.026905 B = 0.002338 C = 0.002255 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1040.457356 B =11973.755888 C =12416.530968 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C 0.179 3.821 3 H 0.108 0.892 4 C 0.092 3.908 5 N -0.585 5.585 6 C 0.504 3.496 7 O -0.551 6.551 8 C 0.120 3.880 9 N -0.697 5.697 10 C 0.654 3.346 11 O -0.571 6.571 12 O -0.363 6.363 13 C 0.136 3.864 14 C -0.184 4.184 15 C -0.141 4.141 16 C -0.184 4.184 17 C 0.088 3.912 18 C 0.154 3.846 19 H 0.032 0.968 20 C -0.137 4.137 21 N -0.580 5.580 22 C -0.254 4.254 23 H 0.072 0.928 24 C 0.005 3.995 25 N -0.899 5.899 26 Si 0.901 3.099 27 H -0.278 1.278 28 H -0.289 1.289 29 H -0.291 1.291 30 H 0.021 0.979 31 H 0.075 0.925 32 H 0.029 0.971 33 H 0.082 0.918 34 H 0.062 0.938 35 H 0.099 0.901 36 H 0.101 0.899 37 H 0.417 0.583 38 H 0.060 0.940 39 H 0.069 0.931 40 H 0.089 0.911 41 H 0.066 0.934 42 H 0.080 0.920 43 H 0.067 0.933 44 H 0.088 0.912 45 H 0.069 0.931 46 H 0.059 0.941 47 H 0.073 0.927 48 H 0.071 0.929 49 H 0.055 0.945 50 H 0.068 0.932 51 H 0.041 0.959 52 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.684 -17.736 -10.225 20.801 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C 0.072 3.928 3 H 0.126 0.874 4 C -0.031 4.031 5 N -0.316 5.316 6 C 0.290 3.710 7 O -0.431 6.431 8 C -0.006 4.006 9 N -0.360 5.360 10 C 0.407 3.593 11 O -0.460 6.460 12 O -0.278 6.278 13 C 0.099 3.901 14 C -0.241 4.241 15 C -0.198 4.198 16 C -0.241 4.241 17 C -0.037 4.037 18 C 0.046 3.954 19 H 0.050 0.950 20 C -0.195 4.195 21 N -0.303 5.303 22 C -0.383 4.383 23 H 0.090 0.910 24 C -0.193 4.193 25 N -0.543 5.543 26 Si 0.732 3.268 27 H -0.203 1.203 28 H -0.216 1.216 29 H -0.218 1.218 30 H 0.040 0.960 31 H 0.094 0.906 32 H 0.048 0.952 33 H 0.100 0.900 34 H 0.080 0.920 35 H 0.117 0.883 36 H 0.119 0.881 37 H 0.255 0.745 38 H 0.079 0.921 39 H 0.088 0.912 40 H 0.107 0.893 41 H 0.085 0.915 42 H 0.098 0.902 43 H 0.086 0.914 44 H 0.107 0.893 45 H 0.088 0.912 46 H 0.078 0.922 47 H 0.092 0.908 48 H 0.090 0.910 49 H 0.074 0.926 50 H 0.087 0.913 51 H 0.060 0.940 52 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -3.768 -17.652 -10.337 20.800 hybrid contribution 0.430 0.816 0.338 0.982 sum -3.339 -16.836 -9.999 19.864 Atomic orbital electron populations 1.21982 0.98069 0.98549 1.01165 1.20754 0.92403 0.97019 0.82604 0.87410 1.22586 1.00252 0.78606 1.01643 1.47949 1.52410 1.10997 1.20249 1.20235 0.78952 0.88500 0.83292 1.90660 1.52997 1.68882 1.30523 1.21058 0.97597 0.92804 0.89139 1.44339 1.57855 1.07784 1.25986 1.17899 0.77542 0.82985 0.80869 1.90899 1.59942 1.54805 1.40378 1.86311 1.67656 1.30156 1.43633 1.22079 0.95165 0.75916 0.96952 1.22524 1.00204 1.02221 0.99172 1.21863 1.00155 1.02179 0.95604 1.22521 0.97465 0.99711 1.04372 1.22576 0.99625 0.95197 0.86275 1.20762 0.96571 0.86640 0.91409 0.94993 1.21779 1.00595 0.98466 0.98624 1.44179 1.63129 1.02826 1.20179 1.19201 1.13557 0.91460 1.14093 0.91005 1.25098 0.96589 0.98384 0.99271 1.69934 1.23589 1.12967 1.47797 0.86241 0.81093 0.80351 0.79161 1.20324 1.21609 1.21834 0.96030 0.90587 0.95240 0.89955 0.91980 0.88301 0.88134 0.74471 0.92114 0.91173 0.89254 0.91455 0.90155 0.91420 0.89279 0.91174 0.92186 0.90844 0.91040 0.92622 0.91292 0.93955 0.93525 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.02 8.96 37.15 0.33 -2.69 16 2 C 0.18 3.92 2.34 -67.49 -0.16 3.76 16 3 H 0.11 2.69 6.04 -51.92 -0.31 2.38 16 4 C 0.09 1.74 5.97 -3.60 -0.02 1.72 16 5 N -0.58 -9.78 2.61 -172.49 -0.45 -10.23 16 6 C 0.50 8.06 7.77 -10.99 -0.09 7.97 16 7 O -0.55 -10.20 15.07 5.55 0.08 -10.11 16 8 C 0.12 1.57 4.50 -5.19 -0.02 1.55 16 9 N -0.70 -9.18 5.53 -66.47 -0.37 -9.54 16 10 C 0.65 8.81 8.06 54.06 0.44 9.25 16 11 O -0.57 -8.40 11.88 -19.28 -0.23 -8.63 16 12 O -0.36 -4.43 9.94 -40.31 -0.40 -4.83 16 13 C 0.14 1.32 1.13 -90.62 -0.10 1.21 16 14 C -0.18 -1.74 8.37 37.16 0.31 -1.43 16 15 C -0.14 -0.99 8.85 37.16 0.33 -0.66 16 16 C -0.18 -1.69 8.37 37.16 0.31 -1.38 16 17 C 0.09 1.34 5.82 -3.60 -0.02 1.32 16 18 C 0.15 2.83 3.22 -67.48 -0.22 2.61 16 19 H 0.03 0.63 7.39 -51.93 -0.38 0.25 16 20 C -0.14 -2.26 7.94 37.16 0.30 -1.96 16 21 N -0.58 -12.92 2.68 -157.02 -0.42 -13.34 16 22 C -0.25 -6.24 8.53 -15.06 -0.13 -6.36 16 23 H 0.07 1.73 6.27 -52.49 -0.33 1.40 16 24 C 0.01 0.14 4.92 -17.43 -0.09 0.05 16 25 N -0.90 -24.05 10.13 55.49 0.56 -23.49 16 26 Si 0.90 20.51 29.59 -169.99 -5.03 15.48 16 27 H -0.28 -6.20 7.11 56.52 0.40 -5.80 16 28 H -0.29 -6.71 7.11 56.52 0.40 -6.31 16 29 H -0.29 -6.78 7.11 56.52 0.40 -6.37 16 30 H 0.02 0.44 7.00 -51.92 -0.36 0.08 16 31 H 0.08 1.87 7.17 -51.93 -0.37 1.49 16 32 H 0.03 0.60 8.14 -51.93 -0.42 0.18 16 33 H 0.08 1.58 6.97 -51.93 -0.36 1.22 16 34 H 0.06 1.15 8.14 -51.93 -0.42 0.73 16 35 H 0.10 1.16 7.91 -51.93 -0.41 0.75 16 36 H 0.10 1.27 7.72 -51.93 -0.40 0.87 16 37 H 0.42 5.51 7.55 -40.82 -0.31 5.20 16 38 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 39 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 40 H 0.09 1.05 5.88 -51.92 -0.31 0.75 16 41 H 0.07 0.46 8.14 -51.93 -0.42 0.03 16 42 H 0.08 0.41 8.14 -51.93 -0.42 -0.02 16 43 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 44 H 0.09 1.02 5.88 -51.93 -0.31 0.72 16 45 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 46 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 47 H 0.07 0.90 5.91 -51.93 -0.31 0.60 16 48 H 0.07 1.07 8.11 -51.93 -0.42 0.65 16 49 H 0.05 0.91 7.55 -51.93 -0.39 0.52 16 50 H 0.07 1.27 7.49 -51.93 -0.39 0.88 16 51 H 0.04 0.57 8.14 -51.93 -0.42 0.14 16 52 H 0.25 6.70 8.32 -40.82 -0.34 6.36 16 LS Contribution 398.07 15.07 6.00 6.00 Total: -1.00 -28.75 398.07 -7.81 -36.56 By element: Atomic # 1 Polarization: 15.90 SS G_CDS: -8.73 Total: 7.17 kcal Atomic # 6 Polarization: 13.80 SS G_CDS: 1.17 Total: 14.97 kcal Atomic # 7 Polarization: -55.93 SS G_CDS: -0.68 Total: -56.61 kcal Atomic # 8 Polarization: -23.02 SS G_CDS: -0.55 Total: -23.57 kcal Atomic # 14 Polarization: 20.51 SS G_CDS: -5.03 Total: 15.48 kcal Total LS contribution 6.00 Total: 6.00 kcal Total: -28.75 -7.81 -36.56 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000880460309.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -49.371 kcal (2) G-P(sol) polarization free energy of solvation -28.754 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.125 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.808 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.562 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.933 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds