Wall clock time and date at job start Wed Apr 1 2020 01:30:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 H 1.09008 * 109.60580 * 2 1 4 4 C 1.53372 * 109.61444 * 239.66310 * 2 1 3 5 5 N 1.46963 * 108.62981 * 289.67736 * 4 2 1 6 6 C 1.34776 * 120.59668 * 124.75196 * 5 4 2 7 7 O 1.21284 * 119.99789 * 359.97438 * 6 5 4 8 8 C 1.50702 * 120.00349 * 179.97438 * 6 5 4 9 9 N 1.46500 * 109.46790 * 179.97438 * 8 6 5 10 10 C 1.34781 * 119.99583 * 179.97438 * 9 8 6 11 11 O 1.21512 * 120.00090 * 359.97438 * 10 9 8 12 12 O 1.34633 * 120.00011 * 179.97438 * 10 9 8 13 13 C 1.45195 * 116.99955 * 179.97438 * 12 10 9 14 14 C 1.53002 * 109.47392 * 60.00740 * 13 12 10 15 15 C 1.53002 * 109.47332 * 180.02562 * 13 12 10 16 16 C 1.53002 * 109.47551 * 300.00456 * 13 12 10 17 17 C 1.46968 * 118.81251 * 304.76871 * 5 4 2 18 18 C 1.53367 * 108.63574 * 55.23031 * 17 5 4 19 19 H 1.09006 * 109.61071 * 70.48832 * 18 17 5 20 20 C 1.53000 * 109.61182 * 190.83169 * 18 17 5 21 21 N 1.46962 * 109.61343 * 120.51036 * 2 1 3 22 22 C 1.36943 * 120.59876 * 244.49872 * 21 2 1 23 23 H 1.07994 * 119.99924 * 209.05804 * 22 21 2 24 24 C 1.38808 * 119.99706 * 29.05856 * 22 21 2 25 25 N 1.31626 * 120.00133 * 16.71355 * 24 22 21 26 26 Si 1.86795 * 120.00149 * 196.71419 * 24 22 21 27 27 H 1.48505 * 109.46885 * 359.97438 * 26 24 22 28 28 H 1.48497 * 109.47334 * 119.99723 * 26 24 22 29 29 H 1.48505 * 109.47432 * 240.00188 * 26 24 22 30 30 H 1.09011 * 109.46931 * 180.34129 * 1 2 3 31 31 H 1.09004 * 109.47430 * 300.33700 * 1 2 3 32 32 H 1.08991 * 109.47676 * 60.34133 * 1 2 3 33 33 H 1.08999 * 109.60600 * 49.41587 * 4 2 1 34 34 H 1.09000 * 109.61333 * 169.93501 * 4 2 1 35 35 H 1.09000 * 109.46779 * 299.99657 * 8 6 5 36 36 H 1.09001 * 109.46992 * 59.99963 * 8 6 5 37 37 H 0.96999 * 120.00410 * 359.97438 * 9 8 6 38 38 H 1.08996 * 109.47010 * 59.99604 * 14 13 12 39 39 H 1.08995 * 109.47295 * 180.02562 * 14 13 12 40 40 H 1.09009 * 109.46413 * 299.99963 * 14 13 12 41 41 H 1.09004 * 109.47103 * 59.99996 * 15 13 12 42 42 H 1.08997 * 109.47525 * 180.02562 * 15 13 12 43 43 H 1.09004 * 109.47091 * 300.00056 * 15 13 12 44 44 H 1.08996 * 109.46799 * 59.99671 * 16 13 12 45 45 H 1.08998 * 109.47051 * 180.02562 * 16 13 12 46 46 H 1.09004 * 109.46869 * 299.99994 * 16 13 12 47 47 H 1.09004 * 109.61051 * 174.97410 * 17 5 4 48 48 H 1.08996 * 109.61127 * 295.48364 * 17 5 4 49 49 H 1.08992 * 109.47094 * 56.08774 * 20 18 17 50 50 H 1.09002 * 109.46902 * 176.08194 * 20 18 17 51 51 H 1.08994 * 109.47111 * 296.08015 * 20 18 17 52 52 H 0.96996 * 120.00013 * 174.98427 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8957 1.0269 0.0000 4 6 2.0448 -0.7297 -1.2469 5 7 1.7606 -2.1643 -1.1021 6 6 1.0599 -2.8235 -2.0460 7 8 0.6573 -2.2326 -3.0256 8 6 0.7767 -4.2948 -1.8842 9 7 0.0051 -4.7729 -3.0341 10 6 -0.3647 -6.0669 -3.1065 11 8 -0.0576 -6.8371 -2.2182 12 8 -1.0742 -6.5062 -4.1630 13 6 -1.4373 -7.9120 -4.1746 14 6 -2.2919 -8.2282 -2.9455 15 6 -2.2338 -8.2226 -5.4435 16 6 -0.1687 -8.7668 -4.1473 17 6 2.2540 -2.8672 0.0906 18 6 1.7392 -2.1375 1.3374 19 1 0.6645 -2.2923 1.4343 20 6 2.4500 -2.6790 2.5794 21 7 2.0232 -0.7028 1.1927 22 6 2.7353 -0.0331 2.1518 23 1 3.4697 -0.5583 2.7443 24 6 2.5130 1.3208 2.3623 25 7 1.4207 1.8887 1.8964 26 14 3.7639 2.3369 3.3067 27 1 4.8954 1.4688 3.7210 28 1 4.2703 3.4303 2.4387 29 1 3.1204 2.9192 4.5118 30 1 -0.3633 -1.0278 0.0061 31 1 -0.3634 0.5191 0.8870 32 1 -0.3634 0.5085 -0.8929 33 1 1.5383 -0.3440 -2.1316 34 1 3.1199 -0.5775 -1.3421 35 1 1.7179 -4.8416 -1.8251 36 1 0.2046 -4.4564 -0.9706 37 1 -0.2396 -4.1581 -3.7434 38 1 -3.1957 -7.6193 -2.9650 39 1 -2.5641 -9.2836 -2.9540 40 1 -1.7241 -8.0070 -2.0416 41 1 -1.6247 -7.9974 -6.3190 42 1 -2.5068 -9.2778 -5.4521 43 1 -3.1377 -7.6137 -5.4634 44 1 0.3990 -8.5456 -3.2436 45 1 -0.4413 -9.8221 -4.1565 46 1 0.4401 -8.5415 -5.0231 47 1 1.8857 -3.8932 0.0890 48 1 3.3439 -2.8672 0.0906 49 1 3.5281 -2.5808 2.4528 50 1 2.1340 -2.1119 3.4550 51 1 2.1942 -3.7297 2.7153 52 1 1.2296 2.8164 2.1051 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000880460309.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:30:11 Heat of formation + Delta-G solvation = -103.890591 kcal Electronic energy + Delta-G solvation = -31623.821514 eV Core-core repulsion = 27430.928311 eV Total energy + Delta-G solvation = -4192.893204 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 341.215 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -41.93293 -41.23022 -39.16305 -38.23706 -35.81761 -35.72094 -34.83035 -34.28159 -33.20158 -29.87789 -29.45396 -28.31163 -28.25739 -27.67562 -26.71961 -25.39533 -23.43796 -22.45589 -21.46172 -21.10691 -20.14229 -19.44226 -18.16620 -17.75783 -17.57778 -17.43321 -17.03601 -16.83157 -16.54064 -15.93728 -15.73549 -15.52729 -15.37588 -15.28200 -14.93772 -14.70212 -14.43933 -14.18414 -13.83963 -13.59456 -13.49933 -13.31405 -13.04706 -13.03532 -12.87058 -12.84849 -12.83100 -12.81638 -12.45776 -12.42976 -12.30827 -12.29156 -12.25746 -11.97135 -11.76247 -11.50173 -11.41338 -11.36572 -11.13648 -10.91034 -10.46983 -10.37796 -9.77376 -8.48484 -7.79458 -5.23060 0.99998 1.44754 1.49238 1.53196 1.60306 1.72136 2.01584 2.55302 3.12963 3.31561 3.35991 3.54310 3.78854 3.84011 3.98756 4.15196 4.17232 4.22445 4.25686 4.37607 4.49392 4.58390 4.62831 4.66187 4.66792 4.73114 4.76133 4.81341 4.82882 4.87801 4.90777 4.92113 4.96760 5.01072 5.10778 5.18430 5.20178 5.31732 5.33329 5.38154 5.44616 5.55014 5.59833 5.73598 5.76191 5.86626 6.30247 6.41938 6.48993 7.00133 7.22926 7.26915 7.92431 8.44329 9.26945 Molecular weight = 341.21amu Principal moments of inertia in cm(-1) A = 0.026905 B = 0.002338 C = 0.002255 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1040.457356 B =11973.755888 C =12416.530968 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C 0.181 3.819 3 H 0.072 0.928 4 C 0.106 3.894 5 N -0.589 5.589 6 C 0.507 3.493 7 O -0.577 6.577 8 C 0.128 3.872 9 N -0.699 5.699 10 C 0.654 3.346 11 O -0.584 6.584 12 O -0.370 6.370 13 C 0.122 3.878 14 C -0.180 4.180 15 C -0.137 4.137 16 C -0.179 4.179 17 C 0.096 3.904 18 C 0.145 3.855 19 H 0.020 0.980 20 C -0.129 4.129 21 N -0.595 5.595 22 C -0.245 4.245 23 H 0.078 0.922 24 C -0.048 4.048 25 N -0.927 5.927 26 Si 0.956 3.044 27 H -0.266 1.266 28 H -0.298 1.298 29 H -0.300 1.300 30 H 0.026 0.974 31 H 0.042 0.958 32 H 0.033 0.967 33 H 0.077 0.923 34 H 0.065 0.935 35 H 0.121 0.879 36 H 0.111 0.889 37 H 0.416 0.584 38 H 0.059 0.941 39 H 0.093 0.907 40 H 0.064 0.936 41 H 0.068 0.932 42 H 0.104 0.896 43 H 0.066 0.934 44 H 0.065 0.935 45 H 0.092 0.908 46 H 0.061 0.939 47 H 0.112 0.888 48 H 0.081 0.919 49 H 0.057 0.943 50 H 0.042 0.958 51 H 0.079 0.921 52 H 0.246 0.754 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.237 -20.856 -10.935 23.770 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C 0.073 3.927 3 H 0.090 0.910 4 C -0.018 4.018 5 N -0.319 5.319 6 C 0.295 3.705 7 O -0.458 6.458 8 C 0.003 3.997 9 N -0.361 5.361 10 C 0.407 3.593 11 O -0.475 6.475 12 O -0.285 6.285 13 C 0.086 3.914 14 C -0.238 4.238 15 C -0.194 4.194 16 C -0.236 4.236 17 C -0.028 4.028 18 C 0.039 3.961 19 H 0.037 0.963 20 C -0.187 4.187 21 N -0.318 5.318 22 C -0.376 4.376 23 H 0.096 0.904 24 C -0.243 4.243 25 N -0.574 5.574 26 Si 0.786 3.214 27 H -0.191 1.191 28 H -0.225 1.225 29 H -0.228 1.228 30 H 0.045 0.955 31 H 0.062 0.938 32 H 0.052 0.948 33 H 0.095 0.905 34 H 0.083 0.917 35 H 0.138 0.862 36 H 0.129 0.871 37 H 0.254 0.746 38 H 0.078 0.922 39 H 0.111 0.889 40 H 0.083 0.917 41 H 0.087 0.913 42 H 0.123 0.877 43 H 0.086 0.914 44 H 0.084 0.916 45 H 0.111 0.889 46 H 0.080 0.920 47 H 0.130 0.870 48 H 0.099 0.901 49 H 0.076 0.924 50 H 0.061 0.939 51 H 0.098 0.902 52 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges -3.311 -20.824 -11.048 23.805 hybrid contribution 0.233 1.693 0.534 1.790 sum -3.078 -19.132 -10.514 22.046 Atomic orbital electron populations 1.21777 0.98339 0.98248 0.99698 1.20562 0.92051 0.95889 0.84166 0.90962 1.22187 1.00095 0.80012 0.99521 1.47946 1.52809 1.10078 1.21107 1.20682 0.77782 0.89596 0.82454 1.90655 1.53751 1.69799 1.31613 1.21047 0.98780 0.90427 0.89490 1.44354 1.57928 1.07828 1.25978 1.17955 0.77513 0.82821 0.81007 1.90898 1.60521 1.55114 1.40937 1.86329 1.67252 1.31817 1.43057 1.22484 0.95777 0.74737 0.98359 1.22485 0.99627 1.03712 0.97937 1.21898 0.99641 1.03707 0.94122 1.22476 0.96992 1.01016 1.03153 1.22575 1.00198 0.96256 0.83745 1.21007 0.96333 0.84649 0.94120 0.96257 1.21702 1.00328 1.00240 0.96401 1.44383 1.63076 1.04491 1.19836 1.19488 1.13114 0.91527 1.13434 0.90409 1.25711 0.97972 0.99629 1.01036 1.70092 1.25188 1.12514 1.49605 0.85366 0.79585 0.78895 0.77512 1.19074 1.22540 1.22788 0.95473 0.93840 0.94831 0.90471 0.91690 0.86170 0.87125 0.74573 0.92237 0.88864 0.91699 0.91269 0.87704 0.91446 0.91649 0.88904 0.92027 0.86975 0.90074 0.92416 0.93860 0.90178 0.94494 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.42 8.96 71.98 0.64 -4.78 16 2 C 0.18 8.03 2.34 45.03 0.11 8.14 16 3 H 0.07 3.76 6.04 -2.38 -0.01 3.74 16 4 C 0.11 3.95 5.97 86.42 0.52 4.47 16 5 N -0.59 -18.56 2.61 -818.01 -2.13 -20.69 16 6 C 0.51 15.20 7.77 87.66 0.68 15.88 16 7 O -0.58 -20.71 15.07 -3.04 -0.05 -20.75 16 8 C 0.13 3.00 4.50 85.63 0.38 3.38 16 9 N -0.70 -17.16 5.53 -594.60 -3.29 -20.45 16 10 C 0.65 16.62 8.06 129.79 1.05 17.66 16 11 O -0.58 -16.26 11.88 19.80 0.24 -16.02 16 12 O -0.37 -8.51 9.94 -55.43 -0.55 -9.06 16 13 C 0.12 2.13 1.13 -10.79 -0.01 2.12 16 14 C -0.18 -3.09 8.37 71.98 0.60 -2.48 16 15 C -0.14 -1.56 8.85 71.98 0.64 -0.92 16 16 C -0.18 -2.94 8.37 71.98 0.60 -2.34 16 17 C 0.10 2.62 5.82 86.41 0.50 3.13 16 18 C 0.15 5.10 3.22 45.03 0.15 5.25 16 19 H 0.02 0.75 7.39 -2.38 -0.02 0.73 16 20 C -0.13 -3.95 7.94 71.98 0.57 -3.37 16 21 N -0.59 -26.38 2.68 -650.70 -1.75 -28.13 16 22 C -0.25 -12.07 8.53 84.03 0.72 -11.36 16 23 H 0.08 3.68 6.27 -2.91 -0.02 3.66 16 24 C -0.05 -2.50 4.92 84.86 0.42 -2.09 16 25 N -0.93 -51.55 10.13 21.65 0.22 -51.33 16 26 Si 0.96 42.97 29.59 68.60 2.03 45.00 16 27 H -0.27 -11.30 7.11 99.48 0.71 -10.59 16 28 H -0.30 -13.68 7.11 99.48 0.71 -12.97 16 29 H -0.30 -13.80 7.11 99.48 0.71 -13.09 16 30 H 0.03 1.13 7.00 -2.38 -0.02 1.11 16 31 H 0.04 2.20 7.17 -2.38 -0.02 2.19 16 32 H 0.03 1.41 8.14 -2.39 -0.02 1.39 16 33 H 0.08 2.96 6.97 -2.39 -0.02 2.94 16 34 H 0.06 2.38 8.14 -2.39 -0.02 2.36 16 35 H 0.12 2.36 7.91 -2.39 -0.02 2.34 16 36 H 0.11 2.43 7.72 -2.39 -0.02 2.41 16 37 H 0.42 10.48 7.55 -92.71 -0.70 9.78 16 38 H 0.06 1.01 8.14 -2.39 -0.02 0.99 16 39 H 0.09 1.12 8.14 -2.39 -0.02 1.10 16 40 H 0.06 1.45 5.88 -2.38 -0.01 1.44 16 41 H 0.07 0.77 8.14 -2.38 -0.02 0.75 16 42 H 0.10 0.68 8.14 -2.39 -0.02 0.67 16 43 H 0.07 0.78 8.14 -2.39 -0.02 0.76 16 44 H 0.06 1.41 5.88 -2.39 -0.01 1.40 16 45 H 0.09 1.06 8.14 -2.39 -0.02 1.04 16 46 H 0.06 0.97 8.14 -2.38 -0.02 0.95 16 47 H 0.11 2.24 5.91 -2.38 -0.01 2.22 16 48 H 0.08 2.14 8.11 -2.39 -0.02 2.12 16 49 H 0.06 1.74 7.55 -2.39 -0.02 1.72 16 50 H 0.04 1.54 7.49 -2.39 -0.02 1.52 16 51 H 0.08 1.84 8.14 -2.39 -0.02 1.82 16 52 H 0.25 13.54 8.32 -92.71 -0.77 12.76 16 Total: -1.00 -64.00 398.07 2.50 -61.49 By element: Atomic # 1 Polarization: 27.04 SS G_CDS: 0.22 Total: 27.26 kcal Atomic # 6 Polarization: 25.13 SS G_CDS: 7.56 Total: 32.69 kcal Atomic # 7 Polarization: -113.65 SS G_CDS: -6.95 Total: -120.60 kcal Atomic # 8 Polarization: -45.48 SS G_CDS: -0.36 Total: -45.84 kcal Atomic # 14 Polarization: 42.97 SS G_CDS: 2.03 Total: 45.00 kcal Total: -64.00 2.50 -61.49 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000880460309.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.396 kcal (2) G-P(sol) polarization free energy of solvation -63.995 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -106.391 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.501 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.494 kcal (6) G-S(sol) free energy of system = (1) + (5) -103.891 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds