Wall clock time and date at job start Wed Apr 1 2020 01:30:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.42895 * 113.99614 * 2 1 4 4 H 1.09003 * 109.54983 * 30.18050 * 3 2 1 5 5 C 1.53178 * 109.54773 * 269.99446 * 3 2 1 6 6 C 1.53087 * 109.21951 * 183.12695 * 5 3 2 7 7 O 1.43029 * 109.34683 * 57.57718 * 6 5 3 8 8 C 1.42909 * 114.13548 * 298.88709 * 7 6 5 9 9 C 1.53094 * 109.41526 * 61.15391 * 8 7 6 10 10 H 1.09000 * 109.51844 * 62.29981 * 9 8 7 11 11 N 1.46501 * 109.57322 * 182.45750 * 9 8 7 12 12 C 1.34770 * 119.99962 * 274.71800 * 11 9 8 13 13 O 1.21584 * 120.00380 * 355.16885 * 12 11 9 14 14 N 1.34780 * 120.00021 * 175.16835 * 12 11 9 15 15 C 1.46969 * 120.59280 * 184.68330 * 14 12 11 16 16 C 1.53808 * 108.39918 * 124.75973 * 15 14 12 17 17 H 1.08995 * 109.53568 * 169.29972 * 16 15 14 18 18 C 1.53004 * 109.74210 * 289.84632 * 16 15 14 19 19 N 1.46962 * 108.58083 * 49.63263 * 16 15 14 20 20 C 1.36939 * 120.59680 * 124.62442 * 19 16 15 21 21 H 1.07994 * 120.00368 * 218.64618 * 20 19 16 22 22 C 1.38816 * 119.99719 * 38.64570 * 20 19 16 23 23 N 1.31619 * 120.00008 * 0.47990 * 22 20 19 24 24 Si 1.86802 * 120.00104 * 180.48430 * 22 20 19 25 25 H 1.48503 * 109.46989 * 89.99785 * 24 22 20 26 26 H 1.48503 * 109.46734 * 209.99781 * 24 22 20 27 27 H 1.48500 * 109.46801 * 329.99717 * 24 22 20 28 28 C 1.46968 * 118.81331 * 304.65071 * 19 16 15 29 29 H 1.08996 * 109.60686 * 295.47668 * 28 19 16 30 30 C 1.52999 * 109.61209 * 174.97093 * 28 19 16 31 31 C 1.46962 * 120.59268 * 4.95970 * 14 12 11 32 32 H 1.08997 * 109.47848 * 299.99934 * 1 2 3 33 33 H 1.09007 * 109.47349 * 60.00288 * 1 2 3 34 34 H 1.08999 * 109.47398 * 179.97438 * 1 2 3 35 35 H 1.09003 * 109.52032 * 303.06369 * 5 3 2 36 36 H 1.09001 * 109.51543 * 63.18262 * 5 3 2 37 37 H 1.08998 * 109.48209 * 177.63053 * 6 5 3 38 38 H 1.09003 * 109.47681 * 297.65851 * 6 5 3 39 39 H 1.09000 * 109.47578 * 301.17309 * 8 7 6 40 40 H 1.08998 * 109.48390 * 181.14197 * 8 7 6 41 41 H 0.96998 * 119.99702 * 94.71862 * 11 9 8 42 42 H 1.09008 * 109.60622 * 244.53845 * 15 14 12 43 43 H 1.08996 * 109.61089 * 5.04576 * 15 14 12 44 44 H 1.08996 * 109.47048 * 179.15868 * 18 16 15 45 45 H 1.08996 * 109.46873 * 299.15952 * 18 16 15 46 46 H 1.08997 * 109.47012 * 59.15554 * 18 16 15 47 47 H 0.97000 * 120.00460 * 180.02562 * 23 22 20 48 48 H 1.09006 * 109.46951 * 300.85800 * 30 28 19 49 49 H 1.09006 * 109.47391 * 60.85169 * 30 28 19 50 50 H 1.08992 * 109.47430 * 180.85142 * 30 28 19 51 51 H 1.08995 * 109.60903 * 354.95010 * 31 14 12 52 52 H 1.08996 * 109.60925 * 115.29075 * 31 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0101 1.3055 0.0000 4 1 1.3472 1.9998 0.5164 5 6 2.2186 1.7736 -1.4435 6 6 2.9124 3.1382 -1.4354 7 8 4.1525 3.0352 -0.7302 8 6 4.0159 2.6469 0.6383 9 6 3.3657 1.2628 0.7121 10 1 4.0102 0.5312 0.2249 11 7 3.1704 0.8864 2.1144 12 6 4.1723 0.3027 2.8012 13 8 5.2071 0.0084 2.2347 14 7 4.0273 0.0451 4.1162 15 6 5.1464 -0.4963 4.9002 16 6 5.3960 0.4361 6.0978 17 1 6.0880 -0.0401 6.7924 18 6 5.9850 1.7604 5.6077 19 7 4.1143 0.6859 6.7720 20 6 3.9666 0.4233 8.1078 21 1 3.0426 0.0031 8.4766 22 6 5.0045 0.6973 8.9879 23 7 6.1271 1.2182 8.5397 24 14 4.8082 0.3265 10.8082 25 1 5.2704 -1.0575 11.0841 26 1 5.6195 1.2864 11.5991 27 1 3.3785 0.4560 11.1882 28 6 2.9936 1.2220 5.9867 29 1 3.2422 2.2214 5.6297 30 6 1.7379 1.2821 6.8588 31 6 2.7456 0.2949 4.7904 32 1 -0.3635 0.5138 0.8899 33 1 -0.3634 0.5138 -0.8900 34 1 -0.3634 -1.0276 -0.0005 35 1 2.8400 1.0522 -1.9742 36 1 1.2530 1.8587 -1.9418 37 1 3.1009 3.4563 -2.4608 38 1 2.2724 3.8684 -0.9400 39 1 3.3904 3.3707 1.1608 40 1 4.9997 2.6117 1.1062 41 1 2.3200 1.0574 2.5485 42 1 4.8937 -1.4948 5.2571 43 1 6.0402 -0.5427 4.2781 44 1 6.1462 2.4231 6.4579 45 1 6.9354 1.5726 5.1081 46 1 5.2931 2.2290 4.9079 47 1 6.8526 1.4093 9.1546 48 1 1.4979 0.2819 7.2196 49 1 1.9166 1.9415 7.7082 50 1 0.9047 1.6658 6.2701 51 1 2.0536 0.7711 4.0958 52 1 2.3245 -0.6488 5.1369 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000898077013.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:30:51 Heat of formation + Delta-G solvation = -79.733846 kcal Electronic energy + Delta-G solvation = -32699.954816 eV Core-core repulsion = 28508.109127 eV Total energy + Delta-G solvation = -4191.845689 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 341.215 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -40.52091 -39.41437 -37.63206 -37.36580 -34.65281 -33.95280 -32.61997 -32.25262 -31.32127 -29.63079 -27.87684 -27.14931 -26.26152 -25.37029 -24.44732 -23.76811 -23.25389 -21.03986 -20.74792 -20.05798 -18.67289 -18.02607 -17.10711 -16.68885 -16.44995 -16.08135 -15.72191 -15.39267 -15.14280 -14.96651 -14.74035 -14.49763 -14.08898 -13.94225 -13.72716 -13.43711 -13.31799 -13.18583 -12.94083 -12.79591 -12.22720 -12.14236 -11.93597 -11.68923 -11.54516 -11.48597 -11.24775 -11.18760 -10.93547 -10.83168 -10.69172 -10.62313 -10.57793 -10.14626 -10.13253 -10.01331 -9.93089 -9.77801 -9.72645 -9.39054 -8.87672 -8.44961 -8.00807 -6.47612 -5.81508 -3.38814 2.90444 3.32502 3.34119 3.41509 3.42053 3.61368 3.71461 4.17927 4.34408 4.43770 4.50657 4.61725 4.72270 4.93695 4.99032 5.03397 5.11299 5.16448 5.19198 5.35045 5.36887 5.40654 5.45262 5.62947 5.66640 5.67520 5.79295 5.83438 5.90323 6.07078 6.17101 6.27293 6.31932 6.42321 6.49718 6.59484 6.69165 6.83135 6.86072 6.91330 6.96606 6.98816 7.07375 7.11554 7.36553 7.68118 7.73263 7.84980 8.35477 8.49869 9.00667 9.21263 9.77645 10.40369 11.24240 Molecular weight = 341.21amu Principal moments of inertia in cm(-1) A = 0.019660 B = 0.003016 C = 0.002836 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1423.889080 B = 9282.437567 C = 9870.524464 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.372 6.372 3 C 0.081 3.919 4 H 0.066 0.934 5 C -0.174 4.174 6 C 0.060 3.940 7 O -0.374 6.374 8 C 0.055 3.945 9 C 0.138 3.862 10 H 0.105 0.895 11 N -0.739 5.739 12 C 0.707 3.293 13 O -0.598 6.598 14 N -0.610 5.610 15 C 0.109 3.891 16 C 0.181 3.819 17 H 0.106 0.894 18 C -0.135 4.135 19 N -0.580 5.580 20 C -0.257 4.257 21 H 0.065 0.935 22 C 0.015 3.985 23 N -0.895 5.895 24 Si 0.900 3.100 25 H -0.287 1.287 26 H -0.291 1.291 27 H -0.279 1.279 28 C 0.156 3.844 29 H 0.030 0.970 30 C -0.133 4.133 31 C 0.102 3.898 32 H 0.042 0.958 33 H 0.040 0.960 34 H 0.087 0.913 35 H 0.085 0.915 36 H 0.078 0.922 37 H 0.099 0.901 38 H 0.052 0.948 39 H 0.053 0.947 40 H 0.108 0.892 41 H 0.394 0.606 42 H 0.055 0.945 43 H 0.080 0.920 44 H 0.074 0.926 45 H 0.027 0.973 46 H 0.019 0.981 47 H 0.255 0.745 48 H 0.055 0.945 49 H 0.065 0.935 50 H 0.037 0.963 51 H 0.057 0.943 52 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.079 2.622 -16.749 20.816 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.291 6.291 3 C 0.022 3.978 4 H 0.084 0.916 5 C -0.213 4.213 6 C -0.018 4.018 7 O -0.292 6.292 8 C -0.024 4.024 9 C 0.031 3.969 10 H 0.123 0.877 11 N -0.399 5.399 12 C 0.409 3.591 13 O -0.477 6.477 14 N -0.346 5.346 15 C -0.015 4.015 16 C 0.074 3.926 17 H 0.123 0.877 18 C -0.194 4.194 19 N -0.303 5.303 20 C -0.387 4.387 21 H 0.083 0.917 22 C -0.185 4.185 23 N -0.538 5.538 24 Si 0.730 3.270 25 H -0.214 1.214 26 H -0.217 1.217 27 H -0.205 1.205 28 C 0.048 3.952 29 H 0.047 0.953 30 C -0.191 4.191 31 C -0.024 4.024 32 H 0.061 0.939 33 H 0.058 0.942 34 H 0.105 0.895 35 H 0.104 0.896 36 H 0.097 0.903 37 H 0.117 0.883 38 H 0.070 0.930 39 H 0.072 0.928 40 H 0.126 0.874 41 H 0.230 0.770 42 H 0.073 0.927 43 H 0.098 0.902 44 H 0.093 0.907 45 H 0.046 0.954 46 H 0.038 0.962 47 H 0.065 0.935 48 H 0.074 0.926 49 H 0.084 0.916 50 H 0.056 0.944 51 H 0.075 0.925 52 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -10.857 2.330 -17.115 20.401 hybrid contribution -1.114 0.093 1.300 1.715 sum -11.971 2.424 -15.814 19.982 Atomic orbital electron populations 1.22817 0.81122 1.02976 0.99819 1.88033 1.19487 1.26633 1.94912 1.22458 0.94403 0.85494 0.95415 0.91642 1.22736 1.02337 0.99022 0.97188 1.22615 0.86139 0.95076 0.97922 1.88032 1.29219 1.88742 1.23167 1.23085 1.03037 0.93547 0.82704 1.21437 0.95578 0.98049 0.81838 0.87742 1.45043 1.16329 1.66841 1.11639 1.15818 0.83351 0.78371 0.81580 1.90870 1.28701 1.59599 1.68496 1.47179 1.14144 1.67081 1.06173 1.22520 0.88002 0.97270 0.93714 1.20852 0.88678 0.92846 0.90258 0.87668 1.21946 0.97242 1.00217 0.99990 1.44008 1.07139 1.73508 1.05660 1.19038 1.01332 1.35930 0.82367 0.91739 1.25377 0.97419 0.97914 0.97796 1.69900 1.04590 1.45741 1.33587 0.86344 0.77551 0.77519 0.85579 1.21442 1.21699 1.20477 1.20779 0.89963 0.93848 0.90613 0.95252 1.21743 0.95350 1.02156 0.99892 1.22281 0.84280 1.00406 0.95429 0.93932 0.94171 0.89471 0.89603 0.90344 0.88260 0.92984 0.92828 0.87381 0.76996 0.92696 0.90155 0.90704 0.95399 0.96194 0.93515 0.92602 0.91582 0.94416 0.92472 0.91811 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.22 10.82 101.05 1.09 1.31 16 2 O -0.37 -4.14 10.28 -35.23 -0.36 -4.50 16 3 C 0.08 0.80 2.20 -26.54 -0.06 0.74 16 4 H 0.07 0.54 7.79 -51.93 -0.40 0.14 16 5 C -0.17 -1.43 5.75 -26.59 -0.15 -1.59 16 6 C 0.06 0.49 6.85 37.20 0.26 0.74 16 7 O -0.37 -4.49 10.77 -35.23 -0.38 -4.87 16 8 C 0.05 0.68 6.43 37.21 0.24 0.92 16 9 C 0.14 1.78 2.37 -67.79 -0.16 1.62 16 10 H 0.10 1.65 7.51 -51.93 -0.39 1.26 16 11 N -0.74 -10.53 4.92 -58.54 -0.29 -10.82 16 12 C 0.71 13.02 8.27 -86.92 -0.72 12.30 16 13 O -0.60 -13.00 15.40 5.29 0.08 -12.92 16 14 N -0.61 -11.31 2.58 -177.95 -0.46 -11.77 16 15 C 0.11 2.24 5.99 -3.37 -0.02 2.22 16 16 C 0.18 4.13 2.32 -67.26 -0.16 3.97 16 17 H 0.11 2.72 6.26 -51.93 -0.33 2.40 16 18 C -0.14 -3.06 8.93 37.16 0.33 -2.73 16 19 N -0.58 -13.36 2.66 -156.77 -0.42 -13.78 16 20 C -0.26 -6.46 8.32 -15.06 -0.13 -6.58 16 21 H 0.07 1.60 6.48 -52.49 -0.34 1.26 16 22 C 0.01 0.38 5.22 -17.43 -0.09 0.29 16 23 N -0.90 -24.23 9.76 55.49 0.54 -23.69 16 24 Si 0.90 20.69 29.55 -169.99 -5.02 15.66 16 25 H -0.29 -6.66 7.11 56.52 0.40 -6.26 16 26 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 27 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16 28 C 0.16 2.98 3.23 -67.49 -0.22 2.76 16 29 H 0.03 0.61 7.40 -51.93 -0.38 0.22 16 30 C -0.13 -2.26 8.05 37.16 0.30 -1.96 16 31 C 0.10 1.67 5.90 -3.60 -0.02 1.65 16 32 H 0.04 0.28 8.09 -51.93 -0.42 -0.14 16 33 H 0.04 0.24 7.96 -51.93 -0.41 -0.17 16 34 H 0.09 0.59 8.14 -51.93 -0.42 0.17 16 35 H 0.09 0.80 8.14 -51.93 -0.42 0.38 16 36 H 0.08 0.49 7.96 -51.93 -0.41 0.08 16 37 H 0.10 0.64 8.14 -51.93 -0.42 0.22 16 38 H 0.05 0.36 8.14 -51.93 -0.42 -0.06 16 39 H 0.05 0.59 8.14 -51.93 -0.42 0.16 16 40 H 0.11 1.58 8.14 -51.93 -0.42 1.16 16 41 H 0.39 4.82 6.06 -40.82 -0.25 4.58 16 42 H 0.05 1.12 8.14 -51.92 -0.42 0.70 16 43 H 0.08 1.70 7.00 -51.93 -0.36 1.33 16 44 H 0.07 1.89 6.98 -51.93 -0.36 1.52 16 45 H 0.03 0.60 8.14 -51.93 -0.42 0.17 16 46 H 0.02 0.43 7.02 -51.93 -0.36 0.06 16 47 H 0.25 6.78 8.31 -40.82 -0.34 6.45 16 48 H 0.05 0.96 7.30 -51.93 -0.38 0.58 16 49 H 0.07 1.24 7.75 -51.93 -0.40 0.84 16 50 H 0.04 0.51 8.14 -51.93 -0.42 0.08 16 51 H 0.06 0.75 5.55 -51.93 -0.29 0.47 16 52 H 0.06 1.06 8.12 -51.93 -0.42 0.64 16 LS Contribution 394.70 15.07 5.95 5.95 Total: -1.00 -30.47 394.70 -8.72 -39.19 By element: Atomic # 1 Polarization: 14.75 SS G_CDS: -8.86 Total: 5.89 kcal Atomic # 6 Polarization: 15.16 SS G_CDS: 0.50 Total: 15.66 kcal Atomic # 7 Polarization: -59.43 SS G_CDS: -0.62 Total: -60.06 kcal Atomic # 8 Polarization: -21.63 SS G_CDS: -0.66 Total: -22.29 kcal Atomic # 14 Polarization: 20.69 SS G_CDS: -5.02 Total: 15.66 kcal Total LS contribution 5.95 Total: 5.95 kcal Total: -30.47 -8.72 -39.19 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000898077013.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.545 kcal (2) G-P(sol) polarization free energy of solvation -30.467 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.012 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.722 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.189 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.734 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds