Wall clock time and date at job start Wed Apr 1 2020 01:30:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.42895 * 113.99614 * 2 1 4 4 H 1.09003 * 109.54983 * 30.18050 * 3 2 1 5 5 C 1.53178 * 109.54773 * 269.99446 * 3 2 1 6 6 C 1.53087 * 109.21951 * 183.12695 * 5 3 2 7 7 O 1.43029 * 109.34683 * 57.57718 * 6 5 3 8 8 C 1.42909 * 114.13548 * 298.88709 * 7 6 5 9 9 C 1.53094 * 109.41526 * 61.15391 * 8 7 6 10 10 H 1.09000 * 109.51844 * 62.29981 * 9 8 7 11 11 N 1.46501 * 109.57322 * 182.45750 * 9 8 7 12 12 C 1.34770 * 119.99962 * 274.71800 * 11 9 8 13 13 O 1.21584 * 120.00380 * 355.16885 * 12 11 9 14 14 N 1.34780 * 120.00021 * 175.16835 * 12 11 9 15 15 C 1.46969 * 120.59280 * 184.68330 * 14 12 11 16 16 C 1.53808 * 108.39918 * 124.75973 * 15 14 12 17 17 H 1.08995 * 109.53568 * 169.29972 * 16 15 14 18 18 C 1.53004 * 109.74210 * 289.84632 * 16 15 14 19 19 N 1.46962 * 108.58083 * 49.63263 * 16 15 14 20 20 C 1.36939 * 120.59680 * 124.62442 * 19 16 15 21 21 H 1.07994 * 120.00368 * 218.64618 * 20 19 16 22 22 C 1.38816 * 119.99719 * 38.64570 * 20 19 16 23 23 N 1.31619 * 120.00008 * 0.47990 * 22 20 19 24 24 Si 1.86802 * 120.00104 * 180.48430 * 22 20 19 25 25 H 1.48503 * 109.46989 * 89.99785 * 24 22 20 26 26 H 1.48503 * 109.46734 * 209.99781 * 24 22 20 27 27 H 1.48500 * 109.46801 * 329.99717 * 24 22 20 28 28 C 1.46968 * 118.81331 * 304.65071 * 19 16 15 29 29 H 1.08996 * 109.60686 * 295.47668 * 28 19 16 30 30 C 1.52999 * 109.61209 * 174.97093 * 28 19 16 31 31 C 1.46962 * 120.59268 * 4.95970 * 14 12 11 32 32 H 1.08997 * 109.47848 * 299.99934 * 1 2 3 33 33 H 1.09007 * 109.47349 * 60.00288 * 1 2 3 34 34 H 1.08999 * 109.47398 * 179.97438 * 1 2 3 35 35 H 1.09003 * 109.52032 * 303.06369 * 5 3 2 36 36 H 1.09001 * 109.51543 * 63.18262 * 5 3 2 37 37 H 1.08998 * 109.48209 * 177.63053 * 6 5 3 38 38 H 1.09003 * 109.47681 * 297.65851 * 6 5 3 39 39 H 1.09000 * 109.47578 * 301.17309 * 8 7 6 40 40 H 1.08998 * 109.48390 * 181.14197 * 8 7 6 41 41 H 0.96998 * 119.99702 * 94.71862 * 11 9 8 42 42 H 1.09008 * 109.60622 * 244.53845 * 15 14 12 43 43 H 1.08996 * 109.61089 * 5.04576 * 15 14 12 44 44 H 1.08996 * 109.47048 * 179.15868 * 18 16 15 45 45 H 1.08996 * 109.46873 * 299.15952 * 18 16 15 46 46 H 1.08997 * 109.47012 * 59.15554 * 18 16 15 47 47 H 0.97000 * 120.00460 * 180.02562 * 23 22 20 48 48 H 1.09006 * 109.46951 * 300.85800 * 30 28 19 49 49 H 1.09006 * 109.47391 * 60.85169 * 30 28 19 50 50 H 1.08992 * 109.47430 * 180.85142 * 30 28 19 51 51 H 1.08995 * 109.60903 * 354.95010 * 31 14 12 52 52 H 1.08996 * 109.60925 * 115.29075 * 31 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0101 1.3055 0.0000 4 1 1.3472 1.9998 0.5164 5 6 2.2186 1.7736 -1.4435 6 6 2.9124 3.1382 -1.4354 7 8 4.1525 3.0352 -0.7302 8 6 4.0159 2.6469 0.6383 9 6 3.3657 1.2628 0.7121 10 1 4.0102 0.5312 0.2249 11 7 3.1704 0.8864 2.1144 12 6 4.1723 0.3027 2.8012 13 8 5.2071 0.0084 2.2347 14 7 4.0273 0.0451 4.1162 15 6 5.1464 -0.4963 4.9002 16 6 5.3960 0.4361 6.0978 17 1 6.0880 -0.0401 6.7924 18 6 5.9850 1.7604 5.6077 19 7 4.1143 0.6859 6.7720 20 6 3.9666 0.4233 8.1078 21 1 3.0426 0.0031 8.4766 22 6 5.0045 0.6973 8.9879 23 7 6.1271 1.2182 8.5397 24 14 4.8082 0.3265 10.8082 25 1 5.2704 -1.0575 11.0841 26 1 5.6195 1.2864 11.5991 27 1 3.3785 0.4560 11.1882 28 6 2.9936 1.2220 5.9867 29 1 3.2422 2.2214 5.6297 30 6 1.7379 1.2821 6.8588 31 6 2.7456 0.2949 4.7904 32 1 -0.3635 0.5138 0.8899 33 1 -0.3634 0.5138 -0.8900 34 1 -0.3634 -1.0276 -0.0005 35 1 2.8400 1.0522 -1.9742 36 1 1.2530 1.8587 -1.9418 37 1 3.1009 3.4563 -2.4608 38 1 2.2724 3.8684 -0.9400 39 1 3.3904 3.3707 1.1608 40 1 4.9997 2.6117 1.1062 41 1 2.3200 1.0574 2.5485 42 1 4.8937 -1.4948 5.2571 43 1 6.0402 -0.5427 4.2781 44 1 6.1462 2.4231 6.4579 45 1 6.9354 1.5726 5.1081 46 1 5.2931 2.2290 4.9079 47 1 6.8526 1.4093 9.1546 48 1 1.4979 0.2819 7.2196 49 1 1.9166 1.9415 7.7082 50 1 0.9047 1.6658 6.2701 51 1 2.0536 0.7711 4.0958 52 1 2.3245 -0.6488 5.1369 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000898077013.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:30:50 Heat of formation + Delta-G solvation = -100.417209 kcal Electronic energy + Delta-G solvation = -32700.851714 eV Core-core repulsion = 28508.109127 eV Total energy + Delta-G solvation = -4192.742587 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 341.215 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -41.71635 -40.56123 -38.94171 -38.39494 -35.91559 -35.60507 -34.20038 -33.27443 -32.87040 -30.74490 -29.66523 -27.78882 -27.71718 -26.96272 -25.48077 -25.18937 -24.32266 -22.52336 -21.78567 -21.50255 -20.30957 -19.37357 -18.00115 -17.84544 -17.67767 -17.27491 -16.95398 -16.72545 -16.38421 -16.15459 -15.83832 -15.71761 -15.51314 -15.28082 -15.18311 -14.83804 -14.61743 -14.35266 -14.11993 -13.91153 -13.58551 -13.44371 -13.11536 -12.92580 -12.87239 -12.83444 -12.75936 -12.48118 -12.31431 -12.26081 -12.25127 -11.97070 -11.91024 -11.74245 -11.56758 -11.55551 -11.43532 -11.08702 -10.98697 -10.57258 -10.40764 -10.12942 -9.52563 -8.33710 -7.76507 -5.35805 1.50206 1.52494 1.58735 1.60776 2.16002 2.54734 2.60774 2.78260 3.04349 3.39485 3.53474 3.57697 3.76516 3.88807 3.93079 4.12439 4.18235 4.23377 4.29827 4.33275 4.43251 4.48231 4.52473 4.58369 4.64268 4.66973 4.69538 4.72180 4.75464 4.82331 4.85694 4.90650 4.91882 4.96310 5.00297 5.13094 5.14914 5.21624 5.37584 5.42866 5.44240 5.61666 5.77166 5.79244 5.85424 6.05921 6.15916 6.21953 6.55685 6.99837 7.27213 7.57482 7.91596 8.49657 9.26448 Molecular weight = 341.21amu Principal moments of inertia in cm(-1) A = 0.019660 B = 0.003016 C = 0.002836 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1423.889080 B = 9282.437567 C = 9870.524464 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.023 3.977 2 O -0.401 6.401 3 C 0.086 3.914 4 H 0.093 0.907 5 C -0.168 4.168 6 C 0.053 3.947 7 O -0.397 6.397 8 C 0.062 3.938 9 C 0.137 3.863 10 H 0.067 0.933 11 N -0.721 5.721 12 C 0.704 3.296 13 O -0.636 6.636 14 N -0.614 5.614 15 C 0.122 3.878 16 C 0.184 3.816 17 H 0.071 0.929 18 C -0.116 4.116 19 N -0.595 5.595 20 C -0.253 4.253 21 H 0.071 0.929 22 C -0.038 4.038 23 N -0.922 5.922 24 Si 0.958 3.042 25 H -0.291 1.291 26 H -0.301 1.301 27 H -0.268 1.268 28 C 0.150 3.850 29 H 0.019 0.981 30 C -0.125 4.125 31 C 0.109 3.891 32 H 0.055 0.945 33 H 0.058 0.942 34 H 0.089 0.911 35 H 0.067 0.933 36 H 0.107 0.893 37 H 0.118 0.882 38 H 0.074 0.926 39 H 0.075 0.925 40 H 0.075 0.925 41 H 0.407 0.593 42 H 0.055 0.945 43 H 0.069 0.931 44 H 0.046 0.954 45 H 0.028 0.972 46 H 0.023 0.977 47 H 0.246 0.754 48 H 0.052 0.948 49 H 0.042 0.958 50 H 0.081 0.919 51 H 0.099 0.901 52 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.829 3.290 -18.090 24.262 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 O -0.321 6.321 3 C 0.028 3.972 4 H 0.111 0.889 5 C -0.206 4.206 6 C -0.023 4.023 7 O -0.314 6.314 8 C -0.016 4.016 9 C 0.031 3.969 10 H 0.086 0.914 11 N -0.380 5.380 12 C 0.406 3.594 13 O -0.518 6.518 14 N -0.349 5.349 15 C -0.003 4.003 16 C 0.077 3.923 17 H 0.089 0.911 18 C -0.175 4.175 19 N -0.318 5.318 20 C -0.384 4.384 21 H 0.088 0.912 22 C -0.234 4.234 23 N -0.567 5.567 24 Si 0.787 3.213 25 H -0.218 1.218 26 H -0.228 1.228 27 H -0.193 1.193 28 C 0.044 3.956 29 H 0.036 0.964 30 C -0.182 4.182 31 C -0.016 4.016 32 H 0.074 0.926 33 H 0.076 0.924 34 H 0.108 0.892 35 H 0.086 0.914 36 H 0.126 0.874 37 H 0.136 0.864 38 H 0.092 0.908 39 H 0.093 0.907 40 H 0.093 0.907 41 H 0.246 0.754 42 H 0.073 0.927 43 H 0.087 0.913 44 H 0.065 0.935 45 H 0.047 0.953 46 H 0.042 0.958 47 H 0.056 0.944 48 H 0.072 0.928 49 H 0.061 0.939 50 H 0.100 0.900 51 H 0.116 0.884 52 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -14.691 3.011 -18.480 23.799 hybrid contribution 0.003 -0.113 1.613 1.617 sum -14.688 2.899 -16.867 22.553 Atomic orbital electron populations 1.23016 0.79219 1.03748 1.01343 1.88003 1.21627 1.27290 1.95138 1.22444 0.92714 0.85873 0.96178 0.88931 1.22701 1.03467 0.98381 0.96090 1.22913 0.85050 0.95629 0.98718 1.88006 1.31821 1.88734 1.22888 1.22860 1.01586 0.93757 0.83437 1.21504 0.97415 0.97210 0.80779 0.91446 1.44869 1.15701 1.65406 1.12019 1.15973 0.83611 0.78351 0.81458 1.90847 1.30589 1.61109 1.69278 1.47137 1.14309 1.67117 1.06304 1.22135 0.88694 0.96674 0.92788 1.20619 0.88499 0.92821 0.90365 0.91141 1.21724 0.97394 0.99723 0.98668 1.44205 1.08056 1.74008 1.05559 1.19309 1.01047 1.34645 0.83361 0.91153 1.26010 0.97539 0.98765 1.01089 1.70072 1.05077 1.47474 1.34081 0.85429 0.77639 0.76579 0.81642 1.21778 1.22800 1.19283 1.20991 0.89502 0.93659 0.91498 0.96354 1.21660 0.95548 1.01728 0.99313 1.22301 0.83838 1.00374 0.95043 0.92630 0.92351 0.89239 0.91426 0.87429 0.86443 0.90757 0.90686 0.90677 0.75426 0.92660 0.91265 0.93519 0.95312 0.95751 0.94434 0.92846 0.93878 0.90023 0.88352 0.91251 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.26 10.82 113.37 1.23 1.48 16 2 O -0.40 -7.84 10.28 -148.98 -1.53 -9.38 16 3 C 0.09 1.45 2.20 30.72 0.07 1.52 16 4 H 0.09 1.07 7.79 -2.39 -0.02 1.05 16 5 C -0.17 -2.27 5.75 30.68 0.18 -2.09 16 6 C 0.05 0.71 6.85 72.01 0.49 1.20 16 7 O -0.40 -9.07 10.77 -148.98 -1.60 -10.67 16 8 C 0.06 1.49 6.43 72.01 0.46 1.95 16 9 C 0.14 3.40 2.37 45.08 0.11 3.51 16 10 H 0.07 2.20 7.51 -2.39 -0.02 2.18 16 11 N -0.72 -19.24 4.92 -457.37 -2.25 -21.49 16 12 C 0.70 25.57 8.27 179.06 1.48 27.05 16 13 O -0.64 -28.35 15.40 -3.98 -0.06 -28.42 16 14 N -0.61 -22.18 2.58 -835.17 -2.16 -24.34 16 15 C 0.12 5.09 5.99 86.56 0.52 5.61 16 16 C 0.18 8.66 2.32 45.18 0.10 8.76 16 17 H 0.07 3.82 6.26 -2.39 -0.01 3.81 16 18 C -0.12 -5.43 8.93 71.98 0.64 -4.79 16 19 N -0.59 -27.40 2.66 -649.90 -1.73 -29.12 16 20 C -0.25 -12.73 8.32 84.03 0.70 -12.03 16 21 H 0.07 3.41 6.48 -2.91 -0.02 3.39 16 22 C -0.04 -1.98 5.22 84.86 0.44 -1.53 16 23 N -0.92 -51.67 9.76 21.65 0.21 -51.46 16 24 Si 0.96 43.12 29.55 68.60 2.03 45.15 16 25 H -0.29 -13.11 7.11 99.48 0.71 -12.40 16 26 H -0.30 -13.95 7.11 99.48 0.71 -13.25 16 27 H -0.27 -11.44 7.11 99.48 0.71 -10.73 16 28 C 0.15 5.47 3.23 45.03 0.15 5.62 16 29 H 0.02 0.73 7.40 -2.39 -0.02 0.71 16 30 C -0.12 -3.87 8.05 71.98 0.58 -3.29 16 31 C 0.11 3.27 5.90 86.41 0.51 3.78 16 32 H 0.06 0.49 8.09 -2.39 -0.02 0.47 16 33 H 0.06 0.45 7.96 -2.38 -0.02 0.43 16 34 H 0.09 0.96 8.14 -2.39 -0.02 0.94 16 35 H 0.07 1.17 8.14 -2.39 -0.02 1.15 16 36 H 0.11 0.86 7.96 -2.39 -0.02 0.84 16 37 H 0.12 1.15 8.14 -2.39 -0.02 1.13 16 38 H 0.07 0.70 8.14 -2.39 -0.02 0.68 16 39 H 0.08 1.45 8.14 -2.39 -0.02 1.43 16 40 H 0.07 2.27 8.14 -2.39 -0.02 2.25 16 41 H 0.41 8.49 6.06 -92.71 -0.56 7.93 16 42 H 0.06 2.28 8.14 -2.38 -0.02 2.26 16 43 H 0.07 3.03 7.00 -2.39 -0.02 3.01 16 44 H 0.05 2.43 6.98 -2.39 -0.02 2.42 16 45 H 0.03 1.28 8.14 -2.39 -0.02 1.26 16 46 H 0.02 1.07 7.02 -2.39 -0.02 1.05 16 47 H 0.25 13.67 8.31 -92.71 -0.77 12.90 16 48 H 0.05 1.68 7.30 -2.38 -0.02 1.66 16 49 H 0.04 1.53 7.75 -2.38 -0.02 1.51 16 50 H 0.08 1.82 8.14 -2.39 -0.02 1.80 16 51 H 0.10 2.14 5.55 -2.39 -0.01 2.13 16 52 H 0.07 2.08 8.12 -2.39 -0.02 2.06 16 Total: -1.00 -69.79 394.70 0.91 -68.87 By element: Atomic # 1 Polarization: 23.75 SS G_CDS: 0.35 Total: 24.10 kcal Atomic # 6 Polarization: 29.10 SS G_CDS: 7.66 Total: 36.76 kcal Atomic # 7 Polarization: -120.49 SS G_CDS: -5.93 Total: -126.42 kcal Atomic # 8 Polarization: -45.26 SS G_CDS: -3.20 Total: -48.46 kcal Atomic # 14 Polarization: 43.12 SS G_CDS: 2.03 Total: 45.15 kcal Total: -69.79 0.91 -68.87 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000898077013.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.544 kcal (2) G-P(sol) polarization free energy of solvation -69.785 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -101.329 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.912 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.873 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.417 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds